BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147001.13 + phase: 0
(136 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214470 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC214464 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC214471 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC214463 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC214467 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC214466 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete 249 2e-67
TC225748 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC225747 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC217752 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC205707 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC218355 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC214482 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC214488 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC214469 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC215233 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
TC225749 homologue to UP|Q8CGN9 (Q8CGN9) Histone protein Hist2h3... 240 1e-64
TC215237 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, c... 240 1e-64
BE190464 PIR|A27501|HS histone H3.3 [validated] - human, complete 239 4e-64
TC225752 UP|H3_PEA (P02300) Histone H3, partial (98%) 233 2e-62
TC214577 similar to UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, ... 215 6e-57
>TC214470 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 708
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 255
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 256 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 435
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 436 MPKDIQLARRIRGERA 483
>TC214464 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 805
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 52 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 231
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 232 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 411
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 412 MPKDIQLARRIRGERA 459
>TC214471 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 993
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 96 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 275
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 276 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 455
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 456 MPKDIQLARRIRGERA 503
>TC214463 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 814
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 101 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 280
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 281 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 460
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 461 MPKDIQLARRIRGERA 508
>TC214467 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 835
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 47 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 226
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 227 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 406
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 407 MPKDIQLARRIRGERA 454
>TC214466 UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 666
Score = 249 bits (637), Expect = 2e-67
Identities = 126/136 (92%), Positives = 131/136 (95%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRPGTVALREIRKYQK TE
Sbjct: 57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 236
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQSHAVLALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 237 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 416
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 417 MPKDIQLARRIRGERA 464
>TC225748 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 914
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 84 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 263
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 264 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 443
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 444 MPKDIQLARRIRGERA 491
>TC225747 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 1486
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 253
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 254 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 433
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 434 MPKDIQLARRIRGERA 481
>TC217752 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 710
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 63 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 242
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 243 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 422
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 423 MPKDIQLARRIRGERA 470
>TC205707 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 708
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 76 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 255
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 256 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 435
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 436 MPKDIQLARRIRGERA 483
>TC218355 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 652
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 77 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 256
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 257 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 436
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 437 MPKDIQLARRIRGERA 484
>TC214482 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 724
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC214488 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 692
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 65 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 244
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 245 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 424
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 425 MPKDIQLARRIRGERA 472
>TC214469 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 642
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 77 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 256
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 257 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 436
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 437 MPKDIQLARRIRGERA 484
>TC215233 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 707
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +3
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 66 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 245
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 246 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 425
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 426 MPKDIQLARRIRGERA 473
>TC225749 homologue to UP|Q8CGN9 (Q8CGN9) Histone protein Hist2h3c1, partial
(77%)
Length = 686
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 71 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 250
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 251 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 430
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 431 MPKDIQLARRIRGERA 478
>TC215237 homologue to UP|Q6LBE8 (Q6LBE8) Histone H3.2 protein, complete
Length = 686
Score = 240 bits (613), Expect = 1e-64
Identities = 122/136 (89%), Positives = 128/136 (93%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TE
Sbjct: 50 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 229
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 230 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 409
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 410 MPKDIQLARRIRGERA 457
>BE190464 PIR|A27501|HS histone H3.3 [validated] - human, complete
Length = 435
Score = 239 bits (609), Expect = 4e-64
Identities = 121/136 (88%), Positives = 129/136 (93%)
Frame = +1
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS P+TGG+KKPHRYRPGTVALREIR+YQK TE
Sbjct: 28 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 207
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKR+T+
Sbjct: 208 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 387
Query: 121 MVKDIQLARRIRGERA 136
M KDIQLARRIRGERA
Sbjct: 388 MPKDIQLARRIRGERA 435
>TC225752 UP|H3_PEA (P02300) Histone H3, partial (98%)
Length = 631
Score = 233 bits (595), Expect = 2e-62
Identities = 118/134 (88%), Positives = 125/134 (93%)
Frame = +1
Query: 3 RTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTELL 62
+ KQTAR+ST GKAPRKQLATKAARKS P TGG+KKPHR+RPGTVALREIRKYQK TELL
Sbjct: 166 KKKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELL 345
Query: 63 IRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITVMV 122
IRKLPFQRLVREIAQ+FKTDLRFQS AV ALQEA EAYLVGLFEDTNLCAIHAKR+T+M
Sbjct: 346 IRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 525
Query: 123 KDIQLARRIRGERA 136
KDIQLARRIRGERA
Sbjct: 526 KDIQLARRIRGERA 567
>TC214577 similar to UP|Q6LB28 (Q6LB28) Histone H3 variant H3.3, complete
Length = 892
Score = 215 bits (547), Expect = 6e-57
Identities = 110/136 (80%), Positives = 121/136 (88%)
Frame = +2
Query: 1 MARTKQTARRSTLGKAPRKQLATKAARKSVPTTGGIKKPHRYRPGTVALREIRKYQKGTE 60
MARTKQTAR+ST GKAPRKQLATKAARKS PTTGG+KKPHRYRP T ALRE R+YQ+ TE
Sbjct: 485 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPETEALRERRRYQRTTE 664
Query: 61 LLIRKLPFQRLVREIAQNFKTDLRFQSHAVLALQEAVEAYLVGLFEDTNLCAIHAKRITV 120
LLIRKLPFQRLVREIA +FKTDLR QS AVLALQEA EAYLVGL +DTNLCA++AKR+T+
Sbjct: 665 LLIRKLPFQRLVREIAHDFKTDLRCQSRAVLALQEAAEAYLVGLCDDTNLCAVNAKRVTI 844
Query: 121 MVKDIQLARRIRGERA 136
M KD +LAR I GERA
Sbjct: 845 MPKDSELAREIPGERA 892
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,884,548
Number of Sequences: 63676
Number of extensions: 36047
Number of successful extensions: 234
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of query: 136
length of database: 12,639,632
effective HSP length: 87
effective length of query: 49
effective length of database: 7,099,820
effective search space: 347891180
effective search space used: 347891180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147001.13