TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146910.6 - phase: 0 
         (385 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             270  8e-73
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   270  8e-73
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ...   194  4e-50
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   176  2e-44
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara...   166  2e-41
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   159  3e-39
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr...   133  2e-31
BU764568                                                              107  3e-31
BU548243                                                              125  2e-29
BU549979                                                              122  4e-28
CO982036                                                              122  4e-28
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...    96  4e-28
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos...   119  2e-27
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {...    70  2e-27
BM086359                                                              119  3e-27
TC232995                                                              116  1e-26
BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sat...   114  7e-26
TC213445                                                               76  4e-25
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa...    87  1e-24
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)       108  3e-24

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  270 bits (690), Expect = 8e-73
 Identities = 139/368 (37%), Positives = 214/368 (57%)
 Frame = +1

Query: 12   PHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVD 71
            P  V +L K+LYGLKQA R WYE+L+ FL   GY     D TLF+K+    + +  +YVD
Sbjct: 3610 PDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVD 3789

Query: 72   DIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNK 131
            DIV  G   + ++     + + F +  +G L +FLGL+V      I + Q +Y  +++ K
Sbjct: 3790 DIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKK 3969

Query: 132  TGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQF 191
             G         P     +L +D++   VD S YR+++G LLYLT++RPDI++ V    ++
Sbjct: 3970 FGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARY 4149

Query: 192  LDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCF 251
              +P  +H     ++L+Y+  +   G+ +   S+  L+GY DADW G  D R+S +G CF
Sbjct: 4150 QANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCF 4329

Query: 252  FIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDS 311
            ++G +L+SW SKKQ  VS S++EAEY A  ++  +L W+  +L + NV    V  L CD+
Sbjct: 4330 YLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDN 4506

Query: 312  QSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFN 371
             SA++I+ NPV H RTKH+DI  H +R+ +   ++ L  + ++EQIADI TKAL    F 
Sbjct: 4507 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFE 4686

Query: 372  HLIAKLSL 379
             L  KL +
Sbjct: 4687 KLRGKLGI 4710


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  270 bits (690), Expect = 8e-73
 Identities = 139/368 (37%), Positives = 213/368 (57%)
 Frame = +1

Query: 12   PHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVD 71
            P  V +L K+LYGLKQA R WYE+L+ FL   GY     D TLF+K+    + +  +YVD
Sbjct: 3613 PDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVD 3792

Query: 72   DIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNK 131
            DIV  G   + ++     + + F +  +G L +FLGL+V      I + Q +Y  +++ K
Sbjct: 3793 DIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKK 3972

Query: 132  TGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQF 191
             G         P     +L +D++   VD S YR+++G LLYLT++RPDI++ V    ++
Sbjct: 3973 FGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARY 4152

Query: 192  LDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCF 251
              +P  +H     ++L+Y+  +   G+ +   S   L+GY DADW G  D R+S +G CF
Sbjct: 4153 QANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCF 4332

Query: 252  FIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDS 311
            ++G +L+SW SKKQ  VS S++EAEY A  ++  +L W+  +L + NV    V  L CD+
Sbjct: 4333 YLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVE-QDVMTLYCDN 4509

Query: 312  QSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFN 371
             SA++I+ NPV H RTKH+DI  H +R+ +   ++ L  + ++EQIADI TKAL    F 
Sbjct: 4510 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFE 4689

Query: 372  HLIAKLSL 379
             L  KL +
Sbjct: 4690 KLRGKLGI 4713


>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial
           (16%)
          Length = 662

 Score =  194 bits (494), Expect = 4e-50
 Identities = 104/188 (55%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
 Frame = +3

Query: 202 AAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWK 261
           AA +VL+YLK  P  GL F R+S + +LG+SDADW  C D+ +SIT YCFF+G SL+SWK
Sbjct: 18  AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197

Query: 262 SKKQQTVSR--SSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALH-IA 318
           +KKQ TVSR  SSSEA+YRAL + TCELQWL YLL DL+VT      + CD+QSAL  + 
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHVT-----LIYCDNQSALQ*LP 362

Query: 319 SNPVFHERTKHLDIDCHVVREKLQSGLME-LFPISSQEQIADILTKALHPASFNHLIAKL 377
              ++H +   L+IDCH+VREK Q GLM  L P+SS  Q+ADI TKAL P  F+  ++KL
Sbjct: 363 IKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKL 533

Query: 378 SLLNIYQP 385
            L +I+ P
Sbjct: 534 GLSDIFLP 557


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
           partial (30%)
          Length = 687

 Score =  176 bits (446), Expect = 2e-44
 Identities = 87/158 (55%), Positives = 107/158 (67%)
 Frame = +2

