BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.12 - phase: 0
(146 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234598 similar to UP|Q9LMI5 (Q9LMI5) T2D23.4 protein, partial ... 150 2e-37
TC232419 30 0.41
TC207157 29 0.70
TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g6... 28 2.1
CA801851 weakly similar to GP|20466528|gb G2484-1 protein {Arabi... 27 2.7
AI960372 27 4.6
BM885811 26 6.0
TC223171 similar to UP|Q8RW43 (Q8RW43) TCP1 protein, partial (9%) 26 6.0
TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ... 26 6.0
BE023079 26 6.0
TC203993 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ... 26 6.0
TC229969 UP|Q8LGT9 (Q8LGT9) Phosphoglycerate mutase-like protein... 26 6.0
TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragmen... 26 7.8
TC204759 similar to UP|XT30_ARATH (Q38908) Probable xyloglucan e... 26 7.8
>TC234598 similar to UP|Q9LMI5 (Q9LMI5) T2D23.4 protein, partial (17%)
Length = 640
Score = 150 bits (379), Expect = 2e-37
Identities = 76/144 (52%), Positives = 100/144 (68%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 MRPPVKRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESEL-L 59
MRPP KRVD+ DKVE+C E+GF+GSY++AT+VS L++G YV+RY LL+DD S+ L
Sbjct: 82 MRPPRKRVDFARDDKVEICGNEDGFLGSYYQATVVSRLDNGLYVVRYDTLLEDDASQQPL 261
Query: 60 METLFPKDLRPLPPRVHNPWRFELNQKVDVFDNDGWWVGEIASEKILMEKSYYYSVYFDY 119
ETLFPK+LRP PPRV + F L Q VD FDNDGWW+G++ +K + +YY VYF
Sbjct: 262 TETLFPKELRPQPPRV-SKTDFALYQCVDAFDNDGWWLGQVTGKK---DAEHYY-VYFST 426
Query: 120 CHQTIYYPCDQIRVHQELVWGDWI 143
++ I Y IRVH E G+W+
Sbjct: 427 TNEEIAYHVSAIRVHHEWSHGEWV 498
>TC232419
Length = 422
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +1
Query: 11 KVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRP 70
K G VEV EEGF ++F A I++ L+ K + Y +L+ + + L E + +
Sbjct: 214 KEGLLVEVFKDEEGFKAAWFSANILT-LKDNKAYVGYTSLVAAEGAGPLKEWVSLECDGD 390
Query: 71 LPPRV 75
PPR+
Sbjct: 391 KPPRI 405
>TC207157
Length = 826
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +3
Query: 13 GDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRPLP 72
G+KVE+ +G + A I+S + Y ++Y S E + K +RP P
Sbjct: 192 GNKVEIRGNADGLTVEWRCARIISG-DGHTYSVQYD--CSSTTSGASTERVSRKAIRPCP 362
Query: 73 PRVHNPWRFELNQKVDVFDNDGWWVGEI 100
P + N V+V++ W V +
Sbjct: 363 PLIKGIESQAANDHVEVYNAGSWRVATV 446
>TC216940 weakly similar to GB|AAP37755.1|30725466|BT008396 At1g68580
{Arabidopsis thaliana;} , partial (11%)
Length = 1049
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/58 (25%), Positives = 25/58 (42%)
Frame = +2
Query: 87 VDVFDNDGWWVGEIASEKILMEKSYYYSVYFDYCHQTIYYPCDQIRVHQELVWGDWIF 144
VD + +DGWW G + + + VYF + +R Q+ V +W+F
Sbjct: 11 VDAWWHDGWWEGIVVQK----DSESNCHVYFPGEKVVSVFGPGNLRESQDWVGNEWVF 172
>CA801851 weakly similar to GP|20466528|gb G2484-1 protein {Arabidopsis
thaliana}, partial (8%)
Length = 445
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 11 KVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYV 44
K G VEV EEGF ++F A I++ + YV
Sbjct: 151 KEGLLVEVFKDEEGFKAAWFSANILTLRDDKAYV 252
>AI960372
Length = 379
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 96 WVGEIASEKILMEKSYYYSVYFDYCHQTIYYPCDQ 130
+ G ++ M + +Y+ YC+ TI YP Q
Sbjct: 247 YAGVTPMRRLTMRRFRQRYMYYSYCYDTIRYPVPQ 351
>BM885811
Length = 422
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = +2
Query: 72 PPRVHNPWRFELNQKVDVFDNDGW 95
PPRV +P + ++ F DGW
Sbjct: 326 PPRVSSPTHYSAKVALEEFTRDGW 397
>TC223171 similar to UP|Q8RW43 (Q8RW43) TCP1 protein, partial (9%)
Length = 411
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (49%), Gaps = 6/32 (18%)
Frame = -1
Query: 111 YYYSVYFDYCHQTIYY------PCDQIRVHQE 136
YYY Y+DY + YY PC Q R ++
Sbjct: 372 YYYYYYYDYYYYDYYYYYYSTLPCYQRRFQRK 277
>TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
(83%)
Length = 1070
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 50 LLKDDESELLMETLFPKDLRPLPPRV 75
+LKDD+ ++ET KDL+PL RV
Sbjct: 563 ILKDDDIVGILETDEVKDLKPLNDRV 640
>BE023079
Length = 419
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/84 (30%), Positives = 43/84 (50%), Gaps = 14/84 (16%)
Frame = +1
Query: 2 RPPVKRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRY-----KNLLKDDES 56
R V+RV+ DK+ CS E+G + S + +++ ESG+ I Y ++ K+ +
Sbjct: 124 RSIVRRVEK---DKLSRCS-EDGEI-SVSKDALLAFSESGRIFIHYLSATANDICKESKR 288
Query: 57 EL---------LMETLFPKDLRPL 71
++ L ET FP+ LRPL
Sbjct: 289 QIINVEDVFKALEETEFPEFLRPL 360
>TC203993 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
(79%)
Length = 783
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 50 LLKDDESELLMETLFPKDLRPLPPRV 75
+LKDD+ ++ET KDL+PL RV
Sbjct: 283 ILKDDDIVGILETDEVKDLKPLNDRV 360
>TC229969 UP|Q8LGT9 (Q8LGT9) Phosphoglycerate mutase-like protein, complete
Length = 1133
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +3
Query: 33 TIVSCLESGKYVIRYKNLL 51
T +SC+ G+YVI Y LL
Sbjct: 1029 TSISCVNCGRYVISYSRLL 1085
>TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragment), partial
(9%)
Length = 1259
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 46 RYKNLLKDDESELLMETLFPKDLRPLPPRVHNPWRFELN 84
RYK+ ++ S +LM K RPL P H W LN
Sbjct: 522 RYKDCMRAHASHILMPRNLLKWRRPL-PLSHGHWLLRLN 635
>TC204759 similar to UP|XT30_ARATH (Q38908) Probable xyloglucan
endotransglucosylase/hydrolase protein 30 precursor
(At-XTH30) (XTH-30) , partial (76%)
Length = 1213
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/35 (25%), Positives = 17/35 (47%)
Frame = +3
Query: 96 WVGEIASEKILMEKSYYYSVYFDYCHQTIYYPCDQ 130
+ G ++ M + +Y+ YC+ T+ YP Q
Sbjct: 816 YAGVTPMRRLTMRRFRQRYMYYSYCYDTLRYPVPQ 920
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.141 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,208,578
Number of Sequences: 63676
Number of extensions: 114257
Number of successful extensions: 754
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146941.12