BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147010.10 - phase: 1
(150 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219811 similar to UP|Q6NQC3 (Q6NQC3) At3g48120, partial (13%) 38 0.002
TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 37 0.003
TC214538 36 0.008
TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 36 0.008
TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein -... 36 0.008
TC205244 similar to UP|Q6IDC4 (Q6IDC4) At5g27860, partial (39%) 35 0.010
TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 34 0.023
BE660842 similar to GP|11139266|gb PRLI-interacting factor K {Ar... 33 0.051
TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), ... 32 0.087
TC214672 similar to GB|AAP86663.1|32700026|AY230836 26S proteaso... 32 0.15
TC217129 homologue to PIR|T44259|T44259 lipoic acid synthase [i... 31 0.19
TC216554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {A... 31 0.25
TC213562 similar to UP|Q70US4 (Q70US4) NADH dehydrogenase 6, par... 30 0.33
NP004853 nodulin 30 0.33
TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 30 0.33
TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein R... 30 0.33
TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (... 30 0.33
TC228235 homologue to UP|Q9M607 (Q9M607) Transcription factor, p... 30 0.33
TC218336 similar to UP|Q43085 (Q43085) Phosphoribosylanthranilat... 30 0.43
BM732384 30 0.43
>TC219811 similar to UP|Q6NQC3 (Q6NQC3) At3g48120, partial (13%)
Length = 567
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +3
Query: 10 KNQKTENSSEILRDSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEK 69
K T S+ + ++HH++ + +S V +S +D RR R R+
Sbjct: 228 KASSTAPSNSEKQAQLQSIHHKLK----KKPSSESRVSSSDSDRSRRRSRDRYRESRRRS 395
Query: 70 KTEPKQHASKQHASKRARKQRARKQRARKQRARNK-NVKSVKNAKNTK 116
++ ++H ++ +R+R RKQR ++ A ++ V K KN +
Sbjct: 396 RSR-ERHRHRERGRRRSRSVSPRKQRRSEKDANDRGKVSETKKRKNAE 536
>TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (4%)
Length = 2040
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 62 GSAQRKEKKTEPKQHASKQHASK--RARKQRARKQRARKQRARNKNVKSVKNAKNTKQQR 119
G A+ EKK EPK+ K+ K A+K+ +K+ +K+ + + K + K ++++
Sbjct: 1221 GPAKEPEKKEEPKKEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEEPKKEEEKKEEEKKK 1400
Query: 120 QA 121
+A
Sbjct: 1401 EA 1406
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/83 (22%), Positives = 38/83 (44%)
Frame = +1
Query: 56 RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNT 115
RR+R +QRK+++ ++ K +R RK +K+R RK + + K + + K
Sbjct: 1240 RRKR----SQRKKRRKRSQRKRVKPKRKRRKRKSLRKKKRRRKSQRKKKRRRKRRRRKRH 1407
Query: 116 KQQRQAKSHRDREVTAVVLPLSP 138
Q + + +++P P
Sbjct: 1408 HPLHQTQF*SWSRLIGLIIPT*P 1476
>TC214538
Length = 348
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -2
Query: 20 ILRDSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQ-TGSAQRKEKKTEPKQHAS 78
I+ TNL + T I + S E K +S GR++++ G++Q K + + ++ +
Sbjct: 317 IMSSHSTNLEPKS*LTIILTLGSKKEEKENSQSKSGRKQKEKKGNSQSKSGRKQKEKKGN 138
Query: 79 KQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNTKQ 117
