BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147010.4 - phase: 0 /pseudo
(618 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA851073 64 3e-10
BI974689 61 1e-09
CO986021 57 3e-08
TC222789 55 7e-08
TC233392 55 1e-07
TC222557 55 1e-07
CO979823 52 6e-07
TC213061 52 6e-07
TC231841 52 1e-06
BG404993 51 1e-06
BG881873 51 1e-06
AW423846 51 2e-06
TC213899 50 3e-06
TC223713 49 5e-06
TC233956 49 9e-06
BU765000 48 1e-05
TC211809 48 1e-05
AW595917 48 1e-05
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 47 2e-05
TC222857 47 2e-05
>CA851073
Length = 633
Score = 63.5 bits (153), Expect = 3e-10
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Frame = +1
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFFECPFA 415
IWKLK+PP+ W + + PTR LL + + N C C E+ H+FF C
Sbjct: 139 IWKLKIPPRAAVFSWRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMT 318
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQRLTSLFW-----SLWKHRNL 470
+W + W I LS + ++ V F + F A N +W S+WKHRNL
Sbjct: 319 RGLWWESMRWNQIVGPLSVSPASHFVQF--CDGFGAGRNHTRWCGWWIALTSSIWKHRNL 492
>BI974689
Length = 409
Score = 61.2 bits (147), Expect = 1e-09
Identities = 29/62 (46%), Positives = 40/62 (63%), Gaps = 1/62 (1%)
Frame = -1
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTNCVSCPSNHEDMS-HIFF 410
G W IW LKVPPK K+L+ + R P+RVRL KG+QCP+ C C +N E + ++ F
Sbjct: 394 GNWKKIWALKVPPKVKHLIRRIQRDCLPSRVRLHAKGVQCPSTCAFCHNNLESLDVNM*F 215
Query: 411 EC 412
+C
Sbjct: 214 QC 209
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -3
Query: 410 FECPFAIHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELN-QRLTSLFWSLWKHR 468
F C + VW + LW IQ + + +IF L++ + + + + + ++W+ +
Sbjct: 236 FGCEHVVSVWMASGLWPKIQQQVHNAEVIQQLIFPLMDALNLDQDYNK*AIILRTIWRRQ 57
Query: 469 NLRAWEDVTEVSVVVV 484
N + WEDV V+ +
Sbjct: 56 NEKVWEDVETAPVMAM 9
>CO986021
Length = 900
Score = 56.6 bits (135), Expect = 3e-08
Identities = 33/119 (27%), Positives = 54/119 (44%), Gaps = 6/119 (5%)
Frame = -1
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPT-NCVSCPSNHEDMSHIFFECPFA 415
+WKLK+PP+ + W + R R LL + + C C ++ E+ H+FF C
Sbjct: 672 LWKLKIPPRAELFSWRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMT 493
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQRLTSLFW-----SLWKHRN 469
I +W + W A +A + F + F A+ N L+W ++W+HRN
Sbjct: 492 IGLWWESMNWTRTLGAFLDDPAAHFIQFS--DGFGAQRNHNRRCLWWIALTSTIWQHRN 322
>TC222789
Length = 954
Score = 55.5 bits (132), Expect = 7e-08
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQ-CPTNCVSCPSNHEDMSHIFFECPFA 415
+WKLKVP K++ W + R PT+V L + IQ +C C + ED H+FF C
Sbjct: 362 LWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRNVEEDAGHLFFHCSKI 541
Query: 416 IHVW*MTSLWGTIQHAL 432
I +W + W I AL
Sbjct: 542 IPIWWESLSWVNISGAL 592
>TC233392
Length = 1145
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/145 (29%), Positives = 61/145 (41%), Gaps = 9/145 (6%)
Frame = -1
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFF 410
G +WKLK+P K W + R PT+ L + + + C C ED SHIF
Sbjct: 560 GALQDLWKLKIPAKASIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFL 381
Query: 411 ECPFAIHVW*MTSLWGTIQHALSSTTSAINVIFMLLETF-----SAELNQRLT---SLFW 462
EC +W + W S S IN L+ S N+ T +L W
Sbjct: 380 ECNKIRPLWWESQTW-----VRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTW 216
Query: 463 SLWKHRNLRAWEDVTEVSVVVVERA 487
SLWKHRN +++ + ++E A
Sbjct: 215 SLWKHRNQVIFQNAQFNGIKLLEDA 141
>TC222557
Length = 1002
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Frame = +1
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPT-NCVSCPSNHEDMSHIFFECPFA 415
+W+LK+P K W + + PT+ L + +Q C C E+ SH+FF CP
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLFFNCPRI 618
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQR----LTSLFWSLWKHRN 469
