BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147011.8 - phase: 0
(226 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215303 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl pept... 395 e-110
TC215301 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl pept... 394 e-110
TC215300 similar to GB|AAO64793.1|29028828|BT005858 At1g56700 {A... 382 e-107
TC215302 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl pept... 314 2e-86
TC234760 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl pept... 107 7e-49
CA937085 similar to GP|27261098|dbj OJ1340_C08.26 {Oryza sativa ... 57 9e-09
TC226215 homologue to UP|Q6S4R9 (Q6S4R9) Allantoinase , partial... 29 1.5
TC226216 homologue to UP|Q6S4R9 (Q6S4R9) Allantoinase , partial... 29 1.5
TC218089 29 2.0
BI788249 homologue to GP|20513375|dbj glyceraldehyde-3-phosphate... 28 4.4
BQ133974 28 4.4
TC218613 similar to UP|ICE1_ARATH (Q9LSE2) Transcription factor ... 28 4.4
TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ... 28 4.4
TC230904 similar to UP|Q6NMK6 (Q6NMK6) At4g25280, partial (35%) 27 7.5
TC227504 27 7.5
BE555340 similar to GP|20340237|gb protein phosphatase 2c-like p... 27 9.8
>TC215303 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl peptidase-like
protein, partial (95%)
Length = 1463
Score = 395 bits (1014), Expect = e-110
Identities = 197/219 (89%), Positives = 209/219 (94%)
Frame = +1
Query: 1 MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTA 60
MGSEGP AAVT V++TGFKKFHGVSENPTETIVNNLTEY+KKKGL KGL IGSCSIL+TA
Sbjct: 250 MGSEGPPAAVT-VHVTGFKKFHGVSENPTETIVNNLTEYLKKKGLSKGLVIGSCSILETA 426
Query: 61 GQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 120
GQGAL+PLY+TLQSAI +KESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE
Sbjct: 427 GQGALIPLYKTLQSAITSKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 606
Query: 121 MGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYHSL 180
MGWKPQKVPIVPSD I+RIR+TTLPVEEITK+LA KGYDVMTSDDAGRFVCNYVYYHSL
Sbjct: 607 MGWKPQKVPIVPSDVAITRIRKTTLPVEEITKSLANKGYDVMTSDDAGRFVCNYVYYHSL 786
Query: 181 RFAEQNGNKSLFVHVPLFFTINEETQMQFAASLLEVLAN 219
RFAEQNG KSLF+HVPLF TINEETQMQFAASLLEVLA+
Sbjct: 787 RFAEQNGTKSLFLHVPLFSTINEETQMQFAASLLEVLAS 903
>TC215301 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl peptidase-like
protein, partial (96%)
Length = 1295
Score = 394 bits (1011), Expect = e-110
Identities = 198/221 (89%), Positives = 208/221 (93%), Gaps = 2/221 (0%)
Frame = +2
Query: 1 MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYV-KKKGLPKGLAIGSCSILDT 59
MGSEGP AAV TV++TGF+KFHGVSENPTETIVNNL EY+ KKKGLPKGL IGSCSIL+T
Sbjct: 287 MGSEGPPAAVATVHVTGFRKFHGVSENPTETIVNNLNEYLNKKKGLPKGLVIGSCSILET 466
Query: 60 AGQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPD 119
AGQGAL+PLYQTL+SAI +KESESSSSNKIIWLHFGVNS ATRFAIERQAVNEATFRCPD
Sbjct: 467 AGQGALIPLYQTLKSAITSKESESSSSNKIIWLHFGVNSAATRFAIERQAVNEATFRCPD 646
Query: 120 EMGWKPQKVPIVPSDGPISRIRETT-LPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYH 178
EMGWKPQKVPIVPSDG I+RIRETT LPVEEITK LA KGYDVMTSDDAGRFVCNYVYYH
Sbjct: 647 EMGWKPQKVPIVPSDGAITRIRETTLLPVEEITKALANKGYDVMTSDDAGRFVCNYVYYH 826
Query: 179 SLRFAEQNGNKSLFVHVPLFFTINEETQMQFAASLLEVLAN 219
SLRFAEQNG KSLFVHVPLF TINEETQMQFAASLLEVLA+
Sbjct: 827 SLRFAEQNGTKSLFVHVPLFSTINEETQMQFAASLLEVLAS 949
>TC215300 similar to GB|AAO64793.1|29028828|BT005858 At1g56700 {Arabidopsis
thaliana;} , partial (90%)
Length = 1153
Score = 382 bits (981), Expect = e-107
Identities = 186/220 (84%), Positives = 201/220 (90%)
Frame = +2
Query: 1 MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTA 60
