TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146972.3 + phase: 0 
         (240 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922226                                                              134  3e-32
AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    53  1e-07
CA937893 similar to GP|20805072|dbj retrovirus-related pol polyp...    45  4e-05
TC231744                                                               42  2e-04
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p...    40  0.001
CO984791                                                               40  0.001
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G...    39  0.002
TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen...    39  0.003
TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp...    38  0.004
TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp...    38  0.004
TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp...    38  0.004
CO982951                                                               37  0.006
TC206177 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G...    36  0.014
TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicas...    36  0.014
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein...    35  0.023
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part...    34  0.068
CO984873                                                               33  0.15
TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%)        32  0.20
TC208012 similar to UP|Q761Z7 (Q761Z7) BRI1-KD interacting prote...    32  0.34
TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1,...    32  0.34

>CF922226 
          Length = 667

 Score =  134 bits (338), Expect = 3e-32
 Identities = 77/191 (40%), Positives = 113/191 (58%), Gaps = 24/191 (12%)
 Frame = -3

Query: 47  MTKSLAHRQFLKQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCAL 106
           MTKSL +R + KQ LYSF+M E +++ EQL  FNK++ DLENI+V ++DED+A+LLLC L
Sbjct: 665 MTKSLVNRLYXKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYL 486

Query: 107 PKSFESFKNTMLYGKEGTVTLEEIQAALRTKELTNSKD-LTHEHDEGLSV---------- 155
           PKS+  FK T+L+G++ +V+L+E+Q AL +KEL   K+  +    EGL+           
Sbjct: 485 PKSYSHFKETLLFGRD-SVSLDEVQTALNSKELNERKEKKSSASGEGLTARGKTFKKDSE 309

Query: 156 -SRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPE------------INGNSAQIVY 202
             +        +   GN  +  C++C K GH +K CPE             +GN+A +  
Sbjct: 308 FDKKKQKPENQKNGEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNNRKKDSGNAAIVQD 129

Query: 203 EGYEDVGALMV 213
           +GYE   ALMV
Sbjct: 128 DGYESAEALMV 96


>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +3

Query: 1   MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESL 45
           M+  +K  ++ KA +AI+L LGDKVLR+V+KE TA  +W+KLE L
Sbjct: 213 MADGDKKALLQKAYNAIILSLGDKVLRQVSKETTAVGVWSKLEVL 347


>CA937893 similar to GP|20805072|dbj retrovirus-related pol polyprotein from
           transposon TNT 1-94-like, partial (7%)
          Length = 412

 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = -2

Query: 8   EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
           E+ ++  + I LCL D+ L  + + A    +W KLES YM KSL ++ +L Q+LY
Sbjct: 168 EL*ERTATTIRLCLVDEFLYHMMELAFPGEVWKKLESQYMLKSLTNKLYLMQKLY 4


>TC231744 
          Length = 794

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 30/136 (22%), Positives = 58/136 (42%)
 Frame = +2

Query: 57  LKQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNT 116
           L  +L S +      I E + E + +   L++++++L ++    L+L +LP  F  FK +
Sbjct: 41  LLDKLISMKYKGKGNIREYIMEISNLASKLKSLKLELGEDLFVHLVLISLPAHFGQFKVS 220

Query: 117 MLYGKEGTVTLEEIQAALRTKELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFE 176
               K+     E I   ++ +E          H++    ++        ++K      F 
Sbjct: 221 YNTQKDKWSLNELISHCVQEEERL*RDRTESAHNKKRKKTKDVAEKTS*QKKQQKDEEFT 400

Query: 177 CFNCHKMGHFKKDCPE 192
           C+ C K  H KK CP+
Sbjct: 401 CYFCKKSRHMKKKCPK 448


>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
           partial (45%)
          Length = 995

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 158 GNGG--GRGNRRKSGNKSRFECFNCHKMGHFKKDCPEI-NGNSAQIVYEGYEDVGALMV 213
           G GG  GR  RR  G      CFNC + GHF ++CP +  GN  + V     ++  L++
Sbjct: 482 GGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFARECPNVGKGNE*ECVMVSSIELSLLLL 658



 Score = 36.6 bits (83), Expect = 0.011
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           G G GRG  R+ G     EC+NC ++GH  +DC
Sbjct: 377 GEGRGRGFGRRGGGP---ECYNCGRIGHLARDC 466


