Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147010.10 - phase: 1 
         (150 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC219811 similar to UP|Q6NQC3 (Q6NQC3) At3g48120, partial (13%)        38  0.002
TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ...    37  0.003
TC214538                                                               36  0.008
TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ...    36  0.008
TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein -...    36  0.008
TC205244 similar to UP|Q6IDC4 (Q6IDC4) At5g27860, partial (39%)        35  0.010
TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p...    34  0.023
BE660842 similar to GP|11139266|gb PRLI-interacting factor K {Ar...    33  0.051
TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), ...    32  0.087
TC214672 similar to GB|AAP86663.1|32700026|AY230836 26S proteaso...    32  0.15
TC217129 homologue to PIR|T44259|T44259 lipoic acid synthase  [i...    31  0.19
TC216554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {A...    31  0.25
TC213562 similar to UP|Q70US4 (Q70US4) NADH dehydrogenase 6, par...    30  0.33
NP004853 nodulin                                                       30  0.33
TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p...    30  0.33
TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein R...    30  0.33
TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (...    30  0.33
TC228235 homologue to UP|Q9M607 (Q9M607) Transcription factor, p...    30  0.33
TC218336 similar to UP|Q43085 (Q43085) Phosphoribosylanthranilat...    30  0.43
BM732384                                                               30  0.43

>TC219811 similar to UP|Q6NQC3 (Q6NQC3) At3g48120, partial (13%)
          Length = 567

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
 Frame = +3

Query: 10  KNQKTENSSEILRDSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEK 69
           K   T  S+   +    ++HH++     +  +S   V +S +D   RR R      R+  
Sbjct: 228 KASSTAPSNSEKQAQLQSIHHKLK----KKPSSESRVSSSDSDRSRRRSRDRYRESRRRS 395

Query: 70  KTEPKQHASKQHASKRARKQRARKQRARKQRARNK-NVKSVKNAKNTK 116
           ++  ++H  ++   +R+R    RKQR  ++ A ++  V   K  KN +
Sbjct: 396 RSR-ERHRHRERGRRRSRSVSPRKQRRSEKDANDRGKVSETKKRKNAE 536


>TC216149 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (4%)
          Length = 2040

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 62   GSAQRKEKKTEPKQHASKQHASK--RARKQRARKQRARKQRARNKNVKSVKNAKNTKQQR 119
            G A+  EKK EPK+   K+   K   A+K+  +K+  +K+  + +  K  +  K  ++++
Sbjct: 1221 GPAKEPEKKEEPKKEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEEPKKEEEKKEEEKKK 1400

Query: 120  QA 121
            +A
Sbjct: 1401 EA 1406



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 19/83 (22%), Positives = 38/83 (44%)
 Frame = +1

Query: 56   RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNT 115
            RR+R    +QRK+++   ++   K    +R RK   +K+R RK + + K  +  +  K  
Sbjct: 1240 RRKR----SQRKKRRKRSQRKRVKPKRKRRKRKSLRKKKRRRKSQRKKKRRRKRRRRKRH 1407

Query: 116  KQQRQAKSHRDREVTAVVLPLSP 138
                Q +      +  +++P  P
Sbjct: 1408 HPLHQTQF*SWSRLIGLIIPT*P 1476


>TC214538 
          Length = 348

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
 Frame = -2

Query: 20  ILRDSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQ-TGSAQRKEKKTEPKQHAS 78
           I+    TNL  +   T I +  S  E K +S    GR++++  G++Q K  + + ++  +
Sbjct: 317 IMSSHSTNLEPKS*LTIILTLGSKKEEKENSQSKSGRKQKEKKGNSQSKSGRKQKEKKGN 138

Query: 79  KQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNTKQ 117
            Q  SK  RK++ ++ +    +   +N ++V+    T Q
Sbjct: 137 SQ--SKNGRKKKRKEGKKAPDQGSKENRRNVQRGLWTGQ 27


>TC216150 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (5%)
          Length = 928

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +3

Query: 62  GSAQRKEKKTEPKQHASKQHASKR--------ARKQRARKQRARKQRARNKNVKSVKNAK 113
           G A+  EKK EPK+   K+   K+        A+K+  +K+  +K+  + +  K  +  K
Sbjct: 369 GPAKEPEKKEEPKKEEPKKEEEKKEEPKKEGEAKKEEEKKEEPKKEEEKKEETKKEEEKK 548

