BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146864.1 + phase: 0
(194 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222576 30 0.70
TC218184 similar to UP|O23727 (O23727) Peptidyl-prolyl cis-trans... 29 1.2
BM177218 28 3.5
TC215583 28 3.5
TC214853 similar to UP|STO_ARATH (Q96288) Salt-tolerance protein... 27 4.5
TC203661 similar to GB|AAO63400.1|28950953|BT005336 At3g26700 {A... 27 4.5
TC226106 similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein, partia... 27 5.9
TC223263 27 7.7
TC215479 27 7.7
TC215081 weakly similar to UP|DAN4_YEAST (P47179) Cell wall prot... 27 7.7
>TC222576
Length = 528
Score = 30.0 bits (66), Expect = 0.70
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 45 RQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLV 78
R RR EL + ++ Q+ CD++ + CDV+L+
Sbjct: 75 RLRRTELRPKRLNHLFQIRCDALHEKNKCDVFLL 176
>TC218184 similar to UP|O23727 (O23727) Peptidyl-prolyl cis-trans isomerase ,
partial (92%)
Length = 1203
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Frame = -3
Query: 56 TKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQV------EEIVKFLKP-EIVFLELC 108
T + I LSC +E+G V D Y+V + G S+ E + FLKP + L C
Sbjct: 955 TSHKILLSCSKIERGQVKD-YIVNQYVGTDGSTWTA*AWIPPERLYTFLKPCDCNHLATC 779
Query: 109 SDR 111
+DR
Sbjct: 778 NDR 770
>BM177218
Length = 437
Score = 27.7 bits (60), Expect = 3.5
Identities = 12/55 (21%), Positives = 30/55 (53%)
Frame = +1
Query: 95 VKFLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDNAIMTIRCSFSCIDNQHY 149
++ L E++ +LCS + +++ +N + + + D A+MT+ C+ + + Y
Sbjct: 151 MRVLMVEVIEFQLCSLHRNMVIQNNHLLVALEM**KDCALMTVSCTLNVSSEEWY 315
>TC215583
Length = 671
Score = 27.7 bits (60), Expect = 3.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -1
Query: 28 FSTTSAAFCRDQSPEKERQ--RRLELPKELTKNVI---QLSCDSMEKGGVCDVY 76
F++ S ++ P+KE R +E+ + K VI +SC S+E G+C VY
Sbjct: 464 FTSLSIVHHKNYKPKKEDYFIRYIEIVNIIFKIVITKVNISCSSLELDGLCIVY 303
>TC214853 similar to UP|STO_ARATH (Q96288) Salt-tolerance protein, partial
(65%)
Length = 2471
Score = 27.3 bits (59), Expect = 4.5
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Frame = +1
Query: 42 EKERQRRLELPKELTKNVIQLSCDSMEK-----------GGVCDVYLVGTFHGNKESSKQ 90
EKER+R E K +++ CD EK +C V NK +SK
Sbjct: 1405 EKEREREREEIYTAKKKNMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKH 1584
Query: 91 VEEIVKFLKPEIVFLELCSDR 111
+++ L ++ ++C D+
Sbjct: 1585 QRLLLQSLSNKLPRCDICQDK 1647
>TC203661 similar to GB|AAO63400.1|28950953|BT005336 At3g26700 {Arabidopsis
thaliana;} , partial (88%)
Length = 2451
Score = 27.3 bits (59), Expect = 4.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -2
Query: 107 LCSDRQEVLLHDNMEVSTILVHISDNAIMTIRCSFSCIDNQHYHSIINFFNFSQALT 163
+C EV +H N+ IL+H + + + +FSC ++ S++ F S+ LT
Sbjct: 596 ICHLSNEVFIHKNISCFEILMHQTGTQRVKMSQTFSC-TLSYWKSMLEF*LLSRLLT 429
>TC226106 similar to UP|Q9FGQ2 (Q9FGQ2) MtN3-like protein, partial (31%)
Length = 502
Score = 26.9 bits (58), Expect = 5.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 37 RDQSPEKERQRRLELPKELTKNVIQLS 63
RD+ E+ER+R E+PK VI +S
Sbjct: 139 RDEKSEREREREREIPKPCRPTVI*VS 219
>TC223263
Length = 434
Score = 26.6 bits (57), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 143 CIDNQHYHSIINFFNFSQ 160
C+ +HS INFF FS+
Sbjct: 193 CLSGHQFHSNINFFGFSE 140
>TC215479
Length = 1561
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 140 SFSCIDNQHYHSIIN 154
SFS DNQH HS IN
Sbjct: 1249 SFSACDNQHLHSSIN 1205
>TC215081 weakly similar to UP|DAN4_YEAST (P47179) Cell wall protein DAN4
precursor, partial (3%)
Length = 597
Score = 26.6 bits (57), Expect = 7.7
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = -2
Query: 36 CRDQSP-EKERQRRLELPKELTKNVIQ-LSCDSMEKGGVCD 74
CR P E+ +R + P + N+I+ ++ D KGGVCD
Sbjct: 197 CRRNLPRERSGRREWKCP*GILSNLIRDMAMDPNSKGGVCD 75
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,638,784
Number of Sequences: 63676
Number of extensions: 126985
Number of successful extensions: 981
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of query: 194
length of database: 12,639,632
effective HSP length: 92
effective length of query: 102
effective length of database: 6,781,440
effective search space: 691706880
effective search space used: 691706880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146864.1