BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.5 - phase: 0 /pseudo
(470 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211201 349 e-106
CB063410 GP|13274996|em soybean protox-1 {Glycine max}, partial ... 38 0.009
TC217354 similar to UP|Q9SBB5 (Q9SBB5) CTF2A, partial (50%) 36 0.042
TC219516 similar to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2 ... 32 0.47
BU761145 32 0.47
BE058755 31 1.0
TC226976 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partia... 31 1.4
TC226977 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partia... 31 1.4
TC217762 similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine ox... 30 1.8
TC205090 similar to UP|O04237 (O04237) Transcription factor, par... 30 1.8
TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%) 30 2.3
TC220041 weakly similar to UP|Q6NLT6 (Q6NLT6) At1g34010, partial... 30 2.3
TC234195 similar to UP|Q89XA5 (Q89XA5) Bll0409 protein, partial ... 30 2.3
TC217572 homologue to UP|V724_ARATH (O23429) Vesicle-associated ... 30 2.3
TC210216 homologue to UP|Q70KC5 (Q70KC5) MYB transcription facto... 30 3.0
TC209134 similar to UP|Q9M9Y8 (Q9M9Y8) F4H5.10 protein, partial ... 29 5.2
TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete 29 5.2
TC209453 similar to UP|O81335 (O81335) Geranylgeranyl hydrogenas... 28 6.7
TC227880 similar to UP|Q86UK7 (Q86UK7) Zinc finger protein 598, ... 28 6.7
>TC211201
Length = 779
Score = 349 bits (895), Expect(2) = e-106
Identities = 175/226 (77%), Positives = 192/226 (84%)
Frame = +3
Query: 140 LYEYCAKHDIPHEQTGKLIVATRSSEIPKLSVILNHGIQNGVDGLKMMDGVDAMKMEPEL 199
LYEYC+KHDIPH+Q GKLIVATRSSEIPKL+ ILN GIQNGVDGLK++DGV+AMKMEPEL
Sbjct: 3 LYEYCSKHDIPHKQIGKLIVATRSSEIPKLNDILNCGIQNGVDGLKIVDGVEAMKMEPEL 182
Query: 200 QCVKAILSPLSGIVDSHSLMLSLVLHIDRNINPMLVQGEAENHGATFTYNSTVIGGHMEG 259
QCVKAILSPL+GIVDSHSLMLSLV GEAEN G TFTYNSTVIGGH+EG
Sbjct: 183 QCVKAILSPLTGIVDSHSLMLSLV-------------GEAENQGTTFTYNSTVIGGHLEG 323
Query: 260 NEICLHVSETKSLKEWNGKSSLQPELVLIPKLVVNSAGLSALALAKRFTGLENKVIPPAY 319
+EICLHV+ET L EW G S LQPEL+LIPKLVVNS GLS+ LAKRF G ++ V+PPAY
Sbjct: 324 SEICLHVTETDRLTEWKGTSILQPELLLIPKLVVNSTGLSSPVLAKRFNGPKSGVVPPAY 503
Query: 320 YARGCYFTLSNTKASPFRHLIYPIPEDGGLGVHVTLDLNGQVKFGP 365
YARGCYFTLSNTK SPFR LIYPIPEDGG+GVHVT+DLNGQVK P
Sbjct: 504 YARGCYFTLSNTKNSPFRRLIYPIPEDGGIGVHVTIDLNGQVKVWP 641
Score = 53.9 bits (128), Expect(2) = e-106
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2
Query: 378 SFQNKFDYSVQANRAEKFYPEIRKYYPNLKDGS 410
+F+ SV ANRAE+FYPEIRKYYPNLKDGS
Sbjct: 680 AFRISMTISVNANRAERFYPEIRKYYPNLKDGS 778
Score = 53.1 bits (126), Expect = 3e-07
Identities = 24/43 (55%), Positives = 29/43 (66%)
Frame = +1
Query: 362 KFGPDVEWIDGVDDISSFQNKFDYSVQANRAEKFYPEIRKYYP 404
KFGP+VEWID VDDISSFQNK+DY + + F +K P
Sbjct: 631 KFGPNVEWIDSVDDISSFQNKYDYFSKCKSS*AFLSRDKKVLP 759
>CB063410 GP|13274996|em soybean protox-1 {Glycine max}, partial (18%)
Length = 386
Score = 38.1 bits (87), Expect = 0.009
Identities = 28/78 (35%), Positives = 40/78 (50%), Gaps = 15/78 (19%)
Frame = +3
Query: 39 NIRSTTQNDTNTTTSYPVSR-----------ETTTSYSVPRER--VDCVVIGAGVVGIAV 85
++ S T T+ T +P SR E+T S R+ VDCVV+G GV G+ +
Sbjct: 147 SLHSPTSFFTSPTRKFPRSRPNPILRCSIAEESTASPPKTRDSAPVDCVVVGGGVSGLCI 326
Query: 86 ARALALK--GREVIVIES 101
A+ALA K V+V E+
Sbjct: 327 AQALATKHANANVVVTEA 380
>TC217354 similar to UP|Q9SBB5 (Q9SBB5) CTF2A, partial (50%)
Length = 859
Score = 35.8 bits (81), Expect = 0.042
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Frame = +3
Query: 40 IRSTTQNDTNTTTSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIVI 99