Query: 114 NTKQQRQA 121
             +++++A
Sbjct: 549 EEEKKKEA 572



 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 1/44 (2%)
 Frame = +3

Query: 59  RQTGSAQRKE-KKTEPKQHASKQHASKRARKQRARKQRARKQRA 101
           ++ G A+++E KK EPK+   K+  +K   K+  +K+  +K+ A
Sbjct: 450 KKEGEAKKEEEKKEEPKKEEEKKEETK---KEEEKKEEEKKKEA 572


>TC219587 similar to PIR|T49181|T49181 cyclophylin-like protein - Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (19%)
          Length = 1344

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 74  KQHASKQHASKR--ARKQRARKQRARKQRARNKNVKSVKNAKNT 115
           K+ + ++H  KR   RKQR R Q +R +RAR K+ +S +++ +T
Sbjct: 13  KRRSKRKHGKKRKIGRKQRKRSQHSRSRRARRKSRRSSEDSSDT 144


>TC205244 similar to UP|Q6IDC4 (Q6IDC4) At5g27860, partial (39%)
          Length = 625

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 31/156 (19%), Positives = 64/156 (40%), Gaps = 30/156 (19%)
 Frame = +1

Query: 1   QRKQIHQEHKNQKTENSSEILRDSCT-----------NLHHRIDSTAIQSANSSPEVKNS 49
           +R++ H  H+  + ++S +I + S +           + HH  DS +  S +     ++S
Sbjct: 106 RRRRRHHRHRRGRDKDSLKIRKKSKSQSQSRGKRRRRHYHHSSDSYSSSSLSDYSRSESS 285

Query: 50  S-----TDHGGRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQRARKQ----- 99
           S     T H  +R +++   ++ ++K + K H  K    K   KQ   +  +  Q     
Sbjct: 286 SDSEHETSHRSKRHKKSDRPKKNKEKDQSKSHRHKWQKHKVKEKQHDERSSSPVQLSKFL 465

Query: 100 ---------RARNKNVKSVKNAKNTKQQRQAKSHRD 126
                    R+     K +   + TK+ + A+S R+
Sbjct: 466 GRDKDDGVRRSAVSGKKILLKLEKTKEDKVAESKRN 573


>TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
          Length = 1200

 Score = 34.3 bits (77), Expect = 0.023
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
 Frame = +3

Query: 56  RRRRQTGSAQRKEKK------------TEPKQHASK--QHASKRARKQRARKQRARKQRA 101
           + R++   A+ KEK+               K++A K  Q A+ +A+K+   K++ R++RA
Sbjct: 453 KARKEEEEAKLKEKRRLEEIEKAKEALQRKKRNAEKAQQRAALKAQKEAELKEKEREKRA 632

Query: 102 RNKNVKSVKNAKNTKQQRQAKSHRDREVTAV 132
           + K  +   +A   +   Q  +H    +T+V
Sbjct: 633 KKKERRKTSSAVTAENTEQESAHTTETLTSV 725


>BE660842 similar to GP|11139266|gb PRLI-interacting factor K {Arabidopsis
           thaliana}, partial (26%)
          Length = 854

 Score = 33.1 bits (74), Expect = 0.051
 Identities = 15/38 (39%), Positives = 27/38 (70%)
 Frame = +3

Query: 84  KRARKQRARKQRARKQRARNKNVKSVKNAKNTKQQRQA 121
           +RAR++  ++QR RK+RAR K +K  K  +  ++Q++A
Sbjct: 63  RRAREKLEKEQRERKERARLKLLKEKKAKEEAQKQKEA 176


>TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), partial (7%)
          Length = 1040

 Score = 32.3 bits (72), Expect = 0.087
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
 Frame = +3

Query: 56  RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ----RARKQRARKQRARNKNVKSVKN 111
           RR+R +   +R+ KK+  ++   K    KR RKQ    R RKQ+ R++R + K  K  + 
Sbjct: 666 RRKRNSKHWRRRRKKSLKRRRKLK*R--KRRRKQK*RRRRRKQK*RRRRRKLKWRKRRRK 839

Query: 112 AKNTKQQRQAKSHRDR 127
            K  +++R+ K  + R
Sbjct: 840 LKGRRRRRKLKWRKRR 887



 Score = 30.4 bits (67), Expect = 0.33
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +3

