TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.5 + phase: 0 /pseudo
         (624 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208498 homologue to UP|Q9SLZ4 (Q9SLZ4) Retinoblastoma-related ...   168  6e-42
BU550026 homologue to GP|6681366|dbj retinoblastoma-related prot...    62  6e-10
TC203637 similar to UP|PSBO_PEA (P14226) Oxygen-evolving enhance...    31  1.9
TC216003 UP|TF2B_SOYBN (P48513) Transcription initiation factor ...    31  1.9
TC229619                                                               30  2.5
BF325514                                                               30  2.5
BU081344 similar to GP|14994231|gb| drought-induced protein {Ret...    29  7.1
BM309110                                                               28  9.3

>TC208498 homologue to UP|Q9SLZ4 (Q9SLZ4) Retinoblastoma-related protein,
           partial (15%)
          Length = 777

 Score =  168 bits (426), Expect = 6e-42
 Identities = 81/98 (82%), Positives = 88/98 (89%)
 Frame = +2

Query: 483 PLLVELGPGGATVRSDQVPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSAAHNVYV 542
           PLLVELGP G T +SD++PE N KN+GHL Q PGSP+ISPFP+LPDMSPKKVSA HNVYV
Sbjct: 2   PLLVELGPAGPTTKSDRIPEIN-KNEGHLAQCPGSPKISPFPTLPDMSPKKVSATHNVYV 178

Query: 543 SPLRSSKMDALISHSSKSYYACXGESTHAYQSPXKDLT 580
           SPLRSSKM+ALISHSSKSYYAC GESTHAYQSP KDLT
Sbjct: 179 SPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLT 292


>BU550026 homologue to GP|6681366|dbj retinoblastoma-related protein {Pisum
           sativum}, partial (8%)
          Length = 694

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 28/32 (87%), Positives = 30/32 (93%)
 Frame = -3

Query: 549 KMDALISHSSKSYYACXGESTHAYQSPXKDLT 580
           +M+ALISHSSKSYYAC GESTHAYQSP KDLT
Sbjct: 452 QMEALISHSSKSYYACVGESTHAYQSPSKDLT 357


>TC203637 similar to UP|PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1,
           chloroplast precursor (OEE1) (33 kDa subunit of oxygen
           evolving system of photosystem II) (OEC 33 kDa subunit)
           (33 kDa thylakoid membrane protein), complete
          Length = 1165

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 326 PLQSAFASPTKPNP--GGGGETCAETGISVFFSKIVKLG 362
           PL + F + ++ N   GG GE+C   G+  F SKI ++G
Sbjct: 297 PLWNTFCTRSRNNES*GGKGESCNFGGVDTFLSKIFEIG 181


>TC216003 UP|TF2B_SOYBN (P48513) Transcription initiation factor IIB (General
           transcription factor TFIIB), complete
          Length = 1126

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +3

Query: 336 KPNPGGGGETCAETGISVFFS------KIVKLGAVRISGMVERLQLSQQIRENVYSLFQR 389
           KPN GGGG     + +  + +      + + +    I+ M +RL L   I++    +++R
Sbjct: 294 KPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDRLGLVATIKDRANEIYKR 473

Query: 390 ILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREI 427
           + +Q +S    R+ D ++  C Y   +      T +EI
Sbjct: 474 VEDQKSSR--GRNQDALLAACLYIACRQEDKPRTVKEI 581


>TC229619 
          Length = 1334

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 422 LTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGGSRHRTGQE 465
           L    + +  R + +     FR + + WS   R  GS +RTGQ+
Sbjct: 521 LVLARVFWRIRIRCRASSPFFRGLRISWSPLNRRSGSPNRTGQD 390


>BF325514 
          Length = 421

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 382 NVYSLFQRILNQWTS-LFFNRHIDQIILCCFYGVAKISQLN 421
           NVYS+ Q ++ +WTS    +  +  I  CCF+G +  ++ N
Sbjct: 129 NVYSVLQYLIIKWTSETKSSSELGFICHCCFFGYSNFTKTN 7


>BU081344 similar to GP|14994231|gb| drought-induced protein {Retama raetam},
           partial (67%)
          Length = 422

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (46%)
 Frame = +1

Query: 460 HRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQVPEANNKNDGH 510
           H+ G+ H +    + E F+  VK  +   G GGA     +  E NNK  GH
Sbjct: 70  HKAGEYHGEHKPEHKEGFLDKVKDKIH--GEGGAAEGEKKKKEKNNKEHGH 216


>BM309110 
          Length = 406

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
 Frame = +2

Query: 512 VQNPGSPRISPFPSLPDMS------------PKKVSAAHNVYVSPLRSSKMDALISHSSK 559
           +Q   SPR+ P PS P +             PK+ S   N+    LRSSK    + H++K
Sbjct: 53  LQRRTSPRLEPLPSHPQVPRSRGHWHCRCTLPKRPS---NIPTQKLRSSKGPGAVKHAAK 223

Query: 560 S 560
           +
Sbjct: 224 A 226


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.342    0.148    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,159,770
Number of Sequences: 63676
Number of extensions: 394303
Number of successful extensions: 3281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3276
length of query: 624
length of database: 12,639,632
effective HSP length: 103
effective length of query: 521
effective length of database: 6,081,004
effective search space: 3168203084
effective search space used: 3168203084
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 62 (28.5 bits)