BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.5 - phase: 0
(191 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209397 similar to UP|V711_ARATH (O49377) Vesicle-associated me... 275 7e-75
TC205374 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated me... 246 6e-66
TC221123 weakly similar to UP|V713_ARATH (Q9LFP1) Vesicle-associ... 180 3e-46
TC205375 similar to GB|AAM51590.1|21436025|AY116956 AT5g22360/MW... 170 3e-43
AI496121 similar to SP|O49377|V711_ Vesicle-associated membrane ... 150 5e-37
TC225699 similar to UP|V722_ARATH (P47192) Vesicle-associated me... 149 6e-37
TC225700 similar to UP|V722_ARATH (P47192) Vesicle-associated me... 149 8e-37
TC225269 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protei... 147 3e-36
TC228574 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protei... 142 7e-35
TC225266 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protei... 107 2e-32
TC217572 homologue to UP|V724_ARATH (O23429) Vesicle-associated ... 130 3e-31
BM527171 similar to SP|O49377|V711_ Vesicle-associated membrane ... 128 2e-30
TC225268 similar to UP|V722_ARATH (P47192) Vesicle-associated me... 127 4e-30
TC207792 similar to UP|V727_ARATH (Q9M376) Vesicle-associated me... 87 2e-22
TC223014 similar to UP|V725_ARATH (O48850) Vesicle-associated me... 62 3e-19
CA852038 similar to SP|Q9M376|V727 Vesicle-associated membrane p... 82 8e-18
TC207791 similar to UP|V727_ARATH (Q9M376) Vesicle-associated me... 86 1e-17
TC205373 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated me... 66 9e-12
TC217573 similar to UP|V724_ARATH (O23429) Vesicle-associated me... 63 7e-11
AI966662 similar to SP|P47192|V722 Vesicle-associated membrane p... 62 2e-10
>TC209397 similar to UP|V711_ARATH (O49377) Vesicle-associated membrane
protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C)
(AtVAMP7C), partial (69%)
Length = 520
Score = 275 bits (704), Expect = 7e-75
Identities = 135/152 (88%), Positives = 147/152 (95%)
Frame = +2
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
MGILYALV RG+VVLAEF+GTTTNA+AIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG
Sbjct: 65 MGILYALVGRGSVVLAEFSGTTTNASAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 244
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120
LTVLCMADD+ GRRIPFAFLE+IHQ+FVR+YGRAV +A+ Y MN+EFSRVL+QQMEY+SS
Sbjct: 245 LTVLCMADDTAGRRIPFAFLEDIHQKFVRTYGRAVHSAQPYGMNEEFSRVLSQQMEYYSS 424
Query: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRG 152
DPNADRINRLKGEMSQVRNVMIENIDKVLDRG
Sbjct: 425 DPNADRINRLKGEMSQVRNVMIENIDKVLDRG 520
>TC205374 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated membrane
protein 714 (AtVAMP714), partial (98%)
Length = 1159
Score = 246 bits (627), Expect = 6e-66
Identities = 111/190 (58%), Positives = 154/190 (80%)
Frame = +1
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
M I YALVARGTVVLAEF+ T N A++R+ILEK+P +D+ + +SQDRYIFH+ R+DG
Sbjct: 109 MAIFYALVARGTVVLAEFSAVTGNTGAVSRRILEKLPAESDSRLCFSQDRYIFHILRSDG 288
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120
+T +CMA+D+ GRRIPF++LE+I RF+++Y R A AYAMNDEFSRVL+QQME+FSS
Sbjct: 289 ITYVCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSS 468
Query: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
+ +AD +NR++GE+ ++R +M++NI+K+L+RGDR+ELLVDK A MQ + F FRKQ++R R
Sbjct: 469 NTSADTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLR 648
Query: 181 STVWWRNVKL 190
+W +N KL
Sbjct: 649 RALWMKNFKL 678
>TC221123 weakly similar to UP|V713_ARATH (Q9LFP1) Vesicle-associated
membrane protein 713 (AtVAMP713), partial (65%)
Length = 660
Score = 180 bits (457), Expect = 3e-46
Identities = 81/116 (69%), Positives = 105/116 (89%)
Frame = +1
Query: 76 PFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSSDPNADRINRLKGEMS 135
PFAFLE+IH++FV++Y RA+L+A AYAMNDEFSRVLNQQMEY+S+DPNADR+NRLKGEM+
Sbjct: 148 PFAFLEDIHKKFVKTYARAILSAPAYAMNDEFSRVLNQQMEYYSNDPNADRLNRLKGEMT 327
Query: 136 QVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWWRNVKLT 191
QVR VMI+NIDKVL+RG RLELLV+K + M N+ RF++Q+RR+++ +WW NV+LT
Sbjct: 328 QVRTVMIDNIDKVLERGGRLELLVEKTSAMNSNSIRFKRQSRRYKNNLWWSNVRLT 495
>TC205375 similar to GB|AAM51590.1|21436025|AY116956 AT5g22360/MWD9_16
{Arabidopsis thaliana;} , partial (91%)
Length = 525
Score = 170 bits (431), Expect = 3e-43
Identities = 79/129 (61%), Positives = 105/129 (81%)
Frame = +1
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
M I YALVARGTVVLAEF+ T N A++R+ILEK+P +D+ + +SQDRYIFH+ R+DG
Sbjct: 139 MAIFYALVARGTVVLAEFSAVTGNTGAVSRRILEKLPAESDSRLCFSQDRYIFHILRSDG 318
Query: 61 LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120
+T +CMA+D+ GRRIPF++LE+I RF+++Y R A AYAMNDEFSRVL+QQME+FSS
Sbjct: 319 ITYVCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSS 498
Query: 121 DPNADRINR 129
+ +AD +NR
Sbjct: 499 NASADTLNR 525
>AI496121 similar to SP|O49377|V711_ Vesicle-associated membrane protein 711
(AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C).,
partial (36%)
Length = 337
Score = 150 bits (378), Expect = 5e-37
Identities = 73/81 (90%), Positives = 77/81 (94%)
Frame = +2
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60
MGILYALV RG+VVLAEF+GTTTNA+AIARQILEK PGNND HVSYSQDRYIFHVKRTDG
Sbjct: 95 MGILYALVGRGSVVLAEFSGTTTNASAIARQILEKTPGNNDMHVSYSQDRYIFHVKRTDG 274
Query: 61 LTVLCMADDSVGRRIPFAFLE 81
LTVLCMADD+ GRRIPFAFLE
Sbjct: 275 LTVLCMADDTAGRRIPFAFLE 337
>TC225699 similar to UP|V722_ARATH (P47192) Vesicle-associated membrane
protein 722 (AtVAMP722) (Synaptobrevin-related protein
1), complete
Length = 1345
Score = 149 bits (377), Expect = 6e-37
Identities = 76/190 (40%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Frame = +1
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++Y+ VARGTV+LAE+T T N ++A Q L+K+P +N+ +Y+ D + F+ +G T
Sbjct: 208 LIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVDNGFT 384
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSY-GRAVLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+A +S GR+IP AFLE I + F + Y G TA A+++N EF L ++M+Y
Sbjct: 385 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 564
Query: 122 PNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V+ VM+ENI+KVLDRG+++ELLVDK N++ FR+Q + R
Sbjct: 565 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIR 744
Query: 181 STVWWRNVKL 190
+W++N+K+
Sbjct: 745 RKMWFQNMKI 774
>TC225700 similar to UP|V722_ARATH (P47192) Vesicle-associated membrane
protein 722 (AtVAMP722) (Synaptobrevin-related protein
1), complete
Length = 1191
Score = 149 bits (376), Expect = 8e-37
Identities = 77/190 (40%), Positives = 123/190 (64%), Gaps = 2/190 (1%)
Frame = +1
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++Y+ VARGTV+LAE+T T N +A Q L+K+P +N+ +Y+ D + F+ +G T
Sbjct: 193 LIYSFVARGTVILAEYTEFTGNFTGVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVDNGFT 369
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSY-GRAVLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+A +S GR+IP AFLE I + F + Y G TA A ++N EF L +QM+Y
Sbjct: 370 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAQSLNREFGPKLKEQMQYCVDH 549
Query: 122 PNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V+ VM+ENI+KVLDRG+++ELLVDK N++ FR+Q + R
Sbjct: 550 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIR 729
Query: 181 STVWWRNVKL 190
+W++N+K+
Sbjct: 730 RKMWFQNMKI 759
>TC225269 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protein, complete
Length = 1129
Score = 147 bits (371), Expect = 3e-36
Identities = 77/190 (40%), Positives = 119/190 (62%), Gaps = 2/190 (1%)
Frame = +1
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++YA V+RGTV+LAE+T + N +IA Q L+K+P N+ +Y+ D + F+ +G T
Sbjct: 307 LIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKF-TYNCDAHTFNYLVDNGYT 483
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+AD+S+GR++P AFLE + FV YG TA A ++N EF L + M+Y
Sbjct: 484 YCVVADESIGRQLPMAFLERVKDEFVAKYGGGKAATAPANSLNKEFGPKLREHMQYCVDH 663
Query: 122 PNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V+ VM+ENI+KVLDRGD++ELLVDK N+ FR R R
Sbjct: 664 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIR 843
Query: 181 STVWWRNVKL 190
+W +N+K+
Sbjct: 844 RKMWLQNMKI 873
>TC228574 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protein, complete
Length = 976
Score = 142 bits (359), Expect = 7e-35
Identities = 74/190 (38%), Positives = 119/190 (61%), Gaps = 2/190 (1%)
Frame = +1
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++YA V+RGTV+LAE+T + N IA Q L+K+P +N+ +Y+ D + F+ +G T
Sbjct: 172 LIYAFVSRGTVILAEYTEFSGNFNTIAFQCLQKLPASNNKF-TYNCDGHTFNYLVDNGFT 348
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+AD+S+GR++P AFLE + FV YG T A ++N EF L + M+Y
Sbjct: 349 YCVVADESIGRQVPVAFLERVKDDFVAKYGGGKAATVAANSLNKEFGSKLKEHMQYCVEH 528
Query: 122 PNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFR 180
P ++ ++K ++S+V++VM+ENI+KVLDRG+++ELLVDK N+ FR + R
Sbjct: 529 PEEISKLAKVKAQVSEVKDVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIR 708
Query: 181 STVWWRNVKL 190
+W +N+K+
Sbjct: 709 RKMWLQNMKI 738
>TC225266 similar to UP|Q84SZ1 (Q84SZ1) Synaptobrevin-like protein, complete
Length = 1085
Score = 107 bits (268), Expect(2) = 2e-32
Identities = 58/148 (39%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Frame = +2
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++YA V+RGTV+LAE+T + N +IA Q L+K+P N+ +Y+ D + F+ +G T
Sbjct: 242 LIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKF-TYNCDAHTFNYLVDNGYT 418
Query: 63 VLCMADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSD 121
+AD+S+GR++P AFLE + FV YG TA A ++N EF L + M+Y
Sbjct: 419 YCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDH 598
Query: 122 P-NADRINRLKGEMSQVRNVMIENIDKV 148
P ++ ++K ++S+V+ VM+ENI+KV
Sbjct: 599 PEEISKLAKVKAQVSEVKGVMMENIEKV 682
Score = 48.1 bits (113), Expect(2) = 2e-32
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 140 VMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWWRNVKL 190
++ E KVLDRGD++ELLVDK N+ FR R R +W +N+K+
Sbjct: 711 LLAEMYIKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKI 863
>TC217572 homologue to UP|V724_ARATH (O23429) Vesicle-associated membrane
protein 724 (AtVAMP724) (SYBL1-like protein), complete
Length = 1012
Score = 130 bits (328), Expect = 3e-31
Identities = 69/189 (36%), Positives = 113/189 (59%), Gaps = 2/189 (1%)
Frame = +2
Query: 4 LYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTV 63
+Y+ VARGT+VLAE+T T N AIA Q L+K+P +N+ +Y+ D + F+ DG
Sbjct: 71 IYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKF-TYNCDHHTFNFLVEDGYAY 247
Query: 64 LCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVL-TAEAYAMNDEFSRVLNQQMEYFSSDP 122
+A +SV ++I AFLE + F + YG TA A ++N EF V+ + M+Y
Sbjct: 248 CVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHA 427
Query: 123 NA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRS 181
+++ ++K ++S+V+++M+ENIDK +DRG+ L +L DK F+KQ R
Sbjct: 428 EEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETXHSQAQEFKKQGTHVRR 607
Query: 182 TVWWRNVKL 190
+W++N+K+
Sbjct: 608 KMWYQNMKI 634
>BM527171 similar to SP|O49377|V711_ Vesicle-associated membrane protein 711
(AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C).,
partial (38%)
Length = 422
Score = 128 bits (321), Expect = 2e-30
Identities = 62/93 (66%), Positives = 77/93 (82%), Gaps = 4/93 (4%)
Frame = +3
Query: 1 MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKI----PGNNDTHVSYSQDRYIFHVK 56
MGILY +VARG VVLAEF+ T +NA+ +A+QIL KI NND++VS+S DRY+FHVK
Sbjct: 144 MGILYGMVARGQVVLAEFSATQSNASVVAKQILSKINQGSDNNNDSNVSFSHDRYVFHVK 323
Query: 57 RTDGLTVLCMADDSVGRRIPFAFLEEIHQRFVR 89
RTDGLTVLCMADD+ GR PFAFLE+IH++FV+
Sbjct: 324 RTDGLTVLCMADDAFGRIAPFAFLEDIHKKFVK 422
>TC225268 similar to UP|V722_ARATH (P47192) Vesicle-associated membrane
protein 722 (AtVAMP722) (Synaptobrevin-related protein
1), partial (92%)
Length = 978
Score = 127 bits (318), Expect = 4e-30
Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
Frame = +2
Query: 8 VARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTVLCMA 67
V+RG V+LAE+ + N +IA Q L+K+P N+ +Y D + F+ +G
Sbjct: 5 VSRGXVILAEYXEFSGNFNSIAFQCLQKLPATNNKF-TYXXDAHTFNYLVDNGY------ 163
Query: 68 DDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSDPNA-D 125
++S+GR++P AFLE + FV YG TA A ++N EF L + M+Y P
Sbjct: 164 NESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEIS 343
Query: 126 RINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWW 185
++ ++K ++S+V+ VM+ENI+KVLDRGD++ELLVDK N+ FR R R +W
Sbjct: 344 KLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWL 523
Query: 186 RNVKL 190
+N+K+
Sbjct: 524 QNMKI 538
>TC207792 similar to UP|V727_ARATH (Q9M376) Vesicle-associated membrane
protein 727 (AtVAMP727), partial (88%)
Length = 812
Score = 87.0 bits (214), Expect(2) = 2e-22
Identities = 42/137 (30%), Positives = 79/137 (57%), Gaps = 21/137 (15%)
Frame = +2
Query: 75 IPFAFLEEIHQRFVRSYGRAVLT--------------------AEAYAMNDEFSRVLNQQ 114
+PF FLE + F++ YG ++ + AY ++ EF L +
Sbjct: 152 VPFVFLERVKDDFMKRYGASIKNDGAHPLADDEDDDDLFEDRFSIAYNLDREFGPALKEH 331
Query: 115 MEYFSSDPNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFR 173
M+Y + P ++++LK ++++V+ +M++NI+KVLDRG+++ELLVDK N+Q F+
Sbjct: 332 MQYCMNHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQ 511
Query: 174 KQARRFRSTVWWRNVKL 190
+Q R+ R +W +N+++
Sbjct: 512 RQGRQLRRKMWLQNLQM 562
Score = 35.4 bits (80), Expect(2) = 2e-22
Identities = 21/54 (38%), Positives = 31/54 (56%)
Frame = +3
Query: 13 VVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLTVLCM 66
VVLAE T T N + IA Q L+K+P N+ + +YS D + F+ +G V +
Sbjct: 3 VVLAEHTQYTGNFSTIAVQCLQKLPSNSSKY-TYSCDGHTFNXXLDNGFGVFLL 161
>TC223014 similar to UP|V725_ARATH (O48850) Vesicle-associated membrane
protein 725 (AtVAMP725), partial (77%)
Length = 539
Score = 62.4 bits (150), Expect(2) = 3e-19
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Frame = +3
Query: 66 MADDSVGRRIPFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSDPN- 123
+A +SVGR++ A+LE I + F + YG TA A ++N EF L + M+Y P
Sbjct: 228 VAVESVGRQLAMAYLERIMEDFSKRYGGGKATTATAKSLNKEFGSKLKEHMQYCVEHPEE 407
Query: 124 ADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAANM 165
++ ++K ++S+V+ VM NID LDR ++++LV + ++
Sbjct: 408 VSKLAKVKAQVSEVQQVMRANIDXGLDRQVKIDVLVGQTEDL 533
Score = 49.3 bits (116), Expect(2) = 3e-19
Identities = 23/63 (36%), Positives = 41/63 (64%)
Frame = +2
Query: 3 ILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGLT 62
++Y+ +ARGT++LAE T + N A +A Q L+++P +D +Y+ D + F+ +G T
Sbjct: 41 LIYSFMARGTMILAEHTDFSGNFAEVALQCLQRLPA-SDNKCTYNADGHTFNYLTYNGFT 217
Query: 63 VLC 65
+LC
Sbjct: 218 LLC 226
>CA852038 similar to SP|Q9M376|V727 Vesicle-associated membrane protein 727
(AtVAMP727). [Mouse-ear cress] {Arabidopsis thaliana},
partial (62%)
Length = 790
Score = 81.6 bits (200), Expect(2) = 8e-18
Identities = 41/105 (39%), Positives = 66/105 (62%)
Frame = +1
Query: 2 GILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGL 61
G++Y+ VA+GTVVLAE T T N + IA Q L+K+P N+ + +YS D + F+ +G
Sbjct: 139 GLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKY-TYSCDGHTFNFLLDNGF 315
Query: 62 TVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDE 106
L +AD+S+GR +PF FLE + F++ G ++ A+ + D+
Sbjct: 316 VFLVVADESIGRSVPFVFLERVKDDFMKRCGASIKNDGAHPLADD 450
Score = 25.0 bits (53), Expect(2) = 8e-18
Identities = 27/82 (32%), Positives = 36/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 100 AYAMNDEFSRVLNQQMEY-FSSDPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELL 158
AY ++ EF L + M+Y + N I +SQ N +I KVLDRG RL