MGSEGP+ TT+++TGFKKFHGVSENPTETI NNLTEY+ KKGLPKGL IGSCSIL+TA
Sbjct: 191 MGSEGPTTPTTTIHVTGFKKFHGVSENPTETIANNLTEYMNKKGLPKGLVIGSCSILETA 370
Query: 61 GQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 120
GQGALVPLYQ LQSA+IAK++ESS+SN+IIWLHFGVNSGATRFAIE QAVNEA FRCPDE
Sbjct: 371 GQGALVPLYQRLQSAVIAKDTESSNSNRIIWLHFGVNSGATRFAIENQAVNEANFRCPDE 550
Query: 121 MGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYHSL 180
MGWKPQKVPIVPSDG ISR RET+LPV EITK LA KGY+VM S DAGRFVCNYVYYHSL
Sbjct: 551 MGWKPQKVPIVPSDGGISRTRETSLPVVEITKALAEKGYEVMVSVDAGRFVCNYVYYHSL 730
Query: 181 RFAEQNGNKSLFVHVPLFFTINEETQMQFAASLLEVLANV 220
RF EQNG KSLFVHVPLF TINEETQMQFAASLLEVLA++
Sbjct: 731 RFTEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASI 850
>TC215302 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl peptidase-like
protein, partial (58%)
Length = 821
Score = 314 bits (805), Expect = 2e-86
Identities = 159/191 (83%), Positives = 168/191 (87%)
Frame = +2
Query: 30 ETIVNNLTEYVKKKGLPKGLAIGSCSILDTAGQGALVPLYQTLQSAIIAKESESSSSNKI 89
ETI NNLTEY+ K PK L IGS SIL+TA QGALVPLYQ LQSA+ AK+SESS+SNKI
Sbjct: 2 ETIANNLTEYMNKXXXPKRLVIGSSSILETAXQGALVPLYQRLQSAVNAKDSESSNSNKI 181
Query: 90 IWLHFGVNSGATRFAIERQAVNEATFRCPDEMGWKPQKVPIVPSDGPISRIRETTLPVEE 149
LHFGVNSGATRFAIE+QAVNEA FRCPDEMGWKPQKVPIVPSDG ISR RETTLPV E
Sbjct: 182 XXLHFGVNSGATRFAIEKQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETTLPVVE 361
Query: 150 ITKTLATKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGNKSLFVHVPLFFTINEETQMQF 209
ITK L KGY+VM SDDAGRFVCNYVYYHSLRFAEQNG KSLFVHVPLF TINEETQMQF
Sbjct: 362 ITKALTEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQF 541
Query: 210 AASLLEVLANV 220
AASLLEVLA++
Sbjct: 542 AASLLEVLASI 574
>TC234760 similar to UP|Q8GVF6 (Q8GVF6) Pyrrolidone carboxyl peptidase-like
protein, partial (55%)
Length = 705
Score = 107 bits (268), Expect(2) = 7e-49
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +3
Query: 57 LDTAGQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFR 116
LD AG GAL LY T++SAI +++S S+ ++WLH GVNSGA RFAIE QA NEATFR
Sbjct: 9 LDVAGDGALPQLYLTMESAI--SKTDSVSNANVVWLHLGVNSGAVRFAIEHQAANEATFR 182
Query: 117 CPDEMGWKPQKVPIVPSDGPISRIRETTL-PVEEITKTL 154
CPDE+GW+PQ++PIV DG I R+ P+ I K L
Sbjct: 183 CPDELGWQPQQLPIVLEDGGIF*TRKNFFGPLMAILKIL 299
Score = 103 bits (257), Expect(2) = 7e-49
Identities = 49/68 (72%), Positives = 57/68 (83%)
Frame = +1
Query: 152 KTLATKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGNKSLFVHVPLFFTINEETQMQFAA 211
K+L YDVM S +AGRFVCNYVYYHSLRFAEQ GNKSLFVHVPLF I++ETQM+F A
Sbjct: 292 KSLKKGAYDVMISGNAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFARIDQETQMRFTA 471
Query: 212 SLLEVLAN 219
SLL+ +A+
Sbjct: 472 SLLDAIAS 495
>CA937085 similar to GP|27261098|dbj OJ1340_C08.26 {Oryza sativa (japonica
cultivar-group)}, partial (11%)
Length = 433
Score = 56.6 bits (135), Expect = 9e-09
Identities = 34/64 (53%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +2
Query: 62 QGALVPLYQTLQSAIIAKESESSSSNKIIWL--------HFGVNSGATRFAIERQAVNEA 113
QG + Q L+S S+S N WL HFGVNS ATRFAIERQAVNEA
Sbjct: 242 QGIFLGWIQYLKSQTFILCFISTSINLTFWLFLIMFV*LHFGVNSAATRFAIERQAVNEA 421
Query: 114 TFRC 117
TFRC
Sbjct: 422 TFRC 433
>TC226215 homologue to UP|Q6S4R9 (Q6S4R9) Allantoinase , partial (23%)
Length = 604
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 1/43 (2%)
Frame = +2
Query: 84 SSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCP-DEMGWKP 125
SSS+ +IW SG F +E++ N R D WKP
Sbjct: 20 SSSDVVIWEEIWTYSGTIVFIVEQETCNTGGVRIKGDHCSWKP 148
>TC226216 homologue to UP|Q6S4R9 (Q6S4R9) Allantoinase , partial (61%)
Length = 1367
Score = 29.3 bits (64), Expect = 1.5
