BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147007.6 - phase: 0 /pseudo
(1105 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 309 4e-84
CO983154 208 9e-54
BI427153 202 7e-52
CO981879 97 2e-40
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 162 6e-40
TC233822 161 1e-39
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 159 6e-39
CO981347 80 2e-27
TC207859 108 1e-23
CO986013 70 6e-22
TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 92 6e-22
BE057175 101 2e-21
TC223332 100 5e-21
AI442763 93 6e-19
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 93 6e-19
AI901012 57 8e-19
CO982898 57 2e-16
BI784757 84 3e-16
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 78 2e-14
BI701169 70 2e-13
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 309 bits (792), Expect = 4e-84
Identities = 158/276 (57%), Positives = 203/276 (73%)
Frame = +2
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
IT A+G + TGIG SP SLSLN V+FI G PFN+ S+S+LT+ NCS+TF ++SF+
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 128 IQDRSTGKTIGT*FES*GLYYLHSHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSH 187
IQ+ TG TIG ES GLYYL + S +C SP ++H RLGHP L KLK++VP L
Sbjct: 200 IQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSPKLLHERLGHPHLSKLKIMVPSLEK 379
Query: 188 LKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDF 247
+K L CESCQLGKHVR S R SPF +IH D+WGP+RVSS + Y+Y+VTFID+F
Sbjct: 380 IKDLFCESCQLGKHVRSSX-RHVESRVDSPFLVIHXDIWGPNRVSS-MSYRYFVTFIDEF 553
Query: 248 SRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGII 307
S+CT + L+K+RS + +F T + IKTQFGKTI+ILRSDNAK YFS+ + F ++ GI+
Sbjct: 554 SQCTRVFLMKERSEIL-SFLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPFXSAQGIL 730
Query: 308 HQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAP 343
HQ SCPHTPQQN +AERK+RHLV+T RTLL++A+ P
Sbjct: 731 HQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>CO983154
Length = 568
Score = 208 bits (530), Expect = 9e-54
Identities = 98/163 (60%), Positives = 124/163 (75%)
Frame = +3
Query: 314 HTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYS 373
HTPQQNG+AERK+RHL++T R+L++N + P WGDA+L +C+LI RMPSS L N+IP+S
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHS 182
Query: 374 LLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHR 433
L+FP DPL+ V +VFG TCF HDLSP DKLSAR+VKCVFLGYS+ QKGY+CYSP+ R
Sbjct: 183 LVFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRR 362
Query: 434 FYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIP 476
+Y+S DVTFFED PFF SP+ S+ + V+PIP
Sbjct: 363 YYMSADVTFFEDTPFF-SPSVDHSS---------SLQEVLPIP 461
>BI427153
Length = 422
Score = 202 bits (514), Expect = 7e-52
Identities = 89/138 (64%), Positives = 113/138 (81%)
Frame = +1
Query: 308 HQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLG 367
HQS+CPHTPQQNG+AERK+ HL++T R+L++N++ P WGDA+L AC+LI RMPSS L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 368 NEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCY 427
N+IP+S++FP D L+ V +VFG TCF HDLSP DKLSAR+VKCVFLGYS+ QKGY CY
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCY 360
Query: 428 SPSAHRFYVSKDVTFFED 445
P+ R+Y+S +VTFFED
Sbjct: 361 FPNMRRYYMSANVTFFED 414
>CO981879
Length = 576
Score = 96.7 bits (239), Expect(2) = 2e-40
Identities = 48/92 (52%), Positives = 59/92 (63%)
Frame = -1
Query: 266 FQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERK 325
F+TF I+TQF I++ RSDN + YF+ + +GIIHQSSC TPQQNGVAERK
Sbjct: 567 FKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAERK 388
Query: 326 HRHLVDTTRTLLINAHAPFRFWGDAILIACYL 357
+RHL + R LL AP WG+AIL YL
Sbjct: 387 NRHLXEVARALLFQNKAPKYXWGEAILTGTYL 292