Query: 56  RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ----RARKQRARKQRARNKNVKSVKN 111
           RRRR+    +++ +K + ++   K    KR RKQ    R RK + RK+R + K  K  + 
Sbjct: 795 RRRRRKLKWRKRRRKLKGRRRRRKLKWRKRRRKQK**KRRRKLK*RKRRRKLK*RKRRRK 974

Query: 112 AKNTKQQRQAKSHRDR 127
            K  K++R+    + R
Sbjct: 975 QK**KRRRKLMRRKRR 1022


>TC214672 similar to GB|AAP86663.1|32700026|AY230836 26S proteasome subunit
            RPN6a {Arabidopsis thaliana;} , partial (95%)
          Length = 1703

 Score = 31.6 bits (70), Expect = 0.15
 Identities = 19/64 (29%), Positives = 34/64 (52%)
 Frame = -1

Query: 74   KQHASKQHASKRARKQRARKQRARKQRARNKNVKSVKNAKNTKQQRQAKSHRDREVTAVV 133
            K H   +H + ++ ++R       K + R K + S    +  +QQ+QA  HR + +T V+
Sbjct: 1646 KWH*PPKHLNVQSHRKRFTTIEFNKNKNR*KQMIS*SQLRRKQQQQQAT*HRSK-ITRVL 1470

Query: 134  LPLS 137
            +PLS
Sbjct: 1469 MPLS 1458


>TC217129 homologue to PIR|T44259|T44259 lipoic acid synthase  [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}  , partial
           (27%)
          Length = 517

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +2

Query: 37  IQSANSSPEVKNSSTDHG-----GRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRA 91
           I  + +SPE  N+  D        RRRR+  S++R  + +EP    +++     +R  R 
Sbjct: 8   IHGSEASPETSNARRDSSVHLRRSRRRRRRRSSRRLWRVSEPGWRRNRRRCRISSRLNRT 187

Query: 92  RKQRARKQRARNK 104
            + + R  R R++
Sbjct: 188 ARTQWRSGRRRSR 226


>TC216554 similar to GB|AAO24533.1|27808506|BT003101 At2g41420 {Arabidopsis
           thaliana;} , partial (94%)
          Length = 629

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
 Frame = -2

Query: 46  VKNSSTDHGGRRRRQTGSAQRKEKKTEPKQH---------------ASKQHASKRARKQR 90
           +  S  + G     +TG A+ +E++ E + +               +S++HASKR ++QR
Sbjct: 550 ITKSKCNGGAASN*ETGKAKEREREREVETNFIESNAKTNSFEFVISSQKHASKRQQQQR 371

Query: 91  ARKQRARK 98
           A KQ +++
Sbjct: 370 AAKQPSKQ 347


>TC213562 similar to UP|Q70US4 (Q70US4) NADH dehydrogenase 6, partial (18%)
          Length = 546

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
 Frame = -2

Query: 65  QRKEKKTEPKQHASKQHASKRARKQRAR-KQRARKQRARNKNVKSVKNAKNTKQQRQAKS 123
           ++K+KKTEPK     Q   K+ +K   + K+++ KQ+ +NK      +A  ++       
Sbjct: 455 EKKKKKTEPKIKKECQTEKKKKKKTEPKIKKKSVKQKKQNKKTGCCHHAVCSR----CCC 288

Query: 124 HRDREVTAVVL 134
           HR R + A ++
Sbjct: 287 HRRRSLLACMM 255


>NP004853 nodulin
          Length = 1431

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
 Frame = +2

Query: 31  RIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQR 90
           ++ S+A Q  +  P  K  +      +RR+     R+ K+ + K+H  +QH S   +K +
Sbjct: 884 KLSSSAKQVLSMKPRYKRQTGSCTRSKRRRKQYCLRRRKRRKRKKH*RRQHFSVGNKKLK 1063

Query: 91  AR-KQRARKQR 100
               QR R+Q+
Sbjct: 1064QNYLQRKRRQK 1096



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 56  RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQ---RARKQRARKQRARNKNVKSVKNA 112
           R +RQTGS  R                SKR RKQ   R RK+R RK+  R ++  SV N 
Sbjct: 926 RYKRQTGSCTR----------------SKRRRKQYCLRRRKRRKRKKH*RRQHF-SVGNK 1054

