BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.15 - phase: 0 /pseudo
(485 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO981347 43 4e-04
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 40 0.002
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 38 0.012
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 38 0.012
AI959950 36 0.034
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 36 0.044
AI855982 33 0.29
BU084357 32 0.49
BE474445 30 3.2
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 29 4.1
>CO981347
Length = 624
Score = 42.7 bits (99), Expect = 4e-04
Identities = 22/54 (40%), Positives = 31/54 (56%)
Frame = +2
Query: 1 FNQICKDSGIVRHKQIRGTPRENCLDH*RMDRKIMERFICLMSNANNSTLFWDE 54
FN+ C+ GI RHK + TP +N L RM+ I+ER C++ +A FW E
Sbjct: 209 FNEFCRKIGIKRHKIVPHTP*QNGLAE-RMNMTILERVRCMLLSARLPKTFWGE 367
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/70 (35%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = +3
Query: 272 WIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NSRFKARGFT* 329
WI M+EEL+ +N W LV KP+ + +F KL E + +R A+G+
Sbjct: 42 WIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQ 221
Query: 330 REGID*CENY 339
EGID E Y
Sbjct: 222 EEGIDYEETY 251
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 37.7 bits (86), Expect = 0.012
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 272 WIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLK---EGVNYMD*NSRFKARGFT 328
WI +M+EEL +N W LV +P+ + +FK K EGV + +R A+G+T
Sbjct: 3241 WINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRN-KARLVAQGYT 3417
Query: 329 *REGID*CENY 339
EG+D E +
Sbjct: 3418 QIEGVDFDETF 3450
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 37.7 bits (86), Expect = 0.012
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 272 WIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LFKLK---EGVNYMD*NSRFKARGFT 328
WI +M+EEL +N W LV +P+ + +FK K EGV + +R A+G+T
Sbjct: 3238 WINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRN-KARLVAQGYT 3414
Query: 329 *REGID*CENY 339
EG+D E +
Sbjct: 3415 QIEGVDFDETF 3447
>AI959950
Length = 466
Score = 36.2 bits (82), Expect = 0.034
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -1
Query: 275 SMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NSRFKARGFT*REG 332
+M+EEL KN LV PKR K + +F KL E + +R A+G++ +EG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 333 ID*CENYFLV 342
ID + + LV
Sbjct: 211 IDYPKTFALV 182
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 35.8 bits (81), Expect = 0.044
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -3
Query: 275 SMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NSRFKARGFT*REG 332
+M+EEL+ +N W LV KP+ + +F KL E + +R A+G+ EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 333 ID*CENY 339
ID E Y
Sbjct: 278 IDYEETY 258
>AI855982
Length = 484
Score = 33.1 bits (74), Expect = 0.29
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Frame = +2
Query: 272 WIASMKEELSSLHKNGTWLLVNKPKRMKNMSCI*LF--KLKEGVNYMD*NSRFKARGFT* 329
WI +M+EEL+ +N W LV KP + +F KL E + +R A G+
Sbjct: 137 WIIAMQEELNQFERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQ 316
Query: 330 REGID 334
+G+D
Sbjct: 317 VDGLD 331
>BU084357
Length = 431
Score = 32.3 bits (72), Expect = 0.49
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 266 ASKSREWIASMKEELSSLHKNGTWLLV 292
A K EW +M EEL++L NGTW LV
Sbjct: 274 AMKHLEWKKTMLEELNALIANGTWTLV 354
>BE474445
Length = 340
Score = 29.6 bits (65), Expect = 3.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 263 FVNASKSREWIASMKEELSSLHKNGTWLLVNKPKRMKNMSC 303
+ A + + W ++ EL ++ N TW +V P+ K +SC
Sbjct: 205 YSQAIQHKPWQETISAELMAMKLNNTWTIVPLPQGKKPISC 327
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 29.3 bits (64), Expect = 4.1
Identities = 10/34 (29%), Positives = 27/34 (79%)
Frame = -2
Query: 417 MILKIDDMLIACNIKEEFDKVKVML*IEFQMKDM 450
+++ +DD+++A + +EFD++K +L + F++K++
Sbjct: 282 LLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKNL 181
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.361 0.161 0.572
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,804,624
Number of Sequences: 63676
Number of extensions: 246313
Number of successful extensions: 2546
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 1967
length of query: 485
length of database: 12,639,632
effective HSP length: 101
effective length of query: 384
effective length of database: 6,208,356
effective search space: 2384008704
effective search space used: 2384008704
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147000.15