BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.1 - phase: 0
(504 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220926 similar to GB|AAF75234.1|8453100|AF233752 short-root pr... 296 1e-80
TC234771 similar to GB|AAF75234.1|8453100|AF233752 short-root pr... 211 5e-55
TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partia... 170 2e-42
TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberel... 163 1e-40
TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%) 163 2e-40
TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [im... 114 8e-40
TC209743 similar to PIR|E86347|E86347 scarecrow-like 1 protein F... 150 1e-36
BI974214 similar to GP|8453100|gb|A short-root protein {Arabidop... 147 8e-36
TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial... 147 1e-35
TC227564 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 142 5e-34
TC219179 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 142 5e-34
BU926447 similar to GP|8453100|gb|A short-root protein {Arabidop... 140 1e-33
TC220187 similar to PIR|E86347|E86347 scarecrow-like 1 protein F... 124 1e-28
TC226165 GAI1 [Glycine max] 119 4e-27
CO981442 113 2e-25
TC219232 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-... 100 1e-21
TC230486 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional... 97 2e-20
TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-... 95 6e-20
TC210169 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional... 94 1e-19
TC208938 weakly similar to UP|Q7X9T5 (Q7X9T5) SCARECROW-like pro... 93 3e-19
>TC220926 similar to GB|AAF75234.1|8453100|AF233752 short-root protein
{Arabidopsis thaliana;} , partial (33%)
Length = 937
Score = 296 bits (759), Expect = 1e-80
Identities = 146/205 (71%), Positives = 166/205 (80%), Gaps = 3/205 (1%)
Frame = +1
Query: 303 MGVPFKFKII--FSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGL 360
MGVPFKF +I + DL E N +LDIKEDEALA+NCVN LHS+S GN+RD IS L+ L
Sbjct: 1 MGVPFKFNVIHHYGDLSEFNFNELDIKEDEALAVNCVNRLHSVSALGNNRDALISALQAL 180
Query: 361 EPRVLTIVEEEADLEVCF-GSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAG 419
+PR++T+VEEEADL+V G +FV+GF+E LRWFRVYFEALDESF +TS+ERLMLER AG
Sbjct: 181 QPRIVTVVEEEADLDVGIDGYEFVKGFEESLRWFRVYFEALDESFVKTSNERLMLERAAG 360
Query: 420 RGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMT 479
R +VDLVAC P +SVERRETAARW RLH GG N FSDEVCDDVRALLRRYKEGWSM
Sbjct: 361 RAVVDLVACSPADSVERRETAARWAARLHNGGLNAAPFSDEVCDDVRALLRRYKEGWSMA 540
Query: 480 SSDGDTGIFLSWKDKPVVWASVWRP 504
+ D GIFLSWKD PVVWAS WRP
Sbjct: 541 AC-SDAGIFLSWKDTPVVWASAWRP 612
>TC234771 similar to GB|AAF75234.1|8453100|AF233752 short-root protein
{Arabidopsis thaliana;} , partial (20%)
Length = 753
Score = 211 bits (538), Expect = 5e-55
Identities = 104/177 (58%), Positives = 133/177 (74%)
Frame = +1
Query: 100 NTINTPTTTDNYSFSPSHDYFNFEFSGHSWSQNILLETARAFSDNNTNRIQQLMWMLNEL 159
N +T T+ + S PS D W+ +L E A+A S+ ++++ +WMLNEL
Sbjct: 244 NHSHTSTSRSSDSSEPSED--------GKWAPKLLRECAKAISERDSSKTHHHLWMLNEL 399
Query: 160 STPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQEVSPW 219
++PYGD DQKL+SYFLQALF R ++G+R YKTL++ +EK SFDS +++LKFQEVSPW
Sbjct: 400 ASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSAMRLILKFQEVSPW 579
Query: 220 TTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTV 276
TTFGHVA+NGAILEALEG PKLHIID+SNT CTQ TLLEALATR+D+TPHL+LT V