Score = 89.4 bits (220), Expect(2) = 2e-40
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = -2
Query: 360 RMPSSVLGNEIP---YSLLFPKDPLY-VVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFL 415
RMPS +L P ++ FP + L +PL++FG T F H P++ KL RA KCVF+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 416 GYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFF 449
GY+ QKGY+C+ P++ + +V+ DVTFFE PFF
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFEKTPFF 3
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 162 bits (411), Expect = 6e-40
Identities = 118/418 (28%), Positives = 193/418 (45%), Gaps = 15/418 (3%)
Frame = +1
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLT-QSLNCSITFSSDSF 126
+T +G K ++TG+G+ SLN VL + G NLISIS+L + N + T S+
Sbjct: 1771 VTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFT-KSECL 1947
Query: 127 LIQDRSTGKTIGT*FES*GLYYL----HSHPSTICGVSASPD--IIHCRLGHPSLDKLKV 180
+ ++S G+ S YL + S+ C S + I H R GH L +K
Sbjct: 1948 VTNEKSEVLMKGS--RSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKK 2121
Query: 181 LV--------PHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVS 232
++ P+L + C CQ+GK V++S ++ + ++H D+ GP +V
Sbjct: 2122 IIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVE 2301
Query: 233 STLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*Y 292
S G +Y +DDFSR TW+ ++++S F F+ ++ + I+ +RSD+ + +
Sbjct: 2302 SLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREF 2481
Query: 293 FSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAIL 352
++ F F S GI H+ S TPQQNG+ ERK+R L + R +L P+ W +A+
Sbjct: 2482 ENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMN 2661
Query: 353 IACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKC 412
ACY+ R+ Y + + P V +FGS C+ R K+ ++
Sbjct: 2662 TACYIHNRVTLRRGTPTTLYEIWKGRKPT-VKHFHIFGSPCYILADREQRRKMDPKSDAG 2838
Query: 413 VFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTS 470
+FLGYS + YR ++ S +V + P TS + D S
Sbjct: 2839 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKS 3012
Score = 43.5 bits (101), Expect = 5e-04
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = +2
Query: 939 LFSLIEATQISLGIQMPIGQEMQVIDGLLLVIAFLWAEI*FHGRAKSRLLSPDRVQKPSI 998
L ++I Q LGI M IG E+Q+ + LLV +W I FHG A+SR + P + K SI
Sbjct: 4232 LCTVIVQIQCWLGIVMLIGLEVQMTEKALLVDVSIWEPILFHGSARSRTVCPYLLLKQSI 4411
>TC233822
Length = 632
Score = 161 bits (408), Expect = 1e-39
Identities = 89/173 (51%), Positives = 115/173 (66%)
Frame = +2
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
IT ANG K G G+ S PSL+L+ + F+ PFNL+S+S+LT++LN SITF +DSF+
Sbjct: 122 ITLANGTKVTSKGFGKFSIFPSLNLDPIHFVPNCPFNLVSLSQLTKALNFSITFDADSFV 301
Query: 128 IQDRSTGKTIGT*FES*GLYYLHSHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSH 187
IQ+R T IG ES GLYYL S C + SP ++H LGHP L KLK +VP L+
Sbjct: 302 IQERDTSWLIGVEHESRGLYYLEISSSMSCFATPSPKLLHNHLGHPHLLKLK-MVPSLNK 478
Query: 188 LKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYY 240
L+ L+CESCQLGKHVR FP R R S F+ I SD+W PS V+S G++Y+
Sbjct: 479 LQVLECESCQLGKHVRF-FPKRTETRCSSVFSTIPSDIWDPSCVTS-FGFRYF 631
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 159 bits (402), Expect = 6e-39
Identities = 117/418 (27%), Positives = 192/418 (44%), Gaps = 15/418 (3%)
Frame = +1
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLT-QSLNCSITFSSDSF 126
+T +G K ++ G+G+ SLN VL + G NLISIS+L + N + T S+
Sbjct: 1768 VTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFT-KSECL 1944
Query: 127 LIQDRSTGKTIGT*FES*GLYYLHSHPSTICG---VSASPD---IIHCRLGHPSLDKLKV 180
+ ++S G+ S YL + T +S+ D I H R GH L +K
Sbjct: 1945 VTNEKSEVLMKGS--RSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKK 2118
