BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.2 + phase: 1 /pseudo/partial
(757 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protei... 45 2e-04
TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing prote... 40 0.003
TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fr... 35 0.095
TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (C... 32 1.4
TC223780 similar to UP|Q72KQ8 (Q72KQ8) Phosphoribosylamine-glyci... 32 1.4
TC209204 similar to UP|Q8VXU9 (Q8VXU9) AT3g13440/MRP15_7, partia... 31 1.8
TC228681 similar to UP|O04162 (O04162) Dioxygenase, partial (27%) 30 3.0
TC232463 homologue to UP|Q898K1 (Q898K1) Conserved protein, part... 30 5.2
TC203907 similar to UP|Q9FZC2 (Q9FZC2) T1K7.26 protein, partial ... 30 5.2
AI900098 30 5.2
TC231516 similar to UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, parti... 29 6.8
TC225867 similar to UP|O03990 (O03990) RAD23, isoform I, partial... 29 6.8
AW832011 29 8.9
>TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protein 2, partial
(19%)
Length = 1500
Score = 44.7 bits (104), Expect = 2e-04
Identities = 43/217 (19%), Positives = 87/217 (39%), Gaps = 8/217 (3%)
Frame = +1
Query: 301 HYPDVWYDYATWHAKA---GSIDAAIKVFQRSLKALPDSEM--LRYAYAELEESRGAIQA 355
H D+W Y + + ++ A ++F+ ++++ P ++ L YA+LEE G +
Sbjct: 121 HVKDIWVTYLSKFVRRYGKNKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKR 300
Query: 356 AKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASV 415
A K+Y+ + T+ V K + Y +Y+A A+
Sbjct: 301 AMKVYD---------------------QATKAVPNNEKLSM---------YEIYIARAAE 390
Query: 416 AFCLDKDPKMAHNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSSLPLED 475
F + K ++ E+GL L+YA+ L + R +F A
Sbjct: 391 IFGVPKTREIYEQAIESGLPD-KDVKTMCLKYAELEKSLGEIDRARGIFVFASQFADPRS 567
Query: 476 SVEVWKRFVKFEQTYGD---LASMLKVEQRRKEAFGE 509
E W ++ +FE +G+ ML++++ ++ +
Sbjct: 568 DPEFWNKWHEFEVLHGNEDTFREMLRIKRSVSASYSQ 678
>TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing protein RRP5,
partial (10%)
Length = 980
Score = 40.4 bits (93), Expect = 0.003
Identities = 47/189 (24%), Positives = 88/189 (45%), Gaps = 6/189 (3%)
Frame = +3
Query: 323 IKVFQRSLKALPDSEMLRYAYAELEESRGAIQAAKKIYENLLGDSENATA--LAHIQFIR 380
+KVFQR+L+ D + + A + E A ++ + +++ L IQ +
Sbjct: 6 MKVFQRALQ-YNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRRIQSL- 179
Query: 381 FLRRTEGVEPARKYFLDARKSPSCTYHVYVAYASVAFCLDKD---PKMAHNVFEAGLKHF 437
+ +G++P +D R S S H ++ + S L+ P ++FE L+ +
Sbjct: 180 LKQNKDGIQPV----ID-RASLSLPKHKHIKFFSQTAILEFKVGFPDRGRSMFEKILREY 344
Query: 438 MHEPVYILEYADFLIRLNDDQNIRALFERALS-SLPLEDSVEVWKRFVKFEQTYGDLASM 496
Y D I+ D+ I ALFERA+S SLP + ++K+++ +E + GD +
Sbjct: 345 PKRTDLWSVYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDYEMSQGDQERI 524
Query: 497 LKVEQRRKE 505
V+++ E
Sbjct: 525 ESVKRKAIE 551
>TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fragment),
partial (5%)
Length = 1358
Score = 35.4 bits (80), Expect = 0.095
Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Frame = +2
Query: 292 YEQCLMYLYHYPDVWYDYATWHAKAGSIDAAIKVFQRSLKALPDSEMLRYAY-AELEESR 350
YE+C++ +YP+ W Y +GS+ A V R+ + + + + A +E
Sbjct: 659 YERCVIACANYPEYWIRYVLCMEASGSMYLANNVLARATQVFVKRQPEIHIFCARFKEQT 838
Query: 351 GAIQAAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYF-----LDARKSPSCT 405
G I A+ Y+ + ++ A I+ R E +E A + ++ K S T
Sbjct: 839 GDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLEKMEDAFSLYEQAIAIEKGKEHSQT 1018
Query: 406 Y-HVYVAYASVAFCLDKDPKMAHNVFEAGLKHFM 438
++ Y+ + + + A + GL++ +
Sbjct: 1019LPMLFAQYSRFVYLASGNAEKARQILVEGLENVL 1120
>TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
protein-like, partial (30%)
Length = 916
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/47 (29%), Positives = 26/47 (54%)
Frame = +2
Query: 446 EYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFVKFEQTYGD 492
+YA+ L++ RA+FE A++ L+ +WK ++ FE G+
Sbjct: 425 KYAELERSLSETDRARAIFELAIAQPALDMPELLWKAYINFETAEGE 565
>TC223780 similar to UP|Q72KQ8 (Q72KQ8) Phosphoribosylamine-glycine ligase,
partial (5%)
Length = 643