++S T T T + + + V E+V VV+GAG+ G+A A +L G +V+
Sbjct: 24 LKSHTHTKTLFTRRSYKAIKAQSQTDVREEQV--VVVGAGIAGLATALSLHRLGVRSLVL 197
Query: 100 ESAPSFGTGTSS----RNSEVVHAGIYYPHHSLKAIF---------CVKGREMLYEYCAK 146
E A S TG +S +N V I + L+ F V GRE L + K
Sbjct: 198 EQAQSLRTGGTSLTLFKNGWRVLDAIGVA-NDLRTQFLEIQGMVVKSVDGRE-LRAFNFK 371
Query: 147 HDIPHEQT----GKLIVATRSSEIPKLSVILNHGIQ------NGVDGLKMMDG 189
+ P ++ ++++ T +S++P+ SV + +Q NG L+++DG
Sbjct: 372 QEDPSQEVRAVERRVLLETLASQLPRDSVQYSSQLQRIEASPNGDTLLELVDG 530
>TC219516 similar to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2 , partial
(14%)
Length = 495
Score = 32.3 bits (72), Expect = 0.47
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +1
Query: 72 DCVVIGAGVVGIAVARALALKGREVIVIE 100
D +++GAGV G A+A L GR V VIE
Sbjct: 289 DIIIVGAGVAGAALAYTLGKDGRRVHVIE 375
>BU761145
Length = 450
Score = 32.3 bits (72), Expect = 0.47
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 72 DCVVIGAGVVGIAVARALALKGREVIVIE 100
D +V+GAGV G A+A LA GR V VIE
Sbjct: 122 DVIVVGAGVAGSALAYTLAKDGRCVHVIE 208
>BE058755
Length = 411
Score = 31.2 bits (69), Expect = 1.0
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +3
Query: 43 TTQNDTNTTTSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIVIESA 102
T ++ + + S P+S + P + VDC V+R+L++ GR V+++ S
Sbjct: 129 TPASNLSPSVSTPISARAYNEQTKPHKDVDC---------SKVSRSLSVPGRNVVIVRSV 281
Query: 103 PSFGTGTSSRNSE 115
SF T + E
Sbjct: 282 -SFSTRSEQEQQE 317
>TC226976 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (92%)
Length = 2336
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = +1
Query: 74 VVIGAGVVGIAVARALALKGREVIVIES 101
+VIG G+ GIA ARAL +VI++ES
Sbjct: 379 IVIGGGMAGIAAARALQDASFQVILLES 462
>TC226977 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (14%)
Length = 629
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = +2
Query: 74 VVIGAGVVGIAVARALALKGREVIVIES 101
+VIG G+ GIA ARAL +VI++ES
Sbjct: 431 IVIGGGMAGIAAARALQDASFQVILLES 514
>TC217762 similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine oxidase ,
partial (58%)
Length = 1312
Score = 30.4 bits (67), Expect = 1.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 72 DCVVIGAGVVGIAVARALALKGREVIVIESAPSFGTGTSSRNSEVVHAGIYYPHH 126
D ++IGAGV+G + A +G + +++E F S + E + YPHH
Sbjct: 34 DVIIIGAGVMGSSTAYHATKRGLKTLLLEQF-DFLHHCGSSHGESRTIRLTYPHH 195
>TC205090 similar to UP|O04237 (O04237) Transcription factor, partial (36%)
Length = 614
Score = 30.4 bits (67), Expect = 1.8
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = -2
Query: 12 FKSSSSSTRTRDHVHMKWNNPFNNWVRNIRSTTQNDTNTTTSYPVSRETTTSY-SVPRER 70
F+ SSS+ T W + F N+ STT T TTT P TTS+ +PR
Sbjct: 361 FEFISSSSPTVVFKCSSWASFFTNFTDGKTSTTTATTTTTTVGPTRSTITTSF*VIPRIP 182
Query: 71 VDCVVIGAGVVGIAVARALALKGREVIVIESAPSFGTGTSSRNSEVVHAGIYYPHHSL 128
+I G + + + A + S + TS + V I+ HSL
Sbjct: 181 FKRSLISRG**VVIIGKIAAKAATTTTTTXKSSSTSSXTS---TAAVRXFIFSLPHSL 17
>TC226131 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (86%)
Length = 2250
Score = 30.0 bits (66), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 74 VVIGAGVVGIAVARALALKGREVIVIESAPSFG 106
+VIGAG+ G+A AR+L +V V+ES G
Sbjct: 173 IVIGAGISGLAAARSLYDASFKVTVLESRDRLG 271
>TC220041 weakly similar to UP|Q6NLT6 (Q6NLT6) At1g34010, partial (17%)
Length = 1236
Score = 30.0 bits (66), Expect = 2.3
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = -3
Query: 205 ILSPLSGIVDSHSLMLSLVLHIDRNINPMLVQG-------EAENHGATFTYNSTVIGGHM 257
I+SP +++ M+S +LH +N+NP L+ +Y+ST + G
Sbjct: 760 IMSPDPAELETIMKMVSTLLHRCKNLNPHLLNH*HHLAHIPTPQQACFHSYHSTALSGES 581