Query: 181 LV--------PHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVS 232
++ P+L + C CQ+GK V++S ++ + ++H D+ GP +V
Sbjct: 2119 IIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVE 2298
Query: 233 STLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*Y 292
S G +Y +DDFSR TW+ ++++S F F+ ++ + I+ +RSD+ + +
Sbjct: 2299 SLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREF 2478
Query: 293 FSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAIL 352
++ F F S GI H+ S TPQQNG+ ERK+R L + R +L P+ W +A+
Sbjct: 2479 ENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMN 2658
Query: 353 IACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKC 412
ACY+ R+ Y + + P V +FGS C+ R K+ ++
Sbjct: 2659 TACYIHNRVTLRRGTPTTLYEIWKGRKP-SVKHFHIFGSPCYILADREQRRKMDPKSDAG 2835
Query: 413 VFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTS 470
+FLGYS + YR ++ S +V + P TS + D S
Sbjct: 2836 IFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKS 3009
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/60 (46%), Positives = 36/60 (59%)
Frame = +2
Query: 939 LFSLIEATQISLGIQMPIGQEMQVIDGLLLVIAFLWAEI*FHGRAKSRLLSPDRVQKPSI 998
L ++I Q LGI M IG E+Q+ + LLV A +W FHG A+SR + P QKPSI
Sbjct: 4229 LCTVIVQIQCWLGIVMLIGLEVQMTEKALLVDASIWETTLFHGSARSRTVCPYLQQKPSI 4408
>CO981347
Length = 624
Score = 80.1 bits (196), Expect(3) = 2e-27
Identities = 40/99 (40%), Positives = 55/99 (55%)
Frame = +2
Query: 273 IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDT 332
I Q G +++LR+DN + FN F GI PHTP QNG+AER + +++
Sbjct: 137 IGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLAERMNMTILER 316
Query: 333 TRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIP 371
R +L++A P FWG+A YLI R PSS LG + P
Sbjct: 317 VRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTP 433
Score = 42.4 bits (98), Expect(3) = 2e-27
Identities = 22/42 (52%), Positives = 27/42 (63%)
Frame = +3
Query: 386 LRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCY 427
L+VFGS F H + KL ARAVKCVF+GY K K Y+ +
Sbjct: 474 LKVFGSLAFDH---VKQGKLDARAVKCVFIGYPKGVKRYKLW 590
Score = 39.7 bits (91), Expect(3) = 2e-27
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 228 PSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS 260
PSRV + G Y++T IDDFSR W+ +LK++S
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKS 101
>TC207859
Length = 751
Score = 108 bits (270), Expect = 1e-23
Identities = 54/102 (52%), Positives = 68/102 (65%), Gaps = 1/102 (0%)
Frame = +1
Query: 153 PSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSHLKSLDCESCQLGKHVRVSFPSRANK 212
P C + SP++ H L HPSL+KL +LVP +S +KSL CES LGKHV + NK
Sbjct: 439 PLVACVSTISPELAH*HLHHPSLNKLHLLVPSVSIIKSLQCESYLLGKHVCHTCSPHVNK 618
Query: 213 RSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDD-FSRCTWI 253
SPF ++HSD+WG S V TLGY Y+VTFIDD F +CTW+
Sbjct: 619 HVASPFALVHSDIWGLSCVYLTLGYFYFVTFIDDFFLKCTWV 744
>CO986013
Length = 803
Score = 70.5 bits (171), Expect(2) = 6e-22
Identities = 34/67 (50%), Positives = 46/67 (67%)
Frame = -2
Query: 356 YLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFL 415
+LI RM SS + N +P+ +LF + L +P RVFGS C H L+ DKL ARA+KC+FL
Sbjct: 562 HLINRMASSSIDNNVPHYVLFLDELLSHIPPRVFGSICCVHYLTRGLDKLIARAIKCIFL 383
Query: 416 GYSKTQK 422
GYS+ +K
Sbjct: 382 GYSRNKK 362
Score = 53.1 bits (126), Expect(2) = 6e-22
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -1
Query: 421 QKGYRCYSPSAHRFYVSKDVTFFEDRPF 448
QKGY CYSP+ HRFY+S DVTFFED PF
Sbjct: 368 QKGYWCYSPANHRFYMSADVTFFEDTPF 285
>TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (23%)
Length = 678
Score = 91.7 bits (226), Expect(2) = 6e-22