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 1/43 (2%)
Frame = +1
Query: 84 SSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCP-DEMGWKP 125
SSS+ +IW SG F +E++ N R D WKP
Sbjct: 709 SSSDVVIWEEIWTYSGTIVFIVEQETCNTGGVRIKGDHCSWKP 837
>TC218089
Length = 1393
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Frame = -3
Query: 154 LATKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGNKSLFVHVP--LFFTINEETQMQFAA 211
LATK +D + F +V HSL + N +L ++VP L+ +N + ++
Sbjct: 782 LATKAFDSQSRQHDQSFHHLFVSVHSLLLGDSNLTANLMLYVPF*LYQRVNADHEIHCHQ 603
Query: 212 SLLEVLANV 220
S L N+
Sbjct: 602 STFVCLGNL 576
>BI788249 homologue to GP|20513375|dbj glyceraldehyde-3-phosphate
dehydrogenase {Chamaecyparis pisifera}, partial (37%)
Length = 421
Score = 27.7 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -3
Query: 172 CNYVYYHSLRFAEQNGNKSLFVHVPLF 198
C Y+Y HSL + E + K LF +P F
Sbjct: 302 CIYLYPHSLSYQETSFTKFLFNAIPAF 222
>BQ133974
Length = 407
Score = 27.7 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 25/38 (64%)
Frame = +1
Query: 53 SCSILDTAGQGALVPLYQTLQSAIIAKESESSSSNKII 90
S I++T G+G +VP T++ +I +E ESS ++K +
Sbjct: 136 SSMIMNTIGEGRIVPSEVTVK--LILREMESSDNHKFL 243
>TC218613 similar to UP|ICE1_ARATH (Q9LSE2) Transcription factor ICE1
(Inducer of CBF expression 1) (Basic helix-loop-helix
protein 116) (bHLH116) (AtbHLH116), partial (40%)
Length = 1147
Score = 27.7 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 23 GVSENPTETIVNNLTEYVKKKGLP 46
GVS N T++ L + KKKG+P
Sbjct: 153 GVSSNANSTVITGLDQKGKKKGMP 224
>TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
(83%)
Length = 1070
Score = 27.7 bits (60), Expect = 4.4
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Frame = -3
Query: 3 SEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGL--AIGSCSILDTA 60
S GP TV I GF VS NP + ++K KGL S S + T
Sbjct: 756 SRGPGPTAITVPIDGFSLVASVSNNPPAVFSSASATFIKTLSF-KGLRSLTSSVSRIPTM 580
Query: 61 GQGALVPLYQTLQSAIIAKESESSSSNKIIWL 92
+ ++ L S + E ++ + L
Sbjct: 579 SSSFRIRCFEPLNSTSVPAYFEYTTCKPVFTL 484
>TC230904 similar to UP|Q6NMK6 (Q6NMK6) At4g25280, partial (35%)
Length = 421
Score = 26.9 bits (58), Expect = 7.5
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 56 ILDTAGQGALVPLYQTLQSAIIAKESESSSSNKII 90
I++T G+G +VP T++ +I +E ESS ++K +
Sbjct: 304 IMNTIGEGRIVPSEVTVK--LILREMESSDNHKFL 402
>TC227504
Length = 885
Score = 26.9 bits (58), Expect = 7.5
Identities = 21/88 (23%), Positives = 35/88 (38%), Gaps = 2/88 (2%)
Frame = +1
Query: 105 IERQAVNEATFRCPDEMGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKG--YDVM 162
I + A+ + T WKP+K I P + + + K LAT+G + +
Sbjct: 367 IGKDAIMQFTHSSSRRWAWKPEKSSIWPGNSAM------------LGKKLATRGNKQESI 510
Query: 163 TSDDAGRFVCNYVYYHSLRFAEQNGNKS 190
T F+CN +S F ++S
Sbjct: 511 TDPLLSPFICNVPIPNSNNFHPDENSRS 594
>BE555340 similar to GP|20340237|gb protein phosphatase 2c-like protein
{Thellungiella halophila}, partial (32%)
Length = 374
Score = 26.6 bits (57), Expect = 9.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 159 YDVMTSDDAGRFVCNYVYYHSLRFAEQNGNKS 190
YD + R+VC++++ H RFA + + S
Sbjct: 161 YDGHGGPETSRYVCDHLFQHLKRFASEQKSMS 256
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,163,724
Number of Sequences: 63676
Number of extensions: 115857
Number of successful extensions: 537
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of query: 226
length of database: 12,639,632
effective HSP length: 94
effective length of query: 132
effective length of database: 6,654,088
effective search space: 878339616
effective search space used: 878339616
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC147011.8