Q SK RK++ ++ + + +N ++V+ T Q
Sbjct: 137 SQ--SKNGRKKKRKEGKKAPDQGSKENRRNVQRGLWTGQ 27
>TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (5%)
Length = 928
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +3
Query: 62 GSAQRKEKKTEPKQHASKQHASKR--------ARKQRARKQRARKQRARNKNVKSVKNAK 113
G A+ EKK EPK+ K+ K+ A+K+ +K+ +K+ + + K + K
Sbjct: 369 GPAKEPEKKEEPKKEEPKKEEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEETKKEEEKK 548
Query: 114 NTKQQRQA 121
+++++A
Sbjct: 549 EEEKKKEA 572
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
Frame = +3
Query: 59 RQTGSAQRKE-KKTEPKQHASKQHASKRARKQRARKQRARKQRA 101
++ G A+++E KK EPK+ K+ +K K+ +K+ +K+ A
Sbjct: 450 KKEGEAKKEEEKKEEPKKEEEKKEETK---KEEEKKEEEKKKEA 572
>TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (19%)
Length = 1344
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 74 KQHASKQHASKR--ARKQRARKQRARKQRARNKNVKSVKNAKNT 115
K+ + ++H KR RKQR R Q +R +RAR K+ +S +++ +T
Sbjct: 13 KRRSKRKHGKKRKIGRKQRKRSQHSRSRRARRKSRRSSEDSSDT 144
>TC205244 similar to UP|Q6IDC4 (Q6IDC4) At5g27860, partial (39%)
Length = 625
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/156 (19%), Positives = 64/156 (40%), Gaps = 30/156 (19%)
Frame = +1
Query: 1 QRKQIHQEHKNQKTENSSEILRDSCT-----------NLHHRIDSTAIQSANSSPEVKNS 49
+R++ H H+ + ++S +I + S + + HH DS + S + ++S
Sbjct: 106 RRRRRHHRHRRGRDKDSLKIRKKSKSQSQSRGKRRRRHYHHSSDSYSSSSLSDYSRSESS 285
Query: 50 S-----TDHGGRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQRARKQ----- 99
S T H +R +++ ++ ++K + K H K K KQ + + Q
Sbjct: 286 SDSEHETSHRSKRHKKSDRPKKNKEKDQSKSHRHKWQKHKVKEKQHDERSSSPVQLSKFL 465
Query: 100 ---------RARNKNVKSVKNAKNTKQQRQAKSHRD 126
R+ K + + TK+ + A+S R+
Sbjct: 466 GRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRN 573
>TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1200
Score = 34.3 bits (77), Expect = 0.023
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +3
Query: 56 RRRRQTGSAQRKEKK------------TEPKQHASK--QHASKRARKQRARKQRARKQRA 101
+ R++ A+ KEK+ K++A K Q A+ +A+K+ K++ R++RA
Sbjct: 453 KARKEEEEAKLKEKRRLEEIEKAKEALQRKKRNAEKAQQRAALKAQKEAELKEKEREKRA 632
Query: 102 RNKNVKSVKNAKNTKQQRQAKSHRDREVTAV 132
+ K + +A + Q +H +T+V
Sbjct: 633 KKKERRKTSSAVTAENTEQESAHTTETLTSV 725
>BE660842 similar to GP|11139266|gb PRLI-interacting factor K {Arabidopsis
thaliana}, partial (26%)
Length = 854
Score = 33.1 bits (74), Expect = 0.051
Identities = 15/38 (39%), Positives = 27/38 (70%)
Frame = +3
Query: 84 KRARKQRARKQRARKQRARNKNVKSVKNAKNTKQQRQA 121
+RAR++ ++QR RK+RAR K +K K + ++Q++A
Sbjct: 63 RRAREKLEKEQRERKERARLKLLKEKKAKEEAQKQKEA 176
>TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), partial (7%)
Length = 1040
Score = 32.3 bits (72), Expect = 0.087
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +3
Query: 56 RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ----RARKQRARKQRARNKNVKSVKN 111
RR+R + +R+ KK+ ++ K KR RKQ R RKQ+ R++R + K K +
Sbjct: 666 RRKRNSKHWRRRRKKSLKRRRKLK*R--KRRRKQK*RRRRRKQK*RRRRRKLKWRKRRRK 839
Query: 112 AKNTKQQRQAKSHRDR 127
K +++R+ K + R
Sbjct: 840 LKGRRRRRKLKWRKRR 887