+ +W + W T + S N + L + L R +L WS+W+HRN
Sbjct: 619 LPLWWESLAW-TKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWVALTWSIWRHRN 789
>CO979823
Length = 853
Score = 52.4 bits (124), Expect = 6e-07
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Frame = -2
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFFECPFA 415
IWKLK+P K W + R PT+ L + + C C + E +H+FF C
Sbjct: 591 IWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKT 412
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAE-LNQR-----LTSLFWSLWKHRN 469
+ +W + W ++ A+ T F+ T A+ L + +L W++W+HRN
Sbjct: 411 LPLWWESMSWVNLKTAMPQTP---RQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRN 241
Query: 470 LRAWEDVTEVSVVVVERA 487
+++ T V+E A
Sbjct: 240 KVVFQNATFHGNKVLEDA 187
>TC213061
Length = 823
Score = 52.4 bits (124), Expect = 6e-07
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Frame = +2
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFFECPFA 415
+WKLKVP K W + + PTR L K ++ C C S E SH+FF C
Sbjct: 239 LWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKI 418
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQRL---------TSLFWSLWK 466
+ +W + W + A S E+ Q L +L W++WK
Sbjct: 419 LPIWWESLSWVKLVGAFPHHPR------HHFHQHSHEVYQGLQGNRWKWWWLALTWTIWK 580
Query: 467 HRN 469
HRN
Sbjct: 581 HRN 589
>TC231841
Length = 791
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/126 (26%), Positives = 49/126 (37%), Gaps = 8/126 (6%)
Frame = +3
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQC-PTNCVSCPSNHEDMSHIFF 410
G + +WKLK+P K W + R PTR L K I+ C C S E +H+FF
Sbjct: 159 GVFEELWKLKLPSKITIFAWRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFF 338
Query: 411 ECPFAIHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQRLT-------SLFWS 463
C VW + W + + L + R + +L W+
Sbjct: 339 HCSRIAPVWWESLSWVNLLGVFPNHPRQ----HFLQHIYGVTAGMRASRWKWWWLALTWT 506
Query: 464 LWKHRN 469
+WK RN
Sbjct: 507 IWKQRN 524
>BG404993
Length = 412
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFF 410
G + +WKLK+PPK W + PT+V L + ++ + C C ++ ED +H+FF
Sbjct: 236 GIFVQLWKLKIPPKAPVFTWRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFF 57
Query: 411 ECPFAIHVW*MTSLW 425
C + W + W
Sbjct: 56 NCNKTLPFWWESLSW 12
>BG881873
Length = 415
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +1
Query: 377 FQPTRVRLLDKGIQCPTNCVSCPSNHEDMSHIFFECPFAIHVW*MTSLWGTIQHALSSTT 436
FQ R L++ + C + CV C + E +I FA W +LW + L+
Sbjct: 13 FQQERTLRLER-VGCSSLCVICEGHLETT*NILIGGEFAHSCWKEVNLWHKVDQMLNGVE 189
Query: 437 SAINVIFMLLETFSAELNQRLTSLFWSLWKHRNLRAWEDVTEVSV 481
S ++IF FS + L + WSL K RN++ W + +E V
Sbjct: 190 SLKDLIFKCTRAFSDQQR*LLFMILWSLRKSRNVKLWGNNSEAQV 324
>AW423846
Length = 385
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Frame = +3
Query: 359 KLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQC-PTNCVSCPSNHEDMSHIFFECPFAIH 417
++KVP K VW + R PT+ L + ++ C C + ED +H+FF C +
Sbjct: 3 EVKVPSKAAFFVWRLIRDRLPTKTNLHRRHVEIHDLTCPFCKNKEEDAAHLFFTCSKIMP 182
Query: 418 VW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQR----LTSLFWSLWKHRN 469
+W + W T A ++ + +L Q+ TSL WS+W+HRN
Sbjct: 183 LWWASLSW-TNTTAPFPENPHMHFLQQVLRNGKDTSYQKWQCWWTSLTWSIWQHRN 347
>TC213899
Length = 497
Score = 50.1 bits (118), Expect = 3e-06
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQ-CPTNCVSCPSNHEDMSHIFF 410
G + +WKLKVP K W + + PTR+ L + I+ ++C C E H+FF
Sbjct: 54 GAFEELWKLKVP*KIAAFAWRLLKDRLPTRINL*KRQIEMVESSCPFCSLVEESAGHLFF 233
Query: 411 ECPFAIHVW*MTSLW 425
+C I VW + W
Sbjct: 234 QCSKIIQVWWESLSW 278
>TC223713
Length = 420
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/71 (36%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Frame = +1
Query: 359 KLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPT-NCVSCPSNHEDMSHIFFECPFAIH 417