Score = 31.6 bits (70), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 620 LVAFLANLPSVDGPTPNVDIVLSICLQSDLPTGQSVKVGIPSQLPAGPAPATSELSGSSK 679
LV A P + +PN + ++++ P G S+ P Q+ P+PA E +G S+
Sbjct: 587 LVLHHAQHPHPNNSSPNSNPQ*DQSIRTEPPPGPSIAPPGPGQIHLAPSPARQERAGGSR 408
Query: 680 SHP 682
P
Sbjct: 407 QGP 399
>TC209204 similar to UP|Q8VXU9 (Q8VXU9) AT3g13440/MRP15_7, partial (78%)
Length = 1320
Score = 31.2 bits (69), Expect = 1.8
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 126 FLKSLPAAHPQEETHRMT----VVRKVYQRAIITPTHHIEQLWKDYDSFESSVSQKLAKG 181
++ +L A +P E H+M + V QR+ + HI + W+D+D+ E++ + + A G
Sbjct: 868 YMVTLTANNPSEICHQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDT-EANETDQSASG 1044
Query: 182 LIS 184
IS
Sbjct: 1045FIS 1053
>TC228681 similar to UP|O04162 (O04162) Dioxygenase, partial (27%)
Length = 664
Score = 30.4 bits (67), Expect = 3.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 396 LDARKSPSCTYHVYVAYASVAFCLDKDPKMAHNVFEAGLKHFMHEPVY 443
L +K Y + Y ++ FC+DK K ++ L+ F + VY
Sbjct: 599 LKVKKKKKSIYSIQTTYCNLPFCIDKCLKQFSRIYITKLQFFQNVQVY 456
>TC232463 homologue to UP|Q898K1 (Q898K1) Conserved protein, partial (10%)
Length = 533
Score = 29.6 bits (65), Expect = 5.2
Identities = 14/59 (23%), Positives = 31/59 (51%)
Frame = +3
Query: 681 HPVQSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQPLPQDAFRIRQFQKARAGSTSQ 739
HPV+S L + +K+ + + +E DT+++ + P+ ++ R QK + S+ +
Sbjct: 309 HPVKSELDKINVLQKKLERLPRFTEAQEQDTRNISEEEEPEMNYQERTSQKRKYPSSEE 485
>TC203907 similar to UP|Q9FZC2 (Q9FZC2) T1K7.26 protein, partial (15%)
Length = 753
Score = 29.6 bits (65), Expect = 5.2
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Frame = +3
Query: 547 WLVKNTKKVEKSIMLNGTTFIDKGPVASISTTSSKVVYPDTSKMLIYDPKHNPGTGAA-- 604
W VK KK + G F + + S S + V+ L+ + G G +
Sbjct: 216 WCVKKKKKKTRD*FSPGAEFGTRTRLLSASESE*VVLLHQQG--LVTPNRLEMGRGVSAG 389
Query: 605 -GTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQSDLPTGQSVKVGIPSQL 663
G ++ D + + PA A A + P+P VD QS P + + GIP L
Sbjct: 390 GGQSSLDYLFGSGVPASSANGARTQNASAPSPPVD------KQSPAPADKQIPAGIPGSL 551
>AI900098
Length = 208
Score = 29.6 bits (65), Expect = 5.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 97 EETKKAFEFMLSYVGSDIASGPVWMEYIAF 126
+ ++ FE L+YVG+D S P+W +YI +
Sbjct: 104 DTVRRLFERGLAYVGTDHLSFPLWDKYIEY 193
>TC231516 similar to UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (23%)
Length = 835
Score = 29.3 bits (64), Expect = 6.8
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +2
Query: 625 ANLPSVDGPTPNVDIVLSICLQSDLPTGQSVKVGIPSQLPAGPAPA-TSELSGSSKSHPV 683
+N P + P + S QSD P S + S P G + + +S S SS S
Sbjct: 2 SNFPDLASPNLSGTGFFSTLNQSDYPNSTSTQPDHGSLSPEGASKSPSSSCSQSSISSHS 181
Query: 684 QSGLSHMQPGRKQYGKRKQLDSQEEDDTKSVQSQPLPQDA 723
S +S +Q R G ++ + +D+ V + + +A
Sbjct: 182 CSSMSELQQHRTANGAGNKVSTTVSEDSAGVVLKRISSEA 301
>TC225867 similar to UP|O03990 (O03990) RAD23, isoform I, partial (31%)
Length = 578
Score = 29.3 bits (64), Expect = 6.8
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Frame = +2
Query: 574 SISTTSSKVVYPDTSKMLIYDPKHNPGTGAAGTNAFDEILKATPPALVAFLANLPSVDGP 633
+I T VYP +MLI+ G +E A +V L+ S G
Sbjct: 212 NIETVQGADVYPAAQQMLIHQ-----GKVLRDATTLEENKVAENTFIVIMLSKSKSTSGE 376
Query: 634 TPNVDIVLSICLQSDLPTGQSVKVGIP--SQLPAGPAPATSELSGSSKSHPVQS 685
S L + P +V P S P PAPA + +S + PV S
Sbjct: 377 GSTT----STALSTKAPQTSTVPASTPPVSVAPQAPAPAATGALPASVTAPVSS 526
>AW832011
Length = 295
Score = 28.9 bits (63), Expect = 8.9
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = +2
Query: 31 EQLLQLYPTAAKFWKQYVEAHMAVNNDD------AIKQIFSRCLLNCLQVPLW 77
E + +L+P + W+Q+++ +++N I+++ R + +CL LW
Sbjct: 128 EAMSELFPLSPTMWRQWIKDELSLNTAARAEAVCRIRKLCERGVFDCLSGSLW 286
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,786,342
Number of Sequences: 63676
Number of extensions: 479385
Number of successful extensions: 2548
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of query: 757
length of database: 12,639,632
effective HSP length: 104
effective length of query: 653
effective length of database: 6,017,328
effective search space: 3929315184
effective search space used: 3929315184
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146910.2