Query: 228 LLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCEL 287
           L GY DADW GCP  RRS +GYC FIG +LVSWKSKKQ  V+RSS+EAEYR++A  TCEL
Sbjct: 17  LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196

Query: 288 QWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLME 347
            W+   L +L         L CD+Q+ALHIASNPVFHERTKH++IDCH +REKL S  + 
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376

Query: 348 LFPISSQEQIADILTKALHPASFNHLIAKLSLLNIYQP 385
              I S +Q  DILTK+L       + +KL   ++Y P
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAP 490


>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
           thaliana}, partial (18%)
          Length = 421

 Score =  166 bits (420), Expect = 2e-41
 Identities = 84/139 (60%), Positives = 100/139 (71%)
 Frame = -2

Query: 20  KSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDIVLAGND 79
           KSLYGLKQASRKWYEKL++ L+  GY    SD +LF     +T T LLVYVDDI+LAG+ 
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241

Query: 80  LDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKP 139
           +DE   IKN L   F IK+LG LK+FLGLEVAHS  GITI Q++YCLDLL  +G LGCKP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61

Query: 140 SSIPMDPSQRLHRDDSEPY 158
           +S P+D S +LH     PY
Sbjct: 60  ASTPLDTSIKLHSAAGTPY 4


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein,
           partial (7%)
          Length = 804

 Score =  159 bits (401), Expect = 3e-39
 Identities = 77/222 (34%), Positives = 136/222 (60%), Gaps = 3/222 (1%)
 Frame = +1

Query: 159 VDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGL 218
           VD +E+R L+G L YL ++RP+I F V  + +F+  P  +H +AA +VLR +K + G+G+
Sbjct: 7   VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186

Query: 219 FFP---RDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEA 275
            FP   +     LLGY+D+DW   P+  +S  GY F    + V+  SKKQ  ++ S+ EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366

Query: 276 EYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCH 335
           EY A +   C+  W++ LL +L +   K   L+ D++SA+++A +P  H R+KH+++  H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546

Query: 336 VVREKLQSGLMELFPISSQEQIADILTKALHPASFNHLIAKL 377
            +R+++  G + +    ++EQ+AD++TK +  + F  + ++L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672


>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
           Hopscotch polyprotein, partial (7%)
          Length = 1446

 Score =  133 bits (334), Expect = 2e-31
 Identities = 63/109 (57%), Positives = 79/109 (71%)
 Frame = +2

Query: 233 DADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVY 292
           DA+W   P  R S  GYC  IG++LV WKS K   V+RSS+EAEY+A+  ATCEL W+  
Sbjct: 8   DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187

Query: 293 LLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKL 341
           LL +L    ++   L CD+Q+ALHIASNPVFHERTKH++IDCH VREK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334


>BU764568 
          Length = 420

 Score =  107 bits (267), Expect(2) = 3e-31
 Identities = 50/84 (59%), Positives = 63/84 (74%)
 Frame = +3

Query: 247 TGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPA 306
           +GYC  IG +L+SWKSKKQ  V++SS+EAEYRA+A  TCEL WL  LL +L         
Sbjct: 168 SGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMT 347

Query: 307 LVCDSQSALHIASNPVFHERTKHL 330
           L+CD+Q+ALHIASNP+FH RTKH+
Sbjct: 348 LICDNQAALHIASNPIFH*RTKHI 419



 Score = 45.8 bits (107), Expect(2) = 3e-31
 Identities = 22/54 (40%), Positives = 31/54 (56%)
 Frame = +1

Query: 190 QFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTR 243
           QFL+SP   H+ A   +L+  K++PG GL +       ++GYSDAD  G P  R
Sbjct: 4   QFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDR 165


>BU548243 
          Length = 599

 Score =  125 bits (315), Expect = 2e-29
 Identities = 65/147 (44%), Positives = 95/147 (64%)
 Frame = -1

Query: 233 DADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVY 292
           DA W    D  RS  G   F+G +L+SW S+KQQ  ++SS+EAEYR++A  + EL W+  
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408

Query: 293 LLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPIS 352
           LL +L +  +  P ++CD++SA+ IA N VFH RTKH++ID   V EK+ S  +++F I 
Sbjct: 407 LLMELQIPFTP-PVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231

Query: 353 SQEQIADILTKALHPASFNHLIAKLSL 379
           + +Q A ILTK L  A F  L +KL++
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150


>BU549979 
          Length = 615

 Score =  122 bits (305), Expect = 4e-28
 Identities = 64/194 (32%), Positives = 112/194 (56%), Gaps = 2/194 (1%)
 Frame = -1

Query: 188 LCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSIT 247
           L ++  +P   H+K A KV+RYL+ +    L + + + L ++GYSD+D+ GC D+RRS +
Sbjct: 612 LGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTS 433