KLKVP KF W + R PT+ L + I+ +C C + E+ H+FF C I
Sbjct: 115 KLKVPIKFAVFAWRLLRDRLPTKANLHRRQIEVTNRSCPFCSNMEEEAGHLFFHCSKIIP 294
Query: 418 VW*MTSLWGTI 428
+W TS W I
Sbjct: 295 IWWETSSWVNI 327
>TC233956
Length = 757
Score = 48.5 bits (114), Expect = 9e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 350 YVGFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHI 408
++GF +W++KVPPK + VW + PT+ L+ + IQ + C C S E SH+
Sbjct: 152 HLGF-KKLWEIKVPPKALSFVWRLLWDRLPTKDNLIKRQIQVEDDLCPFCHSQSETASHL 328
Query: 409 FFECPFAIHVW 419
FF C + +W
Sbjct: 329 FFTCGKIMPLW 361
>BU765000
Length = 425
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 352 GFWSGIWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTN-CVSCPSNHEDMSHIFF 410
G + +WKLKVPPK W + + PTR L K ++ C C + E H+FF
Sbjct: 44 GEFKELWKLKVPPKVAVFAWRLLKDRLPTRDNLRRKQVELHEYLCPFCRTMEESACHLFF 223
Query: 411 ECPFAIHVW*MTSLW 425
C + VW + W
Sbjct: 224 HCRKVLPVWWESLSW 268
>TC211809
Length = 895
Score = 48.1 bits (113), Expect = 1e-05
Identities = 32/120 (26%), Positives = 51/120 (41%), Gaps = 7/120 (5%)
Frame = +2
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQC-PTNCVSCPSNHEDMSHIFFECPFA 415
+W LK+P K W + + PT L + ++ + C C S+ ED +H+FF C
Sbjct: 281 LWNLKIPSKAIVFAWRLIKDRLPTWTNLRVRQVELNDSRCPLCNSSEEDAAHLFFHCTKT 460
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSA------ELNQRLTSLFWSLWKHRN 469
+W T W ++L + F+ + SA +L W +WKHRN
Sbjct: 461 EXLWWETQSW---VNSLGAFPHNPKDHFLQHDNRSAGGVXARRWKCLWVALTWVIWKHRN 631
>AW595917
Length = 404
Score = 48.1 bits (113), Expect = 1e-05
Identities = 21/69 (30%), Positives = 34/69 (48%)
Frame = +1
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQCPTNCVSCPSNHEDMSHIFFECPFAI 416
+WKLK+PPK W + + PT+ L + + C C ++ ED +H+FF C +
Sbjct: 7 LWKLKIPPKAAVFTWRLIKDQLPTKANLRRQMEISDSLCPLCNNSKEDATHLFFNCSKTL 186
Query: 417 HVW*MTSLW 425
W + W
Sbjct: 187 PFWWESLSW 213
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 47.4 bits (111), Expect = 2e-05
Identities = 33/114 (28%), Positives = 48/114 (41%), Gaps = 4/114 (3%)
Frame = +2
Query: 360 LKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQ-CPTNCVSCPSNHEDMSHIFFECPFAIHV 418
+KVP K VW + R PTR +L + +Q +C C E+ H+FF C +
Sbjct: 65 IKVPNKIAIFVWRLIRDRLPTRHKLQRRQVQVADMSCPFCRVKEENAGHLFFHCTKIQPL 244
Query: 419 W*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQ---RLTSLFWSLWKHRN 469
W W ++ A T M L+ N+ +L WS+WK RN
Sbjct: 245 WWEAMSWINLKGAAPLTPKMNFNQHMGLQADGVRSNRWQCWWMALTWSIWKTRN 406
>TC222857
Length = 657
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Frame = -3
Query: 357 IWKLKVPPKFKNLVWCMCRGFQPTRVRLLDKGIQ-CPTNCVSCPSNHEDMSHIFFECPFA 415
+WK+K+P KF W + PT+ L + +Q C C E SH+F C
Sbjct: 613 LWKIKIPSKFLMFAWRLLWDRLPTKANLRARQVQISDLTCPFCRRVEETASHMFIHCIKT 434
Query: 416 IHVW*MTSLWGTIQHALSSTTSAINVIFMLLETFSAELNQR-----LTSLFWSLWKHRNL 470
+W T W +Q L + + + F L+ A + R ++ WS+W+ RN
Sbjct: 433 QPIWWETMNWINMQGPLPWSITDHFMQFSSLK--EAGIRSRRWQWWWMAVTWSIWQLRNS 260
Query: 471 RAWEDVTEVSVVVVERA 487
+ + T +VE A
Sbjct: 259 IVFSNATFDGNKLVEDA 209
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.364 0.161 0.683
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,538,504
Number of Sequences: 63676
Number of extensions: 646042
Number of successful extensions: 10528
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 4292
Number of HSP's successfully gapped in prelim test: 532
Number of HSP's that attempted gapping in prelim test: 5875
Number of HSP's gapped (non-prelim): 5346
length of query: 618
length of database: 12,639,632
effective HSP length: 103
effective length of query: 515
effective length of database: 6,081,004
effective search space: 3131717060
effective search space used: 3131717060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC147010.4