Identities = 72/195 (36%), Positives = 93/195 (46%), Gaps = 6/195 (3%)
Frame = -2
Query: 86 PLPSLSLNYVLFISGSPFNLISISKLTQ-SLNCSITFSSDSFLIQDR-----STGKTIGT 139
P PS S++ V + NL+S S+L S C + FL S G
Sbjct: 635 PFPSFSIDNVFHVLKFSINLLSSSRLCSFS*LCGLIH*IFCFLAGLEFGPYVSHGDLTTF 456
Query: 140 *FES*GLYYLHSHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSHLKSLDCESCQLG 199
*F G + +SHP I G K K +V LS L +L CESCQ G
Sbjct: 455 *F---GCIFSYSHPL*I--------------GSS*SCKQKQMVSSLSKLPTLSCESCQFG 327
Query: 200 KHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDR 259
KHV+ SFP R PF ++HSDVWG TL +Y+VTFI+D+S TW+ L+ +R
Sbjct: 326 KHVQSSFPYCVICRDRFPFVLVHSDVWGLCHGMPTLESRYFVTFIEDYS*QTWLFLMVNR 147
Query: 260 S*LFGAFQTFCS*IK 274
S LF F +F IK
Sbjct: 146 SELF*IFTSFYQEIK 102
Score = 32.0 bits (71), Expect(2) = 6e-22
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = -1
Query: 274 KTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
K QFG I L+SD Y S F SFMAS+
Sbjct: 105 KKQFGVLIHTLQSDTTHEYLSQQFQSFMASN 13
>BE057175
Length = 402
Score = 101 bits (251), Expect = 2e-21
Identities = 53/100 (53%), Positives = 64/100 (64%)
Frame = +2
Query: 89 SLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYY 148
SL + F+ PFNL+S+S+ T+SLNC +TF DSF+IQ TG IG ES GLYY
Sbjct: 101 SLFFFFFFFVPNCPFNLVSLSQQTKSLNCPVTFDVDSFVIQKCGTG*LIGVGHESSGLYY 280
Query: 149 LHSHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSHL 188
L P C S SP +IH RLGHP L KLK +VP+LS L
Sbjct: 281 LVPSPFVSCFASPSPKLIHDRLGHPHLSKLKKMVPNLSKL 400
>TC223332
Length = 427
Score = 100 bits (248), Expect = 5e-21
Identities = 64/167 (38%), Positives = 86/167 (51%)
Frame = +2
Query: 396 HDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTS 455
HDL+P DKL ARA+KC+FL YS TQKGY CYS + HRFY+S DVTFFED PFF S +S
Sbjct: 5 HDLTPGLDKLKARAIKCIFLDYSCTQKGYWCYSLANHRFYMSVDVTFFEDTPFFNSSISS 184
Query: 456 GSTTSTTSTTDVTTSHVMPIPLFEPFVSTQNPPQSQGNPEFRQYGITYELRHVEAPETAP 515
S S ++PIP P + +PP + P F L + P P
Sbjct: 185 KS-----------VSQLLPIPSVIPHRTVSSPPSA---PLF--------LIYHRCPRPQP 298
Query: 516 IDSNDSTPKTPATNSSDSGIVPVSSPAAVPPERPIDLPIAFRKDKKV 562
++ P T T + S + P+ P AV + I + ++K +
Sbjct: 299 VE----PPLTEETGT--SSLAPIIHPVAVDSDLSITIHKVL*RNKAI 421
>AI442763
Length = 426
Score = 93.2 bits (230), Expect = 6e-19
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = -2
Query: 129 QDRSTGKTIGT*FES*GLYYLHSHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHLSHL 188
+DR G IG +S GLY L + + +S P++ H L HPS +K +LVP +S +
Sbjct: 410 KDRRLG*MIGAGHKSRGLY*LSPLVAWVSPIS--PELAH*HLPHPSFNKXPLLVPSVSII 237
Query: 189 KSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDD-F 247
KS CES LGKHV + NK SPF ++ S++WG S V TLGY Y+V IDD F
Sbjct: 236 KSPQCESDLLGKHVCQTCSPHVNKHVGSPFALVPSEIWGFSWVYLTLGYFYFVPLIDDFF 57
Query: 248 SRCTWITLLK 257
+ TW+ L+K
Sbjct: 56 LKRTWVFLMK 27
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 93.2 bits (230), Expect = 6e-19
Identities = 51/145 (35%), Positives = 80/145 (55%)
Frame = +1
Query: 193 CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTW 252
C++C++GK R SFP+ + R I+H D+ + + Y++TFIDDFS+ W
Sbjct: 331 CDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKKMW 507
Query: 253 ITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSC 312
+ LK +S AF+ F + + Q G ++ L D + Y S + F HGI HQ +
Sbjct: 508 VYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLS--YTIFFEKHGIQHQLTT 681
Query: 313 PHTPQQNGVAERKHRHLVDTTRTLL 337
+TPQ NGV ERK++ ++D R +L
Sbjct: 682 KYTPQHNGVTERKNKTIMDMVRCML 756
>AI901012
Length = 410
Score = 56.6 bits (135), Expect(2) = 8e-19
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 296 SFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLV 330
