Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.9 + phase: 0 
         (100 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC203911 similar to UP|Q95RQ4 (Q95RQ4) LD16074p (CG6393-PA), par...   193  1e-50
CD401151 similar to GP|23307683|gb| NADH dehydrogenase subunit 1...    76  2e-15
CO981930                                                               30  0.25
BG881769                                                               28  0.55
TC204639 UP|RSP4_SOYBN (O22518) 40S ribosomal protein SA (p40), ...    28  0.55
TC231157 similar to GB|CAC82909.1|25136916|ATH297948 cellulose s...    27  1.2
AW734225                                                               27  1.2
TC230433 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (45%)              27  1.6
TC216289 UP|Q8W3Y5 (Q8W3Y5) Flavonoid 3'-hydroxylase, complete         27  2.1
TC206666                                                               27  2.1
TC231948 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (69%)        27  2.1
TC224427                                                               27  2.1
BM525870                                                               27  2.1
TC231728                                                               26  2.7
BE822914 similar to GP|5882748|gb| Contains 2 PF|01535 DUF domai...    26  2.7
TC224281                                                               26  2.7
TC231455 weakly similar to UP|Q9SPL8 (Q9SPL8) Dehydrin, partial ...    26  2.7
CF922454                                                               26  2.7
TC206193 weakly similar to UP|Q9ZR88 (Q9ZR88) Bifunctional nucle...    26  2.7
BE803051 similar to PIR|T10863|T108 extensin precursor - kidney ...    26  3.6

>TC203911 similar to UP|Q95RQ4 (Q95RQ4) LD16074p (CG6393-PA), partial (12%)
          Length = 2055

 Score =  193 bits (491), Expect = 1e-50
 Identities = 84/99 (84%), Positives = 92/99 (92%)
 Frame = +1

Query: 1    MHRGFKFSITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPCCYCGV 60
            MHRGFKFSITNSIMWQTADR L+WKQSPEQP  +PH P+KA+D+ TP++QYH P C+CGV
Sbjct: 1075 MHRGFKFSITNSIMWQTADRPLMWKQSPEQPIVFPHCPYKAKDITTPVVQYH-PFCFCGV 1251

Query: 61   KSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 99
            KSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS
Sbjct: 1252 KSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 1368


>CD401151 similar to GP|23307683|gb| NADH dehydrogenase subunit 1 {Brugia
           malayi}, partial (8%)
          Length = 532

 Score = 76.3 bits (186), Expect = 2e-15
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = -2

Query: 68  RKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 99
           RKPGPKQGSLF GCGNWTATRGARCHYFEWAS
Sbjct: 531 RKPGPKQGSLFLGCGNWTATRGARCHYFEWAS 436


>CO981930 
          Length = 724

 Score = 29.6 bits (65), Expect = 0.25
 Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 3/38 (7%)
 Frame = -3

Query: 66  MVRKPGPKQGSLFFGCGNWTATRG---ARCHYFEWASA 100
           +V+K GP  G  F+ C +         A C YF+WAS+
Sbjct: 287 VVKKQGPNFGRRFYVCAHAEGPASNLEANCGYFKWASS 174


>BG881769 
          Length = 399

 Score = 28.5 bits (62), Expect = 0.55
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 1   MHRGFKFSITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKAR 42
           +H+     ITNS+MW+   R L+ +QS      YP  P K R
Sbjct: 169 LHKSS*QKITNSMMWRLDPRQLLERQSLR---VYPIIPSKFR 53


>TC204639 UP|RSP4_SOYBN (O22518) 40S ribosomal protein SA (p40), complete
          Length = 1244

 Score = 28.5 bits (62), Expect = 0.55
 Identities = 16/35 (45%), Positives = 20/35 (56%)
 Frame = -1

Query: 21  SLIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPC 55
           SL+W    EQ +     PF+AR   TP +Q HHPC
Sbjct: 725 SLLWFSIEEQINH--DIPFEARANGTPHLQ-HHPC 630


>TC231157 similar to GB|CAC82909.1|25136916|ATH297948 cellulose synthase-like
           protein {Arabidopsis thaliana;} , partial (23%)
          Length = 932

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 27  SPEQPSAYPHFPFKARDMNTPIIQYHHPC 55
           S    S    F  +  DM+TP + +H+PC
Sbjct: 482 SSSPSSGVADFEVRVNDMSTPAMTFHNPC 396


>AW734225 
          Length = 412

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +1

Query: 16  QTADRSLIWKQSPEQPSAYP------HFPFKARDMNTPIIQYHHP 54
           ++ DRSL+ +  P Q    P      HFP       TP I +H+P
Sbjct: 121 RSLDRSLLVRSHPPQVPIPPPLRCPRHFPLSRPRARTPSIGWHNP 255