Sbjct: 580 TTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQXXTLLEALATRNDETPHLKLTVV 750
>TC228546 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (60%)
Length = 1493
Score = 170 bits (430), Expect = 2e-42
Identities = 110/345 (31%), Positives = 175/345 (49%), Gaps = 5/345 (1%)
Frame = +3
Query: 164 GDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFG 223
GD Q+L +Y L+ L +R+ +G YK L E+ S D M + +Q + P+ F
Sbjct: 54 GDPIQRLGAYMLEGLRARLESSGSIIYKALKC--EQPTSNDLMTYMHILYQ-ICPYWKFA 224
Query: 224 HVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGG 283
+ +AN I EA+ ++ IID TQW L++ALA+R P + +T V + S
Sbjct: 225 YTSANAVIGEAMLNESRIRIIDFQIAQGTQWLLLIQALASRPGGPPFVHVTGVDDSQSFH 404
Query: 284 SVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSI 343
+ + +G R+ +A+ GVPF+F EL L +L I+ EAL +N LH +
Sbjct: 405 ARGGGLHIVGKRLSDYAKSCGVPFEFHSAAMCGSELELENLVIQPGEALVVNFPFVLHHM 584
Query: 344 SGAG----NHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEA 399
NHRD + L++ L P+V+T+VE+E++ S F + F E L ++ FE+
Sbjct: 585 PDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNT---SPFFQRFVETLSYYTAMFES 755
Query: 400 LDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFS 458
+D + R +R+ E+ R IV++VAC+ E +ER E +WR R GF S
Sbjct: 756 IDVALPRDDKQRINAEQHCVARDIVNMVACEGDERLERHELLGKWRSRFSMAGFAPCPLS 935
Query: 459 DEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
V VR +L + E + + DG ++L WK + + +S WR
Sbjct: 936 SSVTAAVRNMLNEFNENYRLQHRDG--ALYLGWKSRAMCTSSAWR 1064
>TC228139 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein, partial (47%)
Length = 1497
Score = 163 bits (413), Expect = 1e-40
Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 5/286 (1%)
Frame = +1
Query: 222 FGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAIS 281
FG++AANGAI +A +HIID TQW TLL+ALA R PH+R+T + +S
Sbjct: 13 FGYMAANGAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVS 192
Query: 282 GGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLH 341
+ ++ +G R+ + G+P +F + + LDI+ EALA+N LH
Sbjct: 193 KYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPNVTREMLDIRPGEALAVNFPLQLH 372
Query: 342 SISG----AGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYF 397
+ N RD + L+R L P+V T+VE+E++ + F F E L ++ F
Sbjct: 373 HTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNT---TPFFNRFIETLDYYLAIF 543
Query: 398 EALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVS 456
E++D + R S ER+ +E+ R IV+++AC+ E VER E +W+ RL GF
Sbjct: 544 ESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLKMAGFQQCP 723
Query: 457 FSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVW 502
S V +R+LL Y E +++ DG + L WKD+ ++ AS W
Sbjct: 724 LSSYVNSVIRSLLMCYSEHYTLVEKDG--AMLLGWKDRNLISASAW 855
>TC226166 similar to UP|O23724 (O23724) GAI protein, partial (70%)
Length = 1613
Score = 163 bits (412), Expect = 2e-40
Identities = 104/371 (28%), Positives = 183/371 (49%), Gaps = 1/371 (0%)
Frame = +1
Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
L+ A A +NN + L+ + L+ +K++ YF +AL R+ R +
Sbjct: 124 LMACAEAVENNNLAVAEALVKQIGFLAVSQVGAMRKVAIYFAEALARRIY----RVFPLQ 291
Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
+ S+ + + F E P+ F H AN ILEA +G ++H+ID Q
Sbjct: 292 HSLSDS---------LQIHFYETCPYLKFAHFTANQVILEAFQGKNRVHVIDFGINQGMQ 444
Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-II 312
WP L++ALA R+ P RLT + + S ++E+G ++ + A + V F+++ +