Query: 248 GYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNV--TCSKVP 305
           GY F +   +VSW+S KQ  ++ S+ E E+     AT    WL   ++ L V  + S+  
Sbjct: 432 GYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPL 253

Query: 306 ALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKAL 365
            L CD+ +A+ +A N     R+KH+DI   V+RE+++   + +  ++++  I D LTK +
Sbjct: 252 KLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGM 73

Query: 366 HPASFNHLIAKLSL 379
            P +F   + ++ L
Sbjct: 72  TPKNFKDHVVRMEL 31


>CO982036 
          Length = 674

 Score =  122 bits (305), Expect = 4e-28
 Identities = 73/210 (34%), Positives = 116/210 (54%), Gaps = 3/210 (1%)
 Frame = -2

Query: 60  TSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITI 119
           T  +TV L+   DI++ G+    IQ + + L++ F +K LG L +F+ +EV  S   +  
Sbjct: 667 THILTVYLLVYVDIIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVK-SMPDLLF 491

Query: 120 CQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRP 179
             +    ++  +      +P S PM  + +L + DS+ +   + YR++VG L Y T  RP
Sbjct: 490 SLRTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRP 311

Query: 180 DISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGL-FFPRDSS--LHLLGYSDADW 236
           +ISF V ++CQF+ +P  +H+    ++LRYLK S   GL   P  SS  L + G+ DADW
Sbjct: 310 EISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADW 131

Query: 237 GGCPDTRRSITGYCFFIGKSLVSWKSKKQQ 266
               D +RS +G   F+G +L+SW   KQQ
Sbjct: 130 ASAVDDKRSTSGAAVFLGPNLISWWXXKQQ 41


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score = 95.5 bits (236), Expect(2) = 4e-28
 Identities = 58/184 (31%), Positives = 87/184 (46%)
 Frame = +3

Query: 62  TITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQ 121
           T  ++ +YVDDI+         +     + + F     G LKF LGL++     GI I Q
Sbjct: 483 TFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQ 662

Query: 122 QQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDI 181
           ++Y    L +      KP + PM  S  + +D+   +    EY  ++  L YLTS+RPDI
Sbjct: 663 EKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDI 842

Query: 182 SFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPD 241
            F V    +F   P  +H  A  ++LRYL  +    L+F + S   LLGY D  + G   
Sbjct: 843 VFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKV 1022

Query: 242 TRRS 245
            R+S
Sbjct: 1023ERKS 1034



 Score = 47.4 bits (111), Expect(2) = 4e-28
 Identities = 21/36 (58%), Positives = 26/36 (71%)
 Frame = +2

Query: 22  LYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIK 57
           +YGLKQA R WYE+LS FL+S G+    +DP LF K
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRK 469


>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
           (21%)
          Length = 421

 Score =  119 bits (299), Expect = 2e-27
 Identities = 61/118 (51%), Positives = 77/118 (64%)
 Frame = +2

Query: 66  LLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYC 125
           L+VYVDDI++   D  +I  +K  L N F  KDL  LK+FLG+EVA S  G+ I Q++Y 
Sbjct: 65  LMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIEVAQSGDGVVISQRKYA 244

Query: 126 LDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISF 183
           LD+L +TG   C+    PMDP+ +L    SE Y D   YR LVGKL+YLT TRPDISF
Sbjct: 245 LDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRRLVGKLIYLTITRPDISF 418


>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (19%)
          Length = 437

 Score = 70.1 bits (170), Expect(2) = 2e-27
 Identities = 33/71 (46%), Positives = 45/71 (62%)
 Frame = +1

Query: 129 LNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQL 188
           +  TG   C+P    MDP+++L  +  +PY D+  YR LVGKL+YLT TRP+ISF V  +
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399

Query: 189 CQFLDSPTATH 199
            QF+ SP   H
Sbjct: 400 SQFMQSPHNDH 432



 Score = 70.1 bits (170), Expect(2) = 2e-27
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = +2

Query: 59  TTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGIT 118
           ++S    L+VYVDDIV+ GND  +I  +K  L + F  KDLG  ++FLG+EVA S  GI 
Sbjct: 20  SSSRCVYLMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGII 199

Query: 119 ICQQQYCLDLL 129
           I Q++Y LD+L
Sbjct: 200 ISQRKYALDIL 232


>BM086359 
          Length = 427

 Score =  119 bits (297), Expect = 3e-27
 Identities = 62/140 (44%), Positives = 84/140 (59%)
 Frame = +1

Query: 106 LGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYR 165
           LG++VA S+ GI I Q +Y LD+L +TG L C PS+ PMDP+ +L     E   D     
Sbjct: 1   LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180