Query: 258 EGNEICLHVSETKSLKEWN 276
+ H+SE ++ K WN
Sbjct: 580 FHSFWTCHLSE-EATKNWN 527
>TC234195 similar to UP|Q89XA5 (Q89XA5) Bll0409 protein, partial (3%)
Length = 420
Score = 30.0 bits (66), Expect = 2.3
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 51 TTSYPVSR-ETTTSYSVPRERVDCVVIGAGVVGIAVAR-ALALKGREVIVIESA 102
T+ P S+ + S S + D VV+GAGV+G+ +AR L V V++ A
Sbjct: 1 TSKTPTSKGRFSVSCSSSSQAYDVVVVGAGVIGLTIARHFLVSSDLSVAVVDKA 162
>TC217572 homologue to UP|V724_ARATH (O23429) Vesicle-associated membrane
protein 724 (AtVAMP724) (SYBL1-like protein), complete
Length = 1012
Score = 30.0 bits (66), Expect = 2.3
Identities = 22/89 (24%), Positives = 37/89 (40%)
Frame = +1
Query: 10 EQFKSSSSSTRTRDHVHMKWNNPFNNWVRNIRSTTQNDTNTTTSYPVSRETTTSYSVPRE 69
EQF S S R F NW ++ + D + S+ RE + V
Sbjct: 763 EQFLKSFSKNLLR-------RGEFGNWRKSFLPSLFVDNHIRYSWKFLRERRSGVFVMYH 921
Query: 70 RVDCVVIGAGVVGIAVARALALKGREVIV 98
+DC+V+ +V I + L K R++++
Sbjct: 922 MLDCLVLSNNIVVICFSFLLYFKYRKMLL 1008
>TC210216 homologue to UP|Q70KC5 (Q70KC5) MYB transcription factor, partial
(33%)
Length = 1252
Score = 29.6 bits (65), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = +3
Query: 20 RTRDHVHMKWNNPFNNWVRNIRSTTQNDTNTTTSYPVSRETTTSYSVPRER 70
RT + + WN+ +RN+ ST T TT+ P S + TS S P +
Sbjct: 252 RTDNEIKNFWNSTIKKRLRNMSST----TTTTSPSPSSNASETSISEPSNK 392
>TC209134 similar to UP|Q9M9Y8 (Q9M9Y8) F4H5.10 protein, partial (44%)
Length = 1122
Score = 28.9 bits (63), Expect = 5.2
Identities = 28/106 (26%), Positives = 50/106 (46%), Gaps = 6/106 (5%)
Frame = +1
Query: 185 KMMDGVDAMKMEPELQCVKAILSPLSGIVDSHSLMLSLVLHIDRNINPMLVQGE----AE 240
K++ GV K E Q V + +P + H + + VL D + + +++ E
Sbjct: 91 KLLKGVPLPKEEENFQKVY-VKAP--SFLSIHMGVKAEVLPPDTDCHHFVLESNWSKLEE 261
Query: 241 NHGATFTYNSTVIGGHM--EGNEICLHVSETKSLKEWNGKSSLQPE 284
+G+ F TV+ + EG I LH+ T S+++W G S ++ E
Sbjct: 262 PYGSIFLSIPTVLDSSLAPEGRHI-LHIFTTSSMEDWEGLSRVEYE 396
>TC209376 UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase, complete
Length = 1733
Score = 28.9 bits (63), Expect = 5.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 52 TSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIVIES 101
T P ++ + PR V+GAGV G+A A L G +V V E+
Sbjct: 6 TPQPPRMASSATDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEA 155
>TC209453 similar to UP|O81335 (O81335) Geranylgeranyl hydrogenase , partial
(36%)
Length = 745
Score = 28.5 bits (62), Expect = 6.7
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 48 TNTTTSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIVIESAP 103
T+ Y S S S+ ++ VIG G G + A ALA G E + E P
Sbjct: 142 TSKPKPYLKSFTIKASKSISGRKLRAAVIGGGPAGSSAAEALASGGVETFLFERNP 309
>TC227880 similar to UP|Q86UK7 (Q86UK7) Zinc finger protein 598, partial (3%)
Length = 1079
Score = 28.5 bits (62), Expect = 6.7
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = +2
Query: 348 GLGVHVTLDLNGQVKFGPDVEWIDGVDDISSFQNKFDYSVQANRAEKFYPEIRK 401
G G HV + G + WID + DIS+F++ F+ N +E F ++K
Sbjct: 578 GSGGHVLVQFYGNLPSA----WIDPMTDISTFEDSFE-DKSNNPSEDFQQALKK 724
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,021,465
Number of Sequences: 63676
Number of extensions: 296409
Number of successful extensions: 1524
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of query: 470
length of database: 12,639,632
effective HSP length: 101
effective length of query: 369
effective length of database: 6,208,356
effective search space: 2290883364
effective search space used: 2290883364
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146910.5