Query: 113 KNTKQQRQAK 122
           K  +   Q K
Sbjct: 1055KLKQNYLQRK 1084


>TC227637 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
          Length = 1330

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 14/84 (16%)
 Frame = +3

Query: 56  RRRRQTGSAQRKEKK------------TEPKQHASK--QHASKRARKQRARKQRARKQRA 101
           + R +   A+ KEK+               K++A K  Q A+ +A+K+   K++ R++RA
Sbjct: 696 KARMEEEEAKLKEKRRLEEIEKAKEALLRKKRNAEKAQQRAALKAQKEAELKEKEREKRA 875

Query: 102 RNKNVKSVKNAKNTKQQRQAKSHR 125
           + K  +   +A  T +  + KSHR
Sbjct: 876 KKKERRKAGSAV-TAENTEQKSHR 944


>TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1, partial
           (61%)
          Length = 1517

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 19/54 (35%), Positives = 33/54 (60%), Gaps = 3/54 (5%)
 Frame = +1

Query: 56  RRRRQTGSAQRKEKKTEPKQHASKQHASKRARKQRARKQR---ARKQRARNKNV 106
           RRRR+ G +Q   + T  ++HA+K H   RA  ++A+ +R   AR +R R++ +
Sbjct: 550 RRRRRIGVSQLAFQ-TRDRRHAAKAHVQ*RAGAEQAQPRRRPAARLRRRRHRKL 708


>TC228914 similar to UP|DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1),
           partial (3%)
          Length = 784

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 55  GRRRRQTGSAQRKE--KKTEPKQHASKQHASKRARKQRARKQRARKQRARNK 104
           GRRRR+    +R    ++  P++   + HAS R  +++A+   AR +  RN+
Sbjct: 514 GRRRRRQDLHRRPRILRRRRPRRQHRRGHASLRRHRRQAQPPEARLRHRRNQ 669


>TC228235 homologue to UP|Q9M607 (Q9M607) Transcription factor, partial (29%)
          Length = 855

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 5/70 (7%)
 Frame = +2

Query: 44  PEVKNSSTDHGGRRRRQTGSAQRKEKKT----EPKQHASKQ-HASKRARKQRARKQRARK 98
           P   N+   HG  RRRQ+ +    EKK     +P  H S+  HA +RAR    R    +K
Sbjct: 14  PVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKK 193

Query: 99  QRARNKNVKS 108
               N +  S
Sbjct: 194 LENYNSDATS 223


>TC218336 similar to UP|Q43085 (Q43085) Phosphoribosylanthranilate transferase 
            (Fragment) , partial (89%)
          Length = 1156

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 24/88 (27%), Positives = 36/88 (40%)
 Frame = -3

Query: 24   SCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHAS 83
            SCTN  H I++T   SAN S     +   H    ++Q      +  K+   QHA  +   
Sbjct: 1130 SCTNGQHLINNTK*DSANDSTTTTKN*FKHW---QQQISFQDSRTHKSVHLQHAVCERRQ 960

Query: 84   KRARKQRARKQRARKQRARNKNVKSVKN 111
                  R+R+  A K    ++   S KN
Sbjct: 959  PTEEIHRSRRHLAPKHGVPHQVKSSQKN 876


>BM732384 
          Length = 424

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 21/82 (25%), Positives = 39/82 (46%)
 Frame = -2

Query: 23  DSCTNLHHRIDSTAIQSANSSPEVKNSSTDHGGRRRRQTGSAQRKEKKTEPKQHASKQHA 82
           DS +  HH  ++ A +S +S P  +    DH   RRR+  S++R   +    +   ++  
Sbjct: 315 DSSSYSHHP-ETLAPESPSSRPPAR----DHR*LRRRRRSSSRRGNHQKRSHRRRGRKRG 151

Query: 83  SKRARKQRARKQRARKQRARNK 104
             R  ++R R  R + +R R +
Sbjct: 150 CCRRGRRRGRIGRKKGRRCRER 85


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.308    0.118    0.310 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,041,918
Number of Sequences: 63676
Number of extensions: 49637
Number of successful extensions: 626
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of query: 150
length of database: 12,639,632
effective HSP length: 89
effective length of query: 61
effective length of database: 6,972,468
effective search space: 425320548
effective search space used: 425320548
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)


Medicago: description of AC147010.10