Sbjct: 445 WPALMQALAVRTGGPPVFRLTGIGPPAADNSDH--LQEVGWKLAQLAEEINVQFEYRGFV 618
Query: 313 FSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEA 372
+ L +L+ LD++EDE++A+N V H + + +S++R + P +LT+VE+EA
Sbjct: 619 ANSLADLDASMLDLREDESVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEA 798
Query: 373 DLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYE 432
+ G FV+ F E L ++ F++L+ S +++ M E G+ I ++VAC+ +
Sbjct: 799 NHN---GLSFVDRFTESLHYYSTLFDSLEGS-PVNPNDKAMSEVYLGKQICNVVACEGMD 966
Query: 433 SVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWK 492
VER ET +WR R GF+ V LL + G + + + L W
Sbjct: 967 RVERHETLNQWRNRFGSTGFSPVHLGSNAYKQASMLLSLFGGGDGYRVEENNGCLMLGWH 1146
Query: 493 DKPVVWASVWR 503
+P++ SVW+
Sbjct: 1147TRPLIATSVWQ 1179
>TC227563 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(71%)
Length = 1274
Score = 114 bits (284), Expect(2) = 8e-40
Identities = 67/240 (27%), Positives = 124/240 (50%), Gaps = 5/240 (2%)
Frame = +2
Query: 269 PHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKE 328
P +R+T + S + + ++ +G+R+ + A+ VPF+F I + E+ L DL ++
Sbjct: 452 PKIRITGFDDSTSAYAREGGLEIVGARLSRLAQSYNVPFEFHAIRAAPTEVELKDLALQP 631
Query: 329 DEALAINCVNSLHSISG----AGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVE 384
EA+A+N LH + + NHRD + L + L P+++T+VE+E+ F
Sbjct: 632 GEAIAVNFAMMLHHVPDECVDSRNHRDRLVRLAKCLSPKIVTLVEQESHTN---NLPFFP 802
Query: 385 GFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARW 443
F E + ++ FE++D + R ER+ +E+ R +V+L+AC+ E VER E +W
Sbjct: 803 RFVETMNYYLAIFESIDVALPREHKERINVEQHCLAREVVNLIACEGAERVERHELLKKW 982
Query: 444 RRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
R R GF + V ++ L + Y+ +++ DG + L W ++ ++ + WR
Sbjct: 983 RSRFTMAGFTPYPLNSFVTCSIKNLQQSYQGHYTLEERDG--ALCLGWMNQVLITSCAWR 1156
Score = 68.6 bits (166), Expect(2) = 8e-40
Identities = 43/139 (30%), Positives = 74/139 (52%)
Frame = +3
Query: 131 QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTY 190
+ +L A+A + N+ + LM L ++ + G+ Q+L +Y L+AL +R+ +G Y
Sbjct: 45 KEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIY 224
Query: 191 KTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTY 250
K L E T S + LL E+ P+ FG+++ANGAI E ++ ++HIID
Sbjct: 225 KVLK-CKEPTGSELLSHMHLL--YEICPYLKFGYMSANGAIAEVMKEESEVHIIDFQINQ 395
Query: 251 CTQWPTLLEALATRSDDTP 269
QW +L+ + ++ TP
Sbjct: 396 GIQWVSLIPSCCWQTWSTP 452
>TC209743 similar to PIR|E86347|E86347 scarecrow-like 1 protein F24J8.8 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(47%)
Length = 1078
Score = 150 bits (380), Expect = 1e-36
Identities = 92/287 (32%), Positives = 150/287 (52%), Gaps = 6/287 (2%)
Frame = +1
Query: 223 GHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISG 282
G V ANGAI E + K+HIID + TQ+ TL++ LA+ PH+RLT V S
Sbjct: 1 GRVGANGAIAEVVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPHVRLTAVDDPESV 180
Query: 283 GSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHS 342
+ IG R+EK A + +PF+F+ + S + L+ + EAL +N LH
Sbjct: 181 QRSIGGINIIGQRLEKLAEELRLPFEFRAVASRTSNVTQSMLNCRPGEALVVNFAFQLHH 360
Query: 343 IS----GAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFE 398
+ N RD + +++ L P+++T+VE++ + S F+ F E ++ F
Sbjct: 361 MRDETVSTVNERDQLLRMVKSLNPKIVTVVEQDMNTNT---SPFLPRFIETYNYYSAVFN 531
Query: 399 ALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSF 457
LD + R S +R+ +ER+ + IV++VAC+ E +ER E A +WR RL GF