Score = 30.4 bits (67), Expect = 0.33
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 56 RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ----RARKQRARKQRARNKNVKSVKN 111
RRRR+ +++ +K + ++ K KR RKQ R RK + RK+R + K K +
Sbjct: 795 RRRRRKLKWRKRRRKLKGRRRRRKLKWRKRRRKQK**KRRRKLK*RKRRRKLK*RKRRRK 974
Query: 112 AKNTKQQRQAKSHRDR 127
K K++R+ + R
Sbjct: 975 QK**KRRRKLMRRKRR 1022
>TC214672 similar to GB|AAP86663.1|32700026|AY230836 26S proteasome subunit
RPN6a {Arabidopsis thaliana;} , partial (95%)
Length = 1703
Score = 31.6 bits (70), Expect = 0.15
Identities = 19/64 (29%), Positives = 34/64 (52%)
Frame = -1
Query: 74 KQHASKQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNTKQQRQAKSHRDREVTAVV 133
K H +H + ++ ++R K + R K + S + +QQ+QA HR + +T V+
Sbjct: 1646 KWH*PPKHLNVQSHRKRFTTIEFNKNKNR*KQMIS*SQLRRKQQQQQAT*HRSK-ITRVL 1470
Query: 134 LPLS 137
+PLS
Sbjct: 1469 MPLS 1458
>TC217129 homologue to PIR|T44259|T44259 lipoic acid synthase [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(27%)
Length = 517
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +2
Query: 37 IQSANSSPEVKNSSTDHG-----GRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRA 91
I + +SPE N+ D RRRR+ S++R + +EP +++ +R R
Sbjct: 8 IHGSEASPETSNARRDSSVHLRRSRRRRRRRSSRRLWRVSEPGWRRNRRRCRISSRLNRT 187
Query: 92 RKQRARKQRARNK 104
+ + R R R++
Sbjct: 188 ARTQWRSGRRRSR 226
>TC216554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Arabidopsis
thaliana;} , partial (94%)
Length = 629
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Frame = -2
Query: 46 VKNSSTDHGGRRRRQTGSAQRKEKKTEPKQH---------------ASKQHASKRARKQR 90
+ S + G +TG A+ +E++ E + + +S++HASKR ++QR
Sbjct: 550 ITKSKCNGGAASN*ETGKAKEREREREVETNFIESNAKTNSFEFVISSQKHASKRQQQQR 371
Query: 91 ARKQRARK 98
A KQ +++
Sbjct: 370 AAKQPSKQ 347
>TC213562 similar to UP|Q70US4 (Q70US4) NADH dehydrogenase 6, partial (18%)
Length = 546
Score = 30.4 bits (67), Expect = 0.33
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Frame = -2
Query: 65 QRKEKKTEPKQHASKQHASKRARKQRAR-KQRARKQRARNKNVKSVKNAKNTKQQRQAKS 123
++K+KKTEPK Q K+ +K + K+++ KQ+ +NK +A ++
Sbjct: 455 EKKKKKTEPKIKKECQTEKKKKKKTEPKIKKKSVKQKKQNKKTGCCHHAVCSR----CCC 288
Query: 124 HRDREVTAVVL 134
HR R + A ++
Sbjct: 287 HRRRSLLACMM 255
>NP004853 nodulin
Length = 1431
Score = 30.4 bits (67), Expect = 0.33
Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Frame = +2
Query: 31 RIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQR 90
++ S+A Q + P K + +RR+ R+ K+ + K+H +QH S +K +
Sbjct: 884 KLSSSAKQVLSMKPRYKRQTGSCTRSKRRRKQYCLRRRKRRKRKKH*RRQHFSVGNKKLK 1063
Query: 91 AR-KQRARKQR 100
QR R+Q+
Sbjct: 1064QNYLQRKRRQK 1096
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 56 RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ---RARKQRARKQRARNKNVKSVKNA 112
R +RQTGS R SKR RKQ R RK+R RK+ R ++ SV N
Sbjct: 926 RYKRQTGSCTR----------------SKRRRKQYCLRRRKRRKRKKH*RRQHF-SVGNK 1054
Query: 113 KNTKQQRQAK 122
K + Q K
Sbjct: 1055KLKQNYLQRK 1084
>TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1330
Score = 30.4 bits (67), Expect = 0.33
Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 14/84 (16%)
Frame = +3
Query: 56 RRRRQTGSAQRKEKK------------TEPKQHASK--QHASKRARKQRARKQRARKQRA 101
+ R + A+ KEK+ K++A K Q A+ +A+K+ K++ R++RA
Sbjct: 696 KARMEEEEAKLKEKRRLEEIEKAKEALLRKKRNAEKAQQRAALKAQKEAELKEKEREKRA 875
Query: 102 RNKNVKSVKNAKNTKQQRQAKSHR 125
+ K + +A T + + KSHR
Sbjct: 876 KKKERRKAGSAV-TAENTEQKSHR 944
>TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1, partial
(61%)
Length = 1517
Score = 30.4 bits (67), Expect = 0.33
Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 3/54 (5%)
Frame = +1
Query: 56 RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQR---ARKQRARNKNV 106
RRRR+ G +Q + T ++HA+K H RA ++A+ +R AR +R R++ +
Sbjct: 550 RRRRRIGVSQLAFQ-TRDRRHAAKAHVQ*RAGAEQAQPRRRPAARLRRRRHRKL 708
>TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1),
partial (3%)
Length = 784
Score = 30.4 bits (67), Expect = 0.33
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 55 GRRRRQTGSAQRKE--KKTEPKQHASKQHASKRARKQRARKQRARKQRARNK 104
GRRRR+ +R ++ P++ + HAS R +++A+ AR + RN+
Sbjct: 514 GRRRRRQDLHRRPRILRRRRPRRQHRRGHASLRRHRRQAQPPEARLRHRRNQ 669
>TC228235 homologue to UP|Q9M607 (Q9M607) Transcription factor, partial (29%)
Length = 855
Score = 30.4 bits (67), Expect = 0.33
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 5/70 (7%)
Frame = +2
Query: 44 PEVKNSSTDHGGRRRRQTGSAQRKEKKT----EPKQHASKQ-HASKRARKQRARKQRARK 98
P N+ HG RRRQ+ + EKK +P H S+ HA +RAR R +K
Sbjct: 14 PVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKK 193
Query: 99 QRARNKNVKS 108
N + S
Sbjct: 194 LENYNSDATS 223
>TC218336 similar to UP|Q43085 (Q43085) Phosphoribosylanthranilate transferase
(Fragment) , partial (89%)
Length = 1156
Score = 30.0 bits (66), Expect = 0.43
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = -3
Query: 24 SCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHAS 83
SCTN H I++T SAN S + H ++Q + K+ QHA +
Sbjct: 1130 SCTNGQHLINNTK*DSANDSTTTTKN*FKHW---QQQISFQDSRTHKSVHLQHAVCERRQ 960
Query: 84 KRARKQRARKQRARKQRARNKNVKSVKN 111
R+R+ A K ++ S KN
Sbjct: 959 PTEEIHRSRRHLAPKHGVPHQVKSSQKN 876
>BM732384
Length = 424
Score = 30.0 bits (66), Expect = 0.43
Identities = 21/82 (25%), Positives = 39/82 (46%)
Frame = -2
Query: 23 DSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHA 82
DS + HH ++ A +S +S P + DH RRR+ S++R + + ++
Sbjct: 315 DSSSYSHHP-ETLAPESPSSRPPAR----DHR*LRRRRRSSSRRGNHQKRSHRRRGRKRG 151
Query: 83 SKRARKQRARKQRARKQRARNK 104
R ++R R R + +R R +
Sbjct: 150 CCRRGRRRGRIGRKKGRRCRER 85
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.118 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,041,918
Number of Sequences: 63676
Number of extensions: 49637
Number of successful extensions: 626
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of query: 150
length of database: 12,639,632
effective HSP length: 89
effective length of query: 61
effective length of database: 6,972,468
effective search space: 425320548
effective search space used: 425320548
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147010.10