BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146855.3 - phase: 0
(186 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224548 similar to UP|Q8H8S1 (Q8H8S1) Ribosomal protein L15, co... 358 e-100
TC224563 homologue to UP|RL15_ARATH (O23515) 60S ribosomal prote... 355 5e-99
CO981481 276 3e-75
AW102140 similar to GP|22795244|gb ribosomal protein L15 {Oryza ... 184 2e-47
AW234702 similar to SP|O82528|RL15 60S ribosomal protein L15. [P... 177 3e-45
BE020362 similar to GP|21592700|gb 60S ribosomal protein L15 hom... 161 1e-40
BE020116 weakly similar to SP|O82528|RL15 60S ribosomal protein ... 155 1e-38
TC224752 similar to UP|Q96S84 (Q96S84) Ribosomal protein L15, pa... 129 1e-30
BF071643 weakly similar to SP|O82528|RL15_ 60S ribosomal protein... 114 3e-26
AW704128 similar to SP|O82528|RL15_ 60S ribosomal protein L15. [... 110 3e-25
AW458751 weakly similar to GP|22795244|gb| ribosomal protein L15... 108 1e-24
BF069327 74 4e-14
BI968006 similar to SP|O65050|R15A_ 60S ribosomal protein L15-1.... 73 9e-14
TC216741 similar to UP|Q75UJ6 (Q75UJ6) DREB-like protein, partia... 29 1.4
TC208145 similar to UP|Q9SNY8 (Q9SNY8) Branched-chain amino acid... 29 1.4
BG239576 similar to PIR|S20508|S205 ribulose-bisphosphate carbox... 28 1.9
BM139923 similar to PIR|T45874|T458 transcription factor NF-Y C... 28 3.2
BG238597 similar to GP|19352051|dbj auxin response factor 10 {Or... 27 4.2
TC206108 similar to UP|Q94F49 (Q94F49) AT5g27670/F15A18_130, par... 27 5.5
CO984086 27 7.1
>TC224548 similar to UP|Q8H8S1 (Q8H8S1) Ribosomal protein L15, complete
Length = 820
Score = 358 bits (920), Expect = e-100
Identities = 172/186 (92%), Positives = 178/186 (95%)
Frame = +1
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
MRF+QRVRCWEYRQQ SIVRLTR TRPDKARRLG+KAKQGYV+YRVRVRRGGRKRPV KG
Sbjct: 127 MRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKG 306
Query: 61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDST+KYFEVILVDVA
Sbjct: 307 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVA 486
Query: 121 HSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTL 180
H+AIRNDPRINWL NPVHKHRELRGLTSAGK NRGL G+GH YHKARPSRRA WKRNNTL
Sbjct: 487 HAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTL 666
Query: 181 SLRRYR 186
SLRRYR
Sbjct: 667 SLRRYR 684
>TC224563 homologue to UP|RL15_ARATH (O23515) 60S ribosomal protein L15,
complete
Length = 1765
Score = 355 bits (912), Expect = 5e-99
Identities = 170/186 (91%), Positives = 177/186 (94%)
Frame = +2
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
MRF+QRVRCWEYRQQ SIVRLTR TRPDKARRLG+KAKQGYV+YRVRVRRGGRKRPV KG
Sbjct: 80 MRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKG 259
Query: 61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDST+KYFEVILVDVA
Sbjct: 260 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVA 439
Query: 121 HSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTL 180
H+A+RNDPRINWL NPVHKHRELRGLTSAGK NRGL G+GH YHK RPSRRA WKRNNTL
Sbjct: 440 HTAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTL 619
Query: 181 SLRRYR 186
SLRRYR
Sbjct: 620 SLRRYR 637
>CO981481
Length = 769
Score = 276 bits (707), Expect = 3e-75
Identities = 130/184 (70%), Positives = 152/184 (81%)
Frame = -1
Query: 3 FMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIV 62
F+ RVRCWE RQ + I R +RP+R DKARRLGYKAKQGYV+YRVRVRRGGRKRP KG
Sbjct: 694 FLLRVRCWELRQLNVIHRASRPSRLDKARRLGYKAKQGYVIYRVRVRRGGRKRPAPKGAT 515
Query: 63 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHS 122
YGKPTNQG+ QLK+QRS ++ AEER GR+ LRVLNSYW+N+DST+KY+EVILVD H
Sbjct: 514 YGKPTNQGINQLKYQRSLKATAEERVGRRCANLