BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.15 - phase: 0
(688 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG882562 166 2e-41
BM892478 142 4e-34
AW781991 139 5e-33
TC220316 119 6e-27
BI973310 102 7e-22
TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] ... 95 9e-20
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 94 2e-19
TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired r... 84 2e-16
BM309807 similar to GP|5764395|gb| far-red impaired response pro... 79 5e-15
BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thalia... 79 9e-15
TC222350 69 9e-12
AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {A... 61 2e-09
BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 59 5e-09
TC229006 57 3e-08
TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N... 52 9e-07
AI736705 similar to GP|11994736|db far-red impaired response pro... 50 4e-06
AW780793 47 4e-05
TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 45 8e-05
TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 45 1e-04
TC232091 45 1e-04
>BG882562
Length = 416
Score = 166 bits (421), Expect = 2e-41
Identities = 71/128 (55%), Positives = 99/128 (76%)
Frame = +3
Query: 192 EGDGKALMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTY 251
+GD + + +YF +++ N NFFY +DL+DD +RNVFW D+RSRA Y YFGDVV FD+T
Sbjct: 24 KGDPELISNYFCRIQLMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTC 203
Query: 252 LTNKFDMPFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGKAPVGIVTDQ 311
L+N +++P FVGVNHHG+S LLGCGLL+ E E+++WLF++WL CM G+ P I+T+
Sbjct: 204 LSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTIITNX 383
Query: 312 CKAVQNAI 319
CKA+Q+AI
Sbjct: 384 CKAMQSAI 407
>BM892478
Length = 429
Score = 142 bits (359), Expect = 4e-34
Identities = 64/133 (48%), Positives = 91/133 (68%)
Frame = +3
Query: 198 LMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYLTNKFD 257
L+ YF + +++ FFY +++D+ + N+FWAD RSR + +FGDV+ DT+Y +
Sbjct: 30 LLEYFQSRQAEDTGFFYAMEVDNG-NCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYL 206
Query: 258 MPFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGKAPVGIVTDQCKAVQN 317
+PFATFVGVNHH Q LLGC L++ E ESF WLF++WLR M G+ P+ ++ DQ A+Q
Sbjct: 207 VPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQR 386
Query: 318 AIELVFPTTRHRW 330
AI VFP T HR+
Sbjct: 387 AIAKVFPVTHHRF 425
>AW781991
Length = 419
Score = 139 bits (349), Expect = 5e-33
Identities = 63/136 (46%), Positives = 85/136 (62%)
Frame = +3
Query: 160 SIVNNAEGHENIPFCEKDMINYVNNEQHLIGKEGDGKALMSYFSKMREQNSNFFYDIDLD 219
+++ G + F E D NY+ N + L EGD + ++ Y +M +N NFFY + D
Sbjct: 15 ALIKEYGGISKVGFTEVDCRNYMRNNR-LRSLEGDIQLVLDYLRQMHAENPNFFYAVQGD 191
Query: 220 DDFHVRNVFWADARSRATYEYFGDVVTFDTTYLTNKFDMPFATFVGVNHHGQSTLLGCGL 279
+D + NVFWAD ++R Y +FGD VTFDTTY +N++ +PFA F GVNHHGQ L GC
Sbjct: 192 EDQSITNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAF 371
Query: 280 LSGEDTESFVWLFKSW 295
L E SFVWLFK+W
Sbjct: 372 LINESEASFVWLFKTW 419
>TC220316
Length = 988
Score = 119 bits (297), Expect = 6e-27
Identities = 67/221 (30%), Positives = 112/221 (50%)
Frame = +1
Query: 361 YDTHTTTGFEEKWCSFIDKFMLQQNDWLSGLYEERHRWAPTFVRKYFWAGMSTTQRSESM 420
Y + T W +K+ L+ + WL +Y++R W P +++ F+AG+ +ES+
Sbjct: 10 YQSQTVDEXXATWNXXXNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPM---NESL 180
Query: 421 HAFFDGYINSTTSLNQFVKQYDNALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEY 480
+FF +N+ T L +F+ +Y+ L R E+E + DFN+ + + +E+Q + Y
Sbjct: 181 DSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLY 360
Query: 481 THAKFKEVQAEFISKMNCAPSLNVVEGCFATYHVLEEVVVGGRHKENVFKVVFNQENQDF 540
T FK Q E + + EG + Y V G +++V V FN N
Sbjct: 361 TLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMVRR---CGNDMEKHV--VTFNASNISI 525
Query: 541 SCECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKN 581
SC C +FE+ G+LC HVL V +++ VP +Y+L RW +N
Sbjct: 526 SCSCQMFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRN 648
>BI973310
Length = 457
Score = 102 bits (253), Expect = 7e-22
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Frame = +3
Query: 365 TTTGFEEKWCSFIDKFMLQQNDWLSGLYEERHRWAPTFVRKYFWAGMSTTQRSESMHAFF 424
T FE W S +++F + N+WL +Y R W P ++R+ F+ +S + +E + +FF
Sbjct: 3 TIDEFESYWHSLLERFYVMDNEWLQSIYNSRQHWVPVYLRETFFGEISLNEGNEYLISFF 182
Query: 425 DGYINSTTSLNQFVKQYDNALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEYTHAK 484
DGY+ S+T+L V+QY+ A+SS EKE +AD+++ +++ + S +EKQ YT
Sbjct: 183 DGYVFSSTTLQVLVRQYEKAVSSWHEKELKADYDTTNSSPVLKTPSPMEKQAASLYTRKI 362
Query: 485 FKEVQAEFISKMNCAPSLNVVE-GCFATYHV 514
F + Q E + + P++ + + G TY V
Sbjct: 363 FMKFQEELVETL-ANPAIKIDDSGTITTYRV 452
>TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(8%)
Length = 551
Score = 95.1 bits (235), Expect = 9e-20
Identities = 53/162 (32%), Positives = 83/162 (50%), Gaps = 2/162 (1%)
Frame = +1
Query: 425 DGYINSTTSLNQFVKQYDNALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEYTHAK 484
DGY++ TS +FV +YD L + KE AD + + + + + E QL YT
Sbjct: 1 DGYVHKHTSFKEFVDKYDLVLHRKHLKEAMADLETRNVSFELKTRCNFEVQLAKVYTKEI 180
Query: 485 FKEVQAEFISKMNCAPSLNV-VEGCFATYHVLEEVVVGGRHKE-NVFKVVFNQENQDFSC 542
F++ Q+E +C + V V G TY V E V V G K F+V++ D C
Sbjct: 181 FQKFQSEVEGMYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTELDIRC 360
Query: 543 ECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKNIKR 584
CSLF ++G LC L+V ++ +P +Y+L RW+++ K+
Sbjct: 361 ICSLFNYKGYLCRRALNVLNYNGIEEIPSRYILHRWRRDFKQ 486
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 94.4 bits (233), Expect = 2e-19
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Frame = +1
Query: 245 VTFDTTYLTNKFDMPFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGKAP 304
V FDTTY +DM ++GV+++G + C LL E+ +SF W K++L M GKAP
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAP 189
Query: 305 VGIVTDQCKAVQNAIELVFPTTRHRWCLWHIMKKIPEKL-----NEYSEYKRIKSAMEGA 359
I+TD ++ AI + P T+H +C+WHI+ K + ++Y E+K A
Sbjct: 190 QTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWK----AEFHR 357
Query: 360 VYDTHTTTGFEEKWCSFIDKF 380
+Y+ FEE W +D++
Sbjct: 358 LYNLEQVEDFEEGWRQMVDQY 420
>TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like, partial (25%)
Length = 1354
Score = 84.3 bits (207), Expect = 2e-16
Identities = 55/211 (26%), Positives = 96/211 (45%)
Frame = +2
Query: 470 SSIEKQLQGEYTHAKFKEVQAEFISKMNCAPSLNVVEGCFATYHVLEEVVVGGRHKENVF 529
S +EK + G +THA FK++QAE I + C P + + + V + F
Sbjct: 44 SPLEKSVAGIFTHAVFKKIQAEVIGAVACHPKADRQDDTTIVHRVHD------METNKDF 205
Query: 530 KVVFNQENQDFSCECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKNIKRKHSYI 589
VV NQ + SC C LFE+RG LC H L V P +Y+L RW K+ K ++
Sbjct: 206 FVVVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDAKVRNIMG 385
Query: 590 KSSYCARELKPKMDRFDKLCKHFYEIAEVAAESEDATKALHETLHQFNSNKDGITDIVNR 649
+ S + ++ R++ LC+ +++E + S+++ LH+ + + + +
Sbjct: 386 EES---EHMLTRVQRYNDLCQRALKLSEEGSLSQESYGIAFHALHEAHKSCVSVNNSSKS 556
Query: 650 SFIDDSNPNNGIGIHSPVRVKCEDQGSEPSE 680
S + P G H + + + Q S+
Sbjct: 557 SPTEAGTP----GAHGQLSTEEDTQSRNMSK 637
>BM309807 similar to GP|5764395|gb| far-red impaired response protein
{Arabidopsis thaliana}, partial (15%)
Length = 428
Score = 79.3 bits (194), Expect = 5e-15
Identities = 42/113 (37%), Positives = 58/113 (51%)
Frame = +3
Query: 473 EKQLQGEYTHAKFKEVQAEFISKMNCAPSLNVVEGCFATYHVLEEVVVGGRHKENVFKVV 532
EKQ+ YTHA FK+ Q E + C + +G A + +V K+ F V
Sbjct: 48 EKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEAGDGTIAKF------IVQDYEKDEEFLVT 209
Query: 533 FNQENQDFSCECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKNIKRK 585
+N+ + + SC C LFE++G LC H LSV R VP Y+L RW K+ K K
Sbjct: 210 WNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSCVPSHYILKRWTKDAKIK 368
>BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana}, partial
(20%)
Length = 422
Score = 78.6 bits (192), Expect = 9e-15
Identities = 43/131 (32%), Positives = 69/131 (51%), Gaps = 5/131 (3%)
Frame = +1
Query: 315 VQNAIELVFPTTRHRWCLWHIMKKIPEKLN-----EYSEYKRIKSAMEGAVYDTHTTTGF 369
++ A+ PTT+H +C+W I+ K P N Y+++K A +Y+ + F
Sbjct: 13 LKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNDWK----AEFYRLYNLESVEDF 180
Query: 370 EEKWCSFIDKFMLQQNDWLSGLYEERHRWAPTFVRKYFWAGMSTTQRSESMHAFFDGYIN 429
E W F L N + LY R WA F+R +F AGM+TT +S+S++AF +++
Sbjct: 181 ELGWREMACSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLS 360
Query: 430 STTSLNQFVKQ 440
+ T L FV+Q
Sbjct: 361 AQTRLAHFVEQ 393
>TC222350
Length = 518
Score = 68.6 bits (166), Expect = 9e-12
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +3
Query: 577 RWKKNIKRKHSYIKSSYCARELKPKMDRFDKLCKHFYEIAEVAAESEDATKALHETLH 634
RW KNIKR+HS KSSY +LKP+M R+D LCK F EIAE+AAE E + + H
Sbjct: 12 RWSKNIKRRHSCTKSSYDVIQLKPQMQRYDNLCKDFNEIAELAAEFEGVSHFFQNSFH 185
>AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (7%)
Length = 256
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/78 (35%), Positives = 44/78 (55%)
Frame = +2
Query: 194 DGKALMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYLT 253
D L+ Y +M+ +N FY I LD+D V NV A RSR +Y++ GD + D Y
Sbjct: 17 DAHNLLEYCKRMQAENHGCFYAIQLDEDDRVSNVL*AGTRSRTSYKHMGDAESLDAAYGK 196
Query: 254 NKFDMPFATFVGVNHHGQ 271
+++ + +A + G N HG+
Sbjct: 197 HRYAVSYAPYTGRNCHGR 250
>BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (9%)
Length = 402
Score = 59.3 bits (142), Expect = 5e-09
Identities = 32/123 (26%), Positives = 54/123 (43%)
Frame = +2
Query: 526 ENVFKVVFNQENQDFSCECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKNIKRK 585
+ + V N +C C +FE+ GILC H+L+V T V +P Y+L RW +N K
Sbjct: 41 QKAYMVTLNHSELKANCSCQMFEYAGILCKHILTVFTVTNVLTLPPHYILKRWTRNAKNS 220
Query: 586 HSYIKSSYCARELKPKMDRFDKLCKHFYEIAEVAAESEDATKALHETLHQFNSNKDGITD 645
+ + + + R+ LCK AE + + + A L ++G+
Sbjct: 221 AGLDEHTGESHAQESLTARYGNLCKEAIRYAEEGSVTVETYNAAISGL------REGVKK 382
Query: 646 IVN 648
+ N
Sbjct: 383 VAN 391
>TC229006
Length = 991
Score = 57.0 bits (136), Expect = 3e-08
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +2
Query: 25 DDEACWKPATGMRFSCIDDVKTLYREYALKKGFRWKTRTSKKRD-DGETCYAILVCTREG 83
+D A +P GM F D K Y EYA + GF + + ++ + DG L C +EG
Sbjct: 80 EDHAIQEPYEGMEFESEDAAKIFYDEYARRLGFVMRVMSCRRPERDGRILARRLGCNKEG 259
Query: 84 ---SQGSEIPCTLKTPPSKTKNCPAKICIKLEKDGLWYISKFESRHSH 128
S + K S + C A I IK K G W I+KF H+H
Sbjct: 260 YCVSIRGKFASVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNH 403
>TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N23_12),
partial (30%)
Length = 971
Score = 52.0 bits (123), Expect = 9e-07
Identities = 37/154 (24%), Positives = 68/154 (44%)
Frame = +2
Query: 427 YINSTTSLNQFVKQYDNALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEYTHAKFK 486
++++ T L FV+Q A+ + + + + + + +E T F
Sbjct: 116 FLSAQTRLAHFVEQVAVAVDFKDQTG*QQTMQQNLQNVCLKTGAPMESHAATILTPFAFS 295
Query: 487 EVQAEFISKMNCAPSLNVVEGCFATYHVLEEVVVGGRHKENVFKVVFNQENQDFSCECSL 546
++Q + + + A S ++ +G +H E GGR KV + + SC C
Sbjct: 296 KLQEQLVLAAHYA-SFSIEDGFLVRHHTKAE---GGR------KVYWAPQEGIISCSCHQ 445
Query: 547 FEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKK 580
FEF GILC H L V + +P++Y+ RW++
Sbjct: 446 FEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRR 547
>AI736705 similar to GP|11994736|db far-red impaired response protein;
Mutator-like transposase-like protein; phytochrome A
signaling, partial (14%)
Length = 383
Score = 49.7 bits (117), Expect = 4e-06
Identities = 37/136 (27%), Positives = 63/136 (46%)
Frame = +3
Query: 81 REGSQGSEIPCTLKTPPSKTKNCPAKICIKLEKDGLWYISKFESRHSHKTSPTKRMDLHV 140
R+ Q SE T + SKT +C A + +K DG W I F H+H+ P + +
Sbjct: 27 RQNKQDSE-NSTGRRSCSKT-DCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQT 200
Query: 141 KRTIEINEDAGVRTIKTFRSIVNNAEGHENIPFCEKDMINYVNNEQHLIGKEGDGKALMS 200
+R A R ++++V +E PF + ++L + G+ K ++