Sbjct: 489 AYNLDREFGPALKEHMQYCMNHQKNE*PIKMELK*LSQGDND--GHIGKVLDRGRRLTAG 662
Query: 159 VDKAANMQGNTFRFRKQARRFR 180
K G + KQA R +
Sbjct: 663 GKKKTYSSG--CQLPKQASRLK 722
>TC207791 similar to UP|V727_ARATH (Q9M376) Vesicle-associated membrane
protein 727 (AtVAMP727), partial (71%)
Length = 1055
Score = 85.5 bits (210), Expect = 1e-17
Identities = 54/159 (33%), Positives = 90/159 (55%), Gaps = 1/159 (0%)
Frame = +2
Query: 2 GILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDGL 61
G++Y+ VA+GTVVLAE T T N + IA Q L+K+P N+ + +YS D + F+ +G
Sbjct: 278 GLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLQKLPSNSSKY-TYSCDGHTFNFLLDNGF 454
Query: 62 TVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAM-NDEFSRVLNQQMEYFSS 120
L +AD+S+GR +PF FLE + F++ YG ++ A+ + +DE L + + FS
Sbjct: 455 VFLVVADESIGRSVPFVFLERVKDDFMKRYGASIKNDGAHPLADDEDDDDLFE--DRFSI 628
Query: 121 DPNADRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLV 159
N D R ++ R + ++N+ L G + +L+
Sbjct: 629 AYNLDSFQRQGRQLR--RKMWLQNLQMKLMVGGGILILI 739
>TC205373 similar to UP|V714_ARATH (Q9FMR5) Vesicle-associated membrane
protein 714 (AtVAMP714), partial (35%)
Length = 538
Score = 66.2 bits (160), Expect = 9e-12
Identities = 28/48 (58%), Positives = 38/48 (78%)
Frame = +2
Query: 143 ENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWWRNVKL 190
+NI+K+L+RGDR+ELLVDK A MQ + F FRKQ++R R +W +N KL
Sbjct: 2 DNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKL 145
>TC217573 similar to UP|V724_ARATH (O23429) Vesicle-associated membrane
protein 724 (AtVAMP724) (SYBL1-like protein), partial
(50%)
Length = 1151
Score = 63.2 bits (152), Expect = 7e-11
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 106 EFSRVLNQQMEYFSSDPNA-DRINRLKGEMSQVRNVMIENIDKVLDRGDRLELLVDKAAN 164
E V+ + M+Y +++ ++K ++S+V+++M+ENIDK +DRG+ L +L DK
Sbjct: 3 EXXPVMKEXMKYIIXHAEEIEKLIKVKAQVSEVKSIMLENIDKXIDRGEXLTILADKTEX 182
Query: 165 MQGNTFRFRKQARRFRSTVWWRNVKL 190
+ F+KQ R +W++N+K+
Sbjct: 183 LHSQAQEFKKQGTHVRRKMWYQNMKI 260
>AI966662 similar to SP|P47192|V722 Vesicle-associated membrane protein 722
(AtVAMP722) (Synaptobrevin- related protein 1)., partial
(64%)
Length = 436
Score = 61.6 bits (148), Expect = 2e-10
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +2
Query: 76 PFAFLEEIHQRFVRSYGRA-VLTAEAYAMNDEFSRVLNQQMEYFSSDPNA-DRINRLKGE 133
P AFLE FV YG +TA ++N EF L + M++ P ++ + K
Sbjct: 11 PMAFLERDTDEFVAKYGGGKAVTAPENSLNKEFGPKLKEHMQHCVDHPEEISKLAKAKAY 190
Query: 134 MSQVRNVMIENIDKVLDRGDRLELLVDKAANMQGNTFRFRKQARRFRSTVWWRNVKL 190
+ V + N+ KVLDR D++ELLVDK N+ F R +W N+K+
Sbjct: 191 VLAASGV*MANMVKVLDRHDKIELLVDKTENLYNQAQDFTAAGTILRRKMWLHNMKI 361
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,855,135
Number of Sequences: 63676
Number of extensions: 54868
Number of successful extensions: 432
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of query: 191
length of database: 12,639,632
effective HSP length: 92
effective length of query: 99
effective length of database: 6,781,440
effective search space: 671362560
effective search space used: 671362560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146941.5