Query: 166 ALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSS 225
            LVG+L YLT TR DI+F V  L QFL  PT + + A  ++LRY+K +PG GL +    +
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360

Query: 226 LHLLGYSDADWGGCPDTRRS 245
             ++ Y DADW G P  + S
Sbjct: 361 GKVVCYFDADWPGSPSDKSS 420


>TC232995 
          Length = 1009

 Score =  116 bits (291), Expect = 1e-26
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 1/170 (0%)
 Frame = +2

Query: 4   PQGLE-GIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTST 62
           P G E    P+ V KL K+LYGLKQA R WYE+LS+FL+   ++    D TLFIKR  + 
Sbjct: 11  PPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHND 190

Query: 63  ITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQ 122
           I ++ +YVDDI+    +    +     + + F +  +G LK+FLGL++  +  GI I Q 
Sbjct: 191 ILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQS 370

Query: 123 QYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLL 172
           +YC +L+ + G    K  S PM  +  L +D+S   +D  +YR  +G+++
Sbjct: 371 KYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520


>BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (5%)
          Length = 327

 Score =  114 bits (285), Expect = 7e-26
 Identities = 57/107 (53%), Positives = 71/107 (66%)
 Frame = +2

Query: 77  GNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTLG 136
           GND  +I  +K  L + F  KDLG LK+FLG+EVA S   + I Q++Y LD+L +TG   
Sbjct: 5   GNDATKIVQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGVDVVISQRKYALDILEETGMQN 184

Query: 137 CKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISF 183
           C+P   PMDP+ +L  D SE Y D   YR LVGKL+YLT TRPDISF
Sbjct: 185 CRPVDSPMDPNLKLMADQSEIYHDPERYRRLVGKLIYLTITRPDISF 325


>TC213445 
          Length = 705

 Score = 76.3 bits (186), Expect(2) = 4e-25
 Identities = 37/100 (37%), Positives = 60/100 (60%)
 Frame = +1

Query: 239 CPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLN 298
           C   R S +  C FIG +LVSW SKKQ +V  S++EAEY +  +   ++ W+   L D  
Sbjct: 397 CKTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYG 576

Query: 299 VTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVR 338
           +    +P + CD+ SA++++ N + + RTKH++I  H +R
Sbjct: 577 LKLDHIP-IRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693



 Score = 56.6 bits (135), Expect(2) = 4e-25
 Identities = 25/69 (36%), Positives = 44/69 (63%)
 Frame = +2

Query: 166 ALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSS 225
           A++   LYL+++RP I F+V    ++  +P  +H     +++RYL      GL++P++SS
Sbjct: 194 AMIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSS 373

Query: 226 LHLLGYSDA 234
            +L+GYSDA
Sbjct: 374 YNLVGYSDA 400


>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
          Length = 406

 Score = 86.7 bits (213), Expect(2) = 1e-24
 Identities = 46/85 (54%), Positives = 57/85 (66%)
 Frame = +3

Query: 230 GYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQW 289
           GY+DADW G    RRS +GYC F+G +LVS  SKKQ  V+RSS+EAE+RALA   CE  W
Sbjct: 153 GYTDADWAGSVTDRRSTSGYCTFVGGNLVS*-SKKQSVVARSSAEAEFRALAHGICETLW 329

Query: 290 LVYLLTDLNVTCSKVPALVCDSQSA 314
           +  LL +L V  S    L CD++SA
Sbjct: 330 VKKLLQELKVHSSPPIKLYCDNKSA 404



 Score = 44.3 bits (103), Expect(2) = 1e-24
 Identities = 19/39 (48%), Positives = 27/39 (68%)
 Frame = +1

Query: 181 ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLF 219
           I+F V  + QF+ +P   H +AA ++LRYLK SPG GL+
Sbjct: 7   IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGLY 123


>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
          Length = 493

 Score =  108 bits (271), Expect = 3e-24
 Identities = 57/141 (40%), Positives = 85/141 (59%)
 Frame = +3

Query: 241 DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
           D R+S TG+ FF+G +  +W SKKQ  V+ S+ EAEY A  +  C   WL  LL +L + 
Sbjct: 9   DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188

Query: 301 CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
             +   +  D++SAL +A NPVFHE++KH+D   H +RE ++   ++L  + SQ+Q ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368

Query: 361 LTKALHPASFNHLIAKLSLLN 381
            TK L   +F  L + L + N
Sbjct: 369 FTKPLKLETFVKLRSMLGVTN 431


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,734,612
Number of Sequences: 63676
Number of extensions: 275402
Number of successful extensions: 1382
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of query: 385
length of database: 12,639,632
effective HSP length: 99
effective length of query: 286
effective length of database: 6,335,708
effective search space: 1812012488
effective search space used: 1812012488
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)