Sbjct: 532 TLDATLPRESQDRMNVERQCLAKDIVNIVACEGEERIERYEVAGKWRARLSMAGFTPSPM 711
Query: 458 SDEVCDDVRAL-LRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
S V + +R L +++Y + + + G G+ W+DK ++ AS W+
Sbjct: 712 STNVREAIRNLIIKQYCDKFKIKEEMG--GLHFGWEDKNLIVASAWK 846
>BI974214 similar to GP|8453100|gb|A short-root protein {Arabidopsis
thaliana}, partial (13%)
Length = 422
Score = 147 bits (372), Expect = 8e-36
Identities = 92/164 (56%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Frame = +1
Query: 17 YQPDPSLNSTTTLTTSSSSRSSRQTTYHYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSS 76
+Q D S TTSSSSRSSRQ + Y QE DEECFN ++MD DEDLSSSS
Sbjct: 4 HQADQDHQSLNNSTTSSSSRSSRQEQNYPY-PQEHDEECFN--FFMD-----DEDLSSSS 159
Query: 77 SKQHYYTYPYASTTTITTPNTTYNTINTPTTTDNYSFSPSHDY---FNFEFSGHSWSQNI 133
SK HYY Y + P+TTD +SFSP+ F FEFS W+Q+I
Sbjct: 160 SK-HYYPYQP----------------HPPSTTD-HSFSPTPGVDVVFPFEFSSGKWAQDI 285
Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQA 177
LLETARA +D NT R+QQLMWMLNELS+PYGDTDQKL+SYFLQA
Sbjct: 286 LLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQA 417
>TC204219 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (50%)
Length = 1208
Score = 147 bits (370), Expect = 1e-35
Identities = 91/299 (30%), Positives = 153/299 (50%), Gaps = 6/299 (2%)
Frame = +1
Query: 211 LKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPH 270
+ F E P+ F H AN AILEA K+H+ID QWP L++ALA R P
Sbjct: 10 MHFYESCPYLKFAHFTANQAILEAFATAGKVHVIDFGLKQGMQWPALMQALALRPGGPPT 189
Query: 271 LRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-IIFSDLRELNLCDLDIKED 329
RLT + + ++++G ++ + A+ +GV F+F+ + + L +L+ L+I+
Sbjct: 190 FRLTGIGPPQPDNT--DALQQVGWKLAQLAQNIGVQFEFRGFVCNSLADLDPKMLEIRPG 363
Query: 330 EALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKEC 389
EA+A+N V LH + D + ++ ++P+++TIVE+EA+ G F++ F E
Sbjct: 364 EAVAVNSVFELHRMLARPGSVDKVLDTVKKIKPKIVTIVEQEANHN---GPGFLDRFTEA 534
Query: 390 LRWFRVYFEALDESFSRT-----SSERLMLEREAGRGIVDLVACDPYESVERRETAARWR 444
L ++ F++L+ S S T + + LM E GR I ++VA + + VER ET ++WR
Sbjct: 535 LHYYSSLFDSLEGSSSSTGLGSPNQDLLMSELYLGRQICNVVANEGADRVERHETLSQWR 714
Query: 445 RRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
RL GF+ V LL + G + + + L W +P++ S W+
Sbjct: 715 GRLDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWK 891
>TC227564 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(53%)
Length = 1107
Score = 142 bits (357), Expect = 5e-34
Identities = 82/269 (30%), Positives = 143/269 (52%), Gaps = 5/269 (1%)
Frame = +3
Query: 240 KLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKF 299
++HI+D TQW +L++ALA R P +R++ V + S + + + +G R+
Sbjct: 3 EVHIVDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSYSAYARRGGLDIVGKRLSAL 182
Query: 300 ARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSIS----GAGNHRDLFIS 355
A+ VPF+F + + E+ L DL+++ EA+A+N SLH + + NHRD +
Sbjct: 183 AQSCHVPFEFNAVRVPVTEVQLEDLELRPYEAVAVNFAISLHHVPDESVNSHNHRDRLLR 362
Query: 356 LLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLE 415
L + L P+V+T+VE+E + F++ F E + ++ FE++D R ER+ +E
Sbjct: 363 LAKQLSPKVVTLVEQEFSTN---NAPFLQRFVETMNYYLAVFESIDTVLPREHKERINVE 533
Query: 416 REA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKE 474
+ R +V+L+AC+ E VER E +WR R GF S + ++ LL+ Y
Sbjct: 534 QHCLAREVVNLIACEGEERVERHELLNKWRMRFTKAGFTPYPLSSVINSSIKDLLQSYHG 713
Query: 475 GWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
