BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.6 - phase: 0 /pseudo
(221 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit... 44 4e-05
TC209296 31 0.38
TC209295 similar to UP|Q9T6M0 (Q9T6M0) NADH-ubiquinone oxidoredu... 31 0.50
TC229778 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related p... 29 1.9
TC209828 28 4.2
CD416187 28 4.2
TC224891 homologue to UP|Q6JJ29 (Q6JJ29) Prephenate dehydratase,... 27 7.2
TC204952 homologue to UP|PDA1_VIGUN (O04865) Phospholipase D alp... 27 9.5
TC212716 similar to UP|Q9SB32 (Q9SB32) SRG1-like protein (At4g25... 27 9.5
>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
ribosomal protein, partial (24%)
Length = 689
Score = 44.3 bits (103), Expect = 4e-05
Identities = 16/36 (44%), Positives = 26/36 (71%)
Frame = +3
Query: 153 LQRILHVSEMQGFPGMIGSIDCMHWEWKNCPKAWEG 188
+Q ++ + E++GF M+GSID +HW+ K C AW+G
Sbjct: 12 IQYLMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKG 119
>TC209296
Length = 422
Score = 31.2 bits (69), Expect = 0.38
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 154 QRILHVSEMQGFPGMIGSIDCMH-----WEWKNCPKAWEGTLNDINVLDRSPVF 202
+RIL +S++ G+ G +GS+ + W WK D+NVLDR +F
Sbjct: 224 RRILPLSQLNGYVG*MGSVKRLQLQRK*WNWK----------QDVNVLDRMLLF 355
>TC209295 similar to UP|Q9T6M0 (Q9T6M0) NADH-ubiquinone oxidoreductase
subunit 1, partial (6%)
Length = 798
Score = 30.8 bits (68), Expect = 0.50
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 155 RILHVSEMQGFPGMIGSIDCMH-----WEWKNCPKAWEGTLNDINVLDRSPVF 202
RIL +S++ G+ G +GS+ + W WK D+NVLDR +F
Sbjct: 73 RILPLSQLNGYVG*MGSVKRLQLQRK*WNWK----------QDVNVLDRMLLF 201
>TC229778 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related protein-like,
partial (8%)
Length = 494
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/68 (30%), Positives = 27/68 (38%)
Frame = +3
Query: 124 TTLECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSEMQGFPGMIGSIDCMHWEWKNCP 183
TT+ LRR + VY R +QD+ Q+ PG S DC HW P
Sbjct: 147 TTMTALRRDG------HPSVYRRVISQDEKQK----------PGKGHSSDCSHWCLPGVP 278
Query: 184 KAWEGTLN 191
W L+
Sbjct: 279 DIWNEMLS 302
>TC209828
Length = 541
Score = 27.7 bits (60), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 100 TTMRMLAYGVAADAVDEYIKIGGTTTLECLRRFCKGI 136
T +R+++ G+ + + + GGT T + LRR CK +
Sbjct: 485 TRLRIVS*GINTTPICAHPRTGGTRTNQRLRRHCKSL 375
>CD416187
Length = 451
Score = 27.7 bits (60), Expect = 4.2
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 1/74 (1%)
Frame = -2
Query: 35 ANQRLIDDYFANEPTYDDAMFRRRYRMQKHVFLRIVGDLSITD-NYFTQRVDAANKEGIS 93
AN R + + A RR ++ F +V DL I+D +YF+QR +
Sbjct: 444 ANMRTVKEKRAELEKLKSTFVRRASEFLRNYFASLV-DLMISDKSYFSQRGQLKRPDHAD 268
Query: 94 PLAKCTTTMRMLAY 107
KC T R+L +
Sbjct: 267 LRYKCRTYARLLQH 226
>TC224891 homologue to UP|Q6JJ29 (Q6JJ29) Prephenate dehydratase, partial
(75%)
Length = 1993
Score = 26.9 bits (58), Expect = 7.2
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Frame = +1
Query: 57 RRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGIS-------PLAKCTTTMRMLAYGV 109
R Y + L IVG++ + ++ + KE ++ LA+C T+ L V
Sbjct: 679 RNYDLLLRHRLHIVGEVQLPAHHCLLALPGVRKEFLTRVISHPQALAQCEHTLTKLGLNV 858
Query: 110 AADAVDE 116
A +AVD+
Sbjct: 859 AREAVDD 879
>TC204952 homologue to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1 (PLD
alpha 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D 1) ,
partial (22%)
Length = 743
Score = 26.6 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 183 PKAWEGTLNDINVLDRSPVFDDVNQGKTPRVEFL 216
P + T + + V + SP D+N TPR+ FL
Sbjct: 383 PVTFSATPSGLPVKEMSPSCQDLNSSPTPRLAFL 484
>TC212716 similar to UP|Q9SB32 (Q9SB32) SRG1-like protein (At4g25310),
partial (7%)
Length = 549
Score = 26.6 bits (57), Expect = 9.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 130 RRFCKGIIRLYEEVYLRAPNQ 150
+ FCKG+++LY Y + P +
Sbjct: 355 KNFCKGLLKLYSLYYYKCPRK 293
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,225,936
Number of Sequences: 63676
Number of extensions: 118056
Number of successful extensions: 607
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of query: 221
length of database: 12,639,632
effective HSP length: 94
effective length of query: 127
effective length of database: 6,654,088
effective search space: 845069176
effective search space used: 845069176
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146862.6