>CO984791 
          Length = 672

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 33/140 (23%), Positives = 62/140 (43%), Gaps = 6/140 (4%)
 Frame = -3

Query: 57  LKQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNT 116
           L  +L S +      I E + E + +   L++++++L ++    L+L +LP  F  FK +
Sbjct: 607 LLAKLISMKYKGKGNIREYIIEMSNLASKLKSLKLELGEDLLMYLVLISLPAHFGQFKVS 428

Query: 117 MLYGKEGTVTLEEIQAALRTKEL-----TNSKDL-THEHDEGLSVSRGNGGGRGNRRKSG 170
               K+     E I   ++ +E      T S  L +   ++    ++G   G   ++K  
Sbjct: 427 YNT*KDKWSLNELISHCVQEEESL*RDRTESAHLISTSQNKKWKKTKGAA*GTS*QKKQN 248

Query: 171 NKSRFECFNCHKMGHFKKDC 190
               F C+   K GH KK+C
Sbjct: 247 KDEEFACYFYKKSGHMKKEC 188


>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
           (AT4g38680/F20M13_240), partial (42%)
          Length = 891

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 15/32 (46%), Positives = 18/32 (55%)
 Frame = +3

Query: 160 GGGRGNRRKSGNKSRFECFNCHKMGHFKKDCP 191
           GGG G R   G      C+NC + GHF +DCP
Sbjct: 279 GGGGGGRYGGGGGGGGSCYNCGESGHFARDCP 374



 Score = 29.6 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 18/42 (41%)
 Frame = +3

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEINGNSAQ 199
           G GGG G     G      C+ C + GH  +DC +  G   +
Sbjct: 183 GGGGGYGGGGGGGGGG---CYKCGETGHIARDCSQGGGGGGR 299


>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
           (22%)
          Length = 742

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = +2

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEING 195
           G GGG G     G KS   CFNC K GHF ++C E +G
Sbjct: 380 GGGGGSGG---GGGKST--CFNCGKPGHFARECVEASG 478



 Score = 32.0 bits (71), Expect = 0.26
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +2

Query: 154 SVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEINGNSAQI 200
           S S G GGG G            CFNC   GH  +DC    G S  I
Sbjct: 95  SNSGGGGGGSGGG----------CFNCGGFGHLARDCVRGGGGSVGI 205



 Score = 31.6 bits (70), Expect = 0.34
 Identities = 17/45 (37%), Positives = 19/45 (41%)
 Frame = +2

Query: 152 GLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEINGN 196
           G SV  G GGG G+           CF C   GH  +DC    GN
Sbjct: 188 GGSVGIGGGGGGGS-----------CFRCGGFGHMARDCATGKGN 289



 Score = 27.7 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 155 VSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           ++R    G+GN    G  S   CF C ++GH  +DC
Sbjct: 257 MARDCATGKGNI--GGGGSGGGCFRCGEVGHLARDC 358



 Score = 26.9 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (50%)
 Frame = +2

Query: 162 GRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           G G RR  G  +   C+ C + GH  +DC
Sbjct: 5   GFGARRNGGGGAA--CYQCGEFGHLARDC 85


>TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
           factor), partial (89%)
          Length = 936

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +2

Query: 156 SRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           SRG GGGRG R  SG  S  +C+ C + GHF ++C
Sbjct: 284 SRGGGGGRGGR--SGG-SDLKCYECGEPGHFAREC 379


>TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
           factor), partial (72%)
          Length = 820

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 156 SRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           SRG GGGRG R  SG  S  +C+ C + GHF ++C
Sbjct: 193 SRGGGGGRGGR--SGG-SDLKCYECGEPGHFAREC 288


>TC226202 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
           factor), partial (72%)
          Length = 1003

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +3

Query: 156 SRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           SRG GGGRG R  SG  S  +C+ C + GHF ++C
Sbjct: 780 SRGGGGGRGGR--SGG-SDLKCYECGEPGHFAREC 875


>CO982951 
          Length = 757

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 137 KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPE 192
           +E  + K    +HD+G    + N   +  ++K+  ++   C  C K GHF+KDCP+
Sbjct: 338 RESRS*KKFVKKHDKGKGPLKINNNSKQIQKKTSKRNN--CHFCGKSGHFQKDCPK 177