+++ DG +FL W ++ +V + WR
Sbjct: 714 HYTLEERDG--ALFLGWMNQVLVASCAWR 794
>TC219179 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(52%)
Length = 1025
Score = 142 bits (357), Expect = 5e-34
Identities = 82/269 (30%), Positives = 138/269 (50%), Gaps = 5/269 (1%)
Frame = +3
Query: 240 KLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKF 299
++HIID +QW TL++A A R PH+R+T + + S + + +G R+ K
Sbjct: 12 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGRRLSKL 191
Query: 300 ARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSIS----GAGNHRDLFIS 355
A VPF+F ++ L +L ++ EALA+N LH + NHRD +
Sbjct: 192 AEHFKVPFEFHAAAISGFDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLR 371
Query: 356 LLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLE 415
L+R L P+V+T+VE+E++ + F F E L ++ FE++D + R ER+ +E
Sbjct: 372 LVRSLSPKVVTLVEQESNTNT---AAFFPRFLETLNYYTAMFESIDVTLPREHKERINVE 542
Query: 416 REA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKE 474
+ R +V+++AC+ E VER E +WR R GF S V ++ LL Y +
Sbjct: 543 QHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSD 722
Query: 475 GWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
+ + DG ++L W ++ +V + W+
Sbjct: 723 RYRLEERDG--ALYLGWMNRDLVASCAWK 803
>BU926447 similar to GP|8453100|gb|A short-root protein {Arabidopsis
thaliana}, partial (7%)
Length = 450
Score = 140 bits (353), Expect = 1e-33
Identities = 90/162 (55%), Positives = 108/162 (66%), Gaps = 6/162 (3%)
Frame = +2
Query: 2 DTLFRLVNFQQQQQQYQPDPSLNSTTTLTTSSSSRSSRQTTYHYYNQQEEDEECFNNFYY 61
DTLFRLV+F QQQQ PDPSLNSTT+ TSSSSRSSRQ Y Y + QEE EECFN +Y
Sbjct: 2 DTLFRLVSFHQQQQ---PDPSLNSTTS-RTSSSSRSSRQNYYPYSSYQEE-EECFN--FY 160
Query: 62 MDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTYNTINTPTTTDN----YSFSPSH 117
MD +EDLSSSSSK +Y P+ N + + NT +TT N YSFSP+
Sbjct: 161 MD-----EEDLSSSSSKYYYPYQPHHQQQQQQQHNVSNISTNTFSTTPNTDYSYSFSPTP 325
Query: 118 DY--FNFEFSGHSWSQNILLETARAFSDNNTNRIQQLMWMLN 157
FNFEFS + WS N+LLE+ARA +DNN+ R+ L+WMLN
Sbjct: 326 QVQDFNFEFSPN-WSHNLLLESARAVADNNSTRLHHLLWMLN 448
>TC220187 similar to PIR|E86347|E86347 scarecrow-like 1 protein F24J8.8 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(39%)
Length = 810
Score = 124 bits (310), Expect = 1e-28
Identities = 71/222 (31%), Positives = 123/222 (54%), Gaps = 7/222 (3%)
Frame = +3
Query: 289 MKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLH-----SI 343
++ IG R+EK A +G+PF+F+ + S + L+ DEAL +N LH S+
Sbjct: 45 LQNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCSPDEALVVNFAFQLHHMPDESV 224
Query: 344 SGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDES 403
S A N RD + L++ L P+++T+VE++ + + F+ F E ++ FE+LD +
Sbjct: 225 STA-NERDQLLRLVKSLNPKLVTVVEQDVNTNT---TPFLPRFVEAYNYYSAVFESLDAT 392
Query: 404 FSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVC 462
R S +R+ +ER+ R IV++VAC+ + +ER E A +WR R+ GF + S V
Sbjct: 393 LPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVT 572
Query: 463 DDVRALLRR-YKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
D++R L++ Y + + + G + W+DK ++ AS W+
Sbjct: 573 DEIRKLIKTVYCDRYKIKEEMG--ALHFGWEDKNLIVASAWK 692
>TC226165 GAI1 [Glycine max]
Length = 1313
Score = 119 bits (297), Expect = 4e-27
Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 1/261 (0%)
Frame = +3
Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
L+ A A +NN + L+ + L+ +K+++YF +AL R+ R +