>TC230433 similar to UP|Q9LRH6 (Q9LRH6) ZIM, partial (45%)
          Length = 889

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = +1

Query: 55  CCYCGVKSSRGMVRKPGPK-QGSLFFGCGNWTATRGA 90
           C +CG+ S    + + GP    SL   CG + A RGA
Sbjct: 370 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGA 480


>TC216289 UP|Q8W3Y5 (Q8W3Y5) Flavonoid 3'-hydroxylase, complete
          Length = 1883

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 31   PSAYPHFPFKARDMNTPIIQYHHPCCYC 58
            P  Y   PF     +   I YHH C YC
Sbjct: 1766 PKTYEMTPFHVFGSSHTNILYHHVCFYC 1683


>TC206666 
          Length = 1493

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 22 LIWKQSPEQPSAYPHFPF 39
          L+WK SP  P    HF F
Sbjct: 76 LLWKHSPSSPKTLAHFSF 129


>TC231948 similar to UP|Q6NNI3 (Q6NNI3) At5g28490, partial (69%)
          Length = 1023

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 51  YHHPCCYCGVKSSRGMVRKP 70
           YH  CC C  K S GM R P
Sbjct: 447 YHFHCCCCLNKLSSGMPRSP 388


>TC224427 
          Length = 794

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 27  SPEQPSAYPHFPFKARDMNTPIIQYHHPCCY 57
           S  +P+A+  F   A   + P  + HHP CY
Sbjct: 280 SANRPAAFSVFSKSAESPSPPNPKRHHPVCY 372


>BM525870 
          Length = 436

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 29 EQPSAYPHFPFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKPGPKQGS 76
          E P   P  P    +  T   QYHH CC  G ++S G+ R+  P + S
Sbjct: 46 ETPLGSPLLP----NPKTTSYQYHHLCCR-GSRNSSGV*RQRNPFERS 174


>TC231728 
          Length = 470

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 46 TPIIQYHHPCCY 57
          TP+++  HPCCY
Sbjct: 43 TPVLEPQHPCCY 78


>BE822914 similar to GP|5882748|gb| Contains 2 PF|01535 DUF domains.
           {Arabidopsis thaliana}, partial (17%)
          Length = 610

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 24  WKQSPEQPSAYPHFPFKARDMNTPIIQYHHPCCYCGVKSSR-GMVRKPGP 72
           W++    P+ +P FPF A+  N  +   +  C  C  +     ++R+P P
Sbjct: 191 WQRGSPHPTKHPEFPFSAK--NGKLNVCNRSCTACLTREDPVTLLRRPHP 334


>TC224281 
          Length = 660

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 18/51 (35%), Positives = 22/51 (42%), Gaps = 2/51 (3%)
 Frame = +2

Query: 33  AYPHFPFKARDMNTPII--QYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGC 81
           A P  P   R + +PI      H  C C   SS  ++R PGP   SL   C
Sbjct: 329 AVPPVPKLTRSITSPIWARSSRHWACECCGASSLHVLRHPGPHTLSLNVCC 481


>TC231455 weakly similar to UP|Q9SPL8 (Q9SPL8) Dehydrin, partial (7%)
          Length = 718

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = -1

Query: 45  NTPIIQYHHPCC 56
           N P+I YH PCC
Sbjct: 115 NNPVIPYHVPCC 80


>CF922454 
          Length = 785

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = -1

Query: 27  SPEQPSAYPHFPFKARDMNTPIIQYHHPCCY 57
           SP  PS  P  P       +P + YH+PC Y
Sbjct: 305 SPSSPSPSPSSP-------SPSLPYHYPCHY 234


>TC206193 weakly similar to UP|Q9ZR88 (Q9ZR88) Bifunctional nuclease
            (Fragment), partial (84%)
          Length = 1973

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 10/24 (41%), Positives = 14/24 (57%), Gaps = 2/24 (8%)
 Frame = -1

Query: 52   HHPCCYCGVKSSRGMVR--KPGPK 73
            H+PCC+C  +   G +R  K  PK
Sbjct: 1001 HNPCCFCNCRGPLGYLRSAKQRPK 930


>BE803051 similar to PIR|T10863|T108 extensin precursor - kidney bean,
          partial (10%)
          Length = 442

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 16 QTADRSLIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPCC 56
          Q   RSL+  Q P++   Y + P       +P   Y +P C
Sbjct: 29 QNTTRSLVLHQDPKKHYKYQNLPPSNYKNKSPSSPYKYPSC 151


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.137    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,614,993
Number of Sequences: 63676
Number of extensions: 127956
Number of successful extensions: 1106
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of query: 100
length of database: 12,639,632
effective HSP length: 76
effective length of query: 24
effective length of database: 7,800,256
effective search space: 187206144
effective search space used: 187206144
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)


Medicago: description of AC146862.9