Sbjct: 201 RRMYA----AMARQFAEYKTVVGLK--NEKNPF---------DKGRNLGLESGEAKLMLD 335
Query: 201 YFSKMREQNSNFFYDI 216
+F +M+ NSNFFY +
Sbjct: 336 FFIQMQNMNSNFFYAV 383
>AW780793
Length = 419
Score = 46.6 bits (109), Expect = 4e-05
Identities = 35/127 (27%), Positives = 59/127 (45%), Gaps = 8/127 (6%)
Frame = +3
Query: 4 SENLVDCGSIHDEGME---VDNSDDDEACWKPATGMRFSCIDDVKTLYREYALKKGFRWK 60
S+NL CG + +E D S D EA +P GM F+ ++ + Y Y + GF +
Sbjct: 42 SKNLEICGGEDEMFVEQPVADISTDIEAV-EPFIGMEFNSREEAREFYIAYGRRIGFTVR 218
Query: 61 TRTSKK-RDDGETCYAILVCTREGSQGSEI----PCTLKTPPSKTKNCPAKICIKLEKDG 115
+++ R + + VC++EG + + L PP+ + C A I + L G
Sbjct: 219 IHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDRVLPPPPATREGCQAMIRLALRDRG 398
Query: 116 LWYISKF 122
W ++KF
Sbjct: 399 KWVVTKF 419
>TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (65%)
Length = 866
Score = 45.4 bits (106), Expect = 8e-05
Identities = 28/98 (28%), Positives = 50/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 48 YREYALKKGFRWK-TRTSKKRDDGETCYAILVCTREGSQGSEIPCTLKTPPSKTK-NCPA 105
Y YA + GF + ++ S+ R DG LVC +EG + ++ + ++T+ C A
Sbjct: 37 YNAYATEVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKREKIVRQRAETRVGCRA 216
Query: 106 KICIKLEKDGLWYISKFESRHSHKTSPTK-RMDLHVKR 142
I ++ G W ++KF H+H +P K R D + ++
Sbjct: 217 MIMVRKLSSGKWVVAKFVKEHTHPLTPGKGRRDFYYEQ 330
>TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (63%)
Length = 1326
Score = 45.1 bits (105), Expect = 1e-04
Identities = 29/98 (29%), Positives = 49/98 (49%), Gaps = 3/98 (3%)
Frame = +1
Query: 48 YREYALKKGFRWK-TRTSKKRDDGETCYAILVCTREGSQGSEIPCTLKTPPSKTK-NCPA 105
Y YA GF + ++ S+ R DG LVC +EG + ++ + ++T+ C A
Sbjct: 19 YNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKREKIVRQRAETRVGCRA 198
Query: 106 KICIKLEKDGLWYISKFESRHSHKTSPTK-RMDLHVKR 142
I ++ G W I+KF H+H +P K R D + ++
Sbjct: 199 MIMVRKLSSGKWVIAKFVKEHTHPLTPGKGRRDFYYEQ 312
>TC232091
Length = 530
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Frame = +1
Query: 31 KPATGMRFSCIDDVKTLYREYALKKGFRWKT-RTSKKRDDGETCYAILVCTREGSQGSEI 89
+P GM F + K Y EYA ++GF + R + D + C + QG +
Sbjct: 133 EPNVGMEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNK---QGFHV 303
Query: 90 PCTLKTPP------SKTKNCPAKICIKLEKDGLWYISKFESRHSH 128
KT P S + C A + +K+ G W ++KF HSH
Sbjct: 304 RVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSH 438
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,864,345
Number of Sequences: 63676
Number of extensions: 509099
Number of successful extensions: 2608
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 2573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2595
length of query: 688
length of database: 12,639,632
effective HSP length: 104
effective length of query: 584
effective length of database: 6,017,328
effective search space: 3514119552
effective search space used: 3514119552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146941.15