Sbjct: 579 LMACAEAVENNNLAVAEALVKQIGFLALSQVGAMRKVATYFAEALARRIY----RVFPQQ 746
Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
+ S+ + + F E P+ F H AN AILEA +G ++H+ID Q
Sbjct: 747 HSLSDS---------LQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFGINQGMQ 899
Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-II 312
WP L++ALA R+D P RLT + + S ++E+G ++ + A + V F+++ +
Sbjct: 900 WPALMQALALRNDGPPVFRLTGIGPPAADNSDH--LQEVGWKLAQLAERIHVQFEYRGFV 1073
Query: 313 FSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEA 372
+ L +L+ LD++EDE++A+N V H + + +S++R + P +LT+VE+EA
Sbjct: 1074ANSLADLDASMLDLREDESVAVNSVFEFHKLLARPGAVEKVLSVVRQIRPEILTVVEQEA 1253
Query: 373 DLEVCFGSDFVEGFKECLRWF 393
+ G FV+ F E L ++
Sbjct: 1254NHN---GLSFVDRFTESLHYY 1307
>CO981442
Length = 791
Score = 113 bits (282), Expect = 2e-25
Identities = 72/235 (30%), Positives = 114/235 (47%), Gaps = 5/235 (2%)
Frame = -2
Query: 241 LHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFA 300
+HIID Y +WP L+ L+ RS P LR+T + G Q+ + E G R+ F
Sbjct: 769 IHIIDFGIRYGFKWPALISRLSRRSGGPPKLRITGIDVPQPGLRPQERVLETGRRLANFC 590
Query: 301 RLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCV----NSLHSISGAGNHRDLFISL 356
+ VPF+F I + + DL I+ +E +A+NC+ + L N RD + L
Sbjct: 589 KRFNVPFEFNAIAQRWDTIRVEDLKIEPNEFVAVNCLFQFEHLLDETVVLNNSRDAVLRL 410
Query: 357 LRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLER 416
++ P + +V F FV F+E L + F+ LD + +R RLM E+
Sbjct: 409 IKNANPDIFVHGIVNGSYDVPF---FVSRFREALFHYTALFDMLDTNVARQDPMRLMFEK 239
Query: 417 EA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLR 470
E GR IV+++AC+ +E VER +T +W+ R GF + + ++ LR
Sbjct: 238 ELFGREIVNIIACEGFERVERPQTYKQWQLRNMRNGFRLLPLDHRIIGKLKDRLR 74
>TC219232 similar to UP|Q9LDL7 (Q9LDL7) SCARECROW gene regulator-like
(Phytochrome A signal transduction 1 protein), partial
(38%)
Length = 881
Score = 100 bits (250), Expect = 1e-21
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 5/186 (2%)
Frame = +3
Query: 323 DLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLTIVEEEADLEVCF 378
++++ EALA++ LH + NHRD + L++ L P+V+TIVE+E++
Sbjct: 24 NIEVLPGEALAVSFPYVLHHMPDESVSTENHRDRLLRLVKRLSPKVVTIVEQESNTNT-- 197
Query: 379 GSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERR 437
S F F E L ++ FE++D + R +R+ E+ R IV+++AC+ E VER
Sbjct: 198 -SPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERH 374
Query: 438 ETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVV 497
E +WR RL GF S V ++ LL+ + + + + DG ++L W ++ +
Sbjct: 375 ELLGKWRSRLSMAGFKQCQLSSSVMVAIQNLLKEFSQNYRLEHRDG--ALYLGWMNRHMA 548
Query: 498 WASVWR 503
+S WR
Sbjct: 549 TSSAWR 566
>TC230486 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (44%)
Length = 886
Score = 96.7 bits (239), Expect = 2e-20
Identities = 60/215 (27%), Positives = 105/215 (47%), Gaps = 4/215 (1%)
Frame = +2
Query: 292 IGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAG---- 347
+G + + A +G+ F+FK++ + EL L DE LA+N L+ +
Sbjct: 53 VGVLLGRHAEKLGIGFEFKVLTRRIAELTRESLGCDADEPLAVNFAYKLYRMPDESVSTE 232
Query: 348 NHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRT 407
N RD + ++ L PRV+T+VE++A+ + FV E ++ F++L+ + +R
Sbjct: 233 NPRDKLLRRVKTLAPRVVTLVEQDANANT---APFVARVTELCAYYGALFDSLESTMARE 403
Query: 408 SSERLMLEREAGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRA 467
+ +R+ +E R +V+ VAC+ + VER E +WR R+ GF S V D ++A
Sbjct: 404 NLKRVRIEEGLSRKVVNSVACEGRDRVERCEVFGKWRARMSMAGFRLKPLSQRVADSIKA 583