SF +FM SHG+IHQSSCPHT QQNGVA K +H++
Sbjct: 305 SFFTFMTSHGMIHQSSCPHTLQQNGVANHKLQHII 409
Score = 56.6 bits (135), Expect(2) = 8e-19
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 215 MSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDR 259
+S NI+HS++WG S + S LG++YYVTFIDDFSR T TLL +R
Sbjct: 64 VSSANIVHSNIWGHSCILSILGFRYYVTFIDDFSRHT-XTLLNER 195
>CO982898
Length = 816
Score = 57.4 bits (137), Expect(2) = 2e-16
Identities = 29/66 (43%), Positives = 39/66 (58%)
Frame = -3
Query: 300 FMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLIT 359
F+ GIIH+ PHT QN V ERK RH+V +LL +A P +FWG A + +LI
Sbjct: 781 FLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWGHAFITPVFLIN 605
Query: 360 RMPSSV 365
R+P +
Sbjct: 604 RLPHCI 587
Score = 47.4 bits (111), Expect(2) = 2e-16
Identities = 29/83 (34%), Positives = 44/83 (52%)
Frame = -1
Query: 362 PSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQ 421
P+ + +PY+ LF + Y P RVFG CF + K + ++ +C+FLG +
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFP-RVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSH 421
Query: 422 KGYRCYSPSAHRFYVSKDVTFFE 444
K Y+C +P+ VSKDV F E
Sbjct: 420 KNYKCLAPAGK--LVSKDVIFNE 358
>BI784757
Length = 430
Score = 84.0 bits (206), Expect = 3e-16
Identities = 42/121 (34%), Positives = 65/121 (53%)
Frame = +1
Query: 193 CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTW 252
C+ C K R +F R+ +I+SDV GP + S G +Y+++FID+ +R W
Sbjct: 67 CDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRKVW 246
Query: 253 ITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSC 312
+ L++ +S F F+ F + K Q G I+ILR++ Y ST F F GIIH+ +
Sbjct: 247 VYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCDQQGIIHEVTP 426
Query: 313 P 313
P
Sbjct: 427 P 429
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 78.2 bits (191), Expect = 2e-14
Identities = 41/113 (36%), Positives = 59/113 (51%)
Frame = -2
Query: 343 PFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDR 402
P FW A+L A YLI +P+ L N PY L P + LR+FG C+A + +R
Sbjct: 908 PPNFWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIP-DISHLRIFGCLCYASTIKANR 732
Query: 403 DKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTS 455
KL RA C+F+G+ KGY Y +H S++V F+E+ + T+S
Sbjct: 731 KKLEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVFYENHDAMSFNTSS 573
>BI701169
Length = 407
Score = 70.1 bits (170), Expect(2) = 2e-13
Identities = 36/98 (36%), Positives = 56/98 (56%)
Frame = +2
Query: 240 YVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNS 299
+ FIDDFSR TW+ K + +F F+ F + ++ + G I+ +RSD + S F
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 300 FMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLL 337
+ HGI +PQQNGVAERK+R +++ R++L
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
Score = 24.6 bits (52), Expect(2) = 2e-13
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 205 SFPSRANKRSMSPFNIIHSDVWGPSRVSS 233
SFP +N R+ +IH+D GP + SS
Sbjct: 12 SFPKESNLRAKKLLELIHTD-GGPIKTSS 95
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.342 0.151 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,449,567
Number of Sequences: 63676
Number of extensions: 926415
Number of successful extensions: 8385
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 8085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8320
length of query: 1105
length of database: 12,639,632
effective HSP length: 107
effective length of query: 998
effective length of database: 5,826,300
effective search space: 5814647400
effective search space used: 5814647400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC147007.6