>TC206177 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
           (AT4g38680/F20M13_240), partial (22%)
          Length = 406

 Score = 36.2 bits (82), Expect = 0.014
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCP 191
           G GGGR      G      C++C + GHF +DCP
Sbjct: 49  GGGGGRYGGGGGGGGGGGSCYSCGESGHFARDCP 150


>TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicase, partial
           (3%)
          Length = 868

 Score = 36.2 bits (82), Expect = 0.014
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 160 GGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEIN 194
           GG R +R  S ++    CFNC + GH   DCP ++
Sbjct: 261 GGRRSSRPSSSDRFGGTCFNCGESGHRASDCPNVS 365


>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
           (77%)
          Length = 883

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 17/45 (37%), Positives = 24/45 (52%)
 Frame = +3

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPEINGNSAQIVY 202
           G GGGR      G      C++C + GHF +DCP    +SA+ +Y
Sbjct: 534 GGGGGRYVGGGGGGGGGGSCYSCGESGHFARDCP----SSAR*IY 656



 Score = 32.0 bits (71), Expect = 0.26
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 158 GNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
           G GGG G   + G      C+NC + GH  +DC
Sbjct: 384 GGGGGYGGGGRGGGGGA--CYNCGESGHLARDC 476


>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
          Length = 1138

 Score = 33.9 bits (76), Expect = 0.068
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 156 SRGNGGGRGNRRKSGNKSR-FECFNCHKMGHFKKDC 190
           S G GGG G R   G   R   C NC ++GH  +DC
Sbjct: 776 SGGGGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDC 883



 Score = 28.5 bits (62), Expect = 2.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 177 CFNCHKMGHFKKDCP 191
           C NC K GH  +DCP
Sbjct: 650 CNNCRKTGHLARDCP 694



 Score = 27.3 bits (59), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 177 CFNCHKMGHFKKDCPEI 193
           C NC + GH+ ++CP +
Sbjct: 344 CKNCKRPGHYARECPNV 394


>CO984873 
          Length = 754

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
 Frame = -2

Query: 172 KSRFECFNCHKMGHFKKDCPEING--NSAQIVYEGYEDVGALMVWCCLEDEEGDVSH 226
           K+  +CF C+K GH KKDC +     N   I ++          + C E  + +V+H
Sbjct: 372 KNESKCFFCNKKGHIKKDCSKFKSWLNKKNIPFD----------FVCYESNKVNVNH 232


>TC217411 similar to UP|Q8L7S8 (Q8L7S8) At5g26740, partial (26%)
          Length = 1275

 Score = 32.3 bits (72), Expect = 0.20
 Identities = 13/32 (40%), Positives = 17/32 (52%)
 Frame = +3

Query: 160 GGGRGNRRKSGNKSRFECFNCHKMGHFKKDCP 191
           G  R +R  S ++    CFNC + GH   DCP
Sbjct: 765 GSRRSSRPSSSDRFGGACFNCGESGHRASDCP 860


>TC208012 similar to UP|Q761Z7 (Q761Z7) BRI1-KD interacting protein 117
           (Fragment), partial (38%)
          Length = 993

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 143 KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDCPE 192
           K+ T   ++ L   +  G G  +  K  + +   C+ C K GH  +DC E
Sbjct: 34  KEETSSENDTLDQGKKPGSGPSDAPKVPSDAPKICYKCKKAGHLSRDCKE 183


>TC210743 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
           (53%)
          Length = 452

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +3

Query: 105 ALPKSFESFKNTMLYGKEGTVTLEEIQAALRTKELTNSKDLTHEHDEGLSVSRGNGGGRG 164
           A+ ++ ++     L G+  T+T++  Q     ++ +   D     + G    R +GGG G
Sbjct: 240 AMDEAIDAMNGMDLDGR--TITVDRAQP----QQGSTRDDGDRYRERGRDRDRDHGGGGG 401

Query: 165 NRRKSGNKSRFECFNCHKMGHF 186
                G     ECF C K GHF
Sbjct: 402 RGSNGG-----ECFKCGKPGHF 452


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,543,911
Number of Sequences: 63676
Number of extensions: 113401
Number of successful extensions: 806
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of query: 240
length of database: 12,639,632
effective HSP length: 94
effective length of query: 146
effective length of database: 6,654,088
effective search space: 971496848
effective search space used: 971496848
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)