Query: 468 LLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVW 502
L ++ +G GI W + + AS W
Sbjct: 584 RLGGAGNRVAVKVENG--GICFGWMGRTLTVASAW 682
>TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-like
protein, partial (44%)
Length = 751
Score = 95.1 bits (235), Expect = 6e-20
Identities = 56/177 (31%), Positives = 89/177 (49%)
Frame = +1
Query: 133 ILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKT 192
+LL+ A + +N + L+ + ELS+PYG + +++ +YF QAL +R+ + +Y
Sbjct: 202 LLLQCAECVAMDNLDFANDLLPEIAELSSPYGTSPERVGAYFAQALQARVVSSCIGSYSP 381
Query: 193 LTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCT 252
LT S + VSP F H AN AI +AL+G ++HIID+
Sbjct: 382 LTAKSVTLTQSQKIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGL 561
Query: 253 QWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKF 309
QWP L LA+RS +R+T GS +++ G R+ A +G+PF+F
Sbjct: 562 QWPGLFHILASRSKKIRSVRIT------GFGSSSELLDSTGRRLADXASSLGLPFEF 714
>TC210169 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (47%)
Length = 872
Score = 94.0 bits (232), Expect = 1e-19
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 4/200 (2%)
Frame = +1
Query: 307 FKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEP 362
F+FK++ + EL LD DEALA+N L+ + N RD + ++ L P
Sbjct: 91 FEFKVLIRRIAELTRESLDCDADEALAVNFAYKLYRMPDESVSTENPRDELLRRVKALAP 270
Query: 363 RVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGI 422
RV+T+VE+EA+ + FV E ++ F++L+ + +R +S R+ +E R +
Sbjct: 271 RVVTLVEQEANANT---APFVARVSELCAYYGALFDSLESTMARENSARVRIEEGLSRKV 441
Query: 423 VDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSD 482
+ VAC+ VER E +WR R+ GF S V + ++A L ++ +
Sbjct: 442 GNSVACEGRNRVERCEVFGKWRARMSMAGFRLKPLSQRVAESIKARLGGAGNRVAVKVEN 621
Query: 483 GDTGIFLSWKDKPVVWASVW 502
G GI W + + AS W
Sbjct: 622 G--GICFGWMGRTLTVASAW 675
>TC208938 weakly similar to UP|Q7X9T5 (Q7X9T5) SCARECROW-like protein,
partial (31%)
Length = 915
Score = 92.8 bits (229), Expect = 3e-19
Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
Frame = +2
Query: 261 LATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELN 320
L+ R P LR+ + G + ++E G +EK+ + GVPF++ + +
Sbjct: 2 LSERPGGPPKLRMMGIDLPQPGFRPAERVEETGRWLEKYCKRFGVPFEYNCLAQKWETIR 181
Query: 321 LCDLDIKEDEALAINCVNSLHSISG----AGNHRDLFISLLRGLEPRVLTIVEEEADLEV 376
L DL I E +NC+ L ++S A RD + L+R + P +
Sbjct: 182 LEDLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNA 361
Query: 377 CFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVE 435
F FV F+E L F F+ + + R RLM+E+ GR ++++AC+ E VE
Sbjct: 362 PF---FVTRFREALFHFSSLFDMFEANVPREDPSRLMIEKGLFGRDAINVIACEGAERVE 532
Query: 436 RRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKP 495
R ET +W+ R GF + + E + V+ ++++ + DG + WK +
Sbjct: 533 RPETYKQWQVRNQRAGFKQLPLAPEHVNRVKEMVKKEHHKDFVVDEDG-KWVLQGWKGRI 709
Query: 496 VVWASVWRP 504
+ S W P
Sbjct: 710 LFAVSSWVP 736
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,511,744
Number of Sequences: 63676
Number of extensions: 368116
Number of successful extensions: 2906
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2808
length of query: 504
length of database: 12,639,632
effective HSP length: 101
effective length of query: 403
effective length of database: 6,208,356
effective search space: 2501967468
effective search space used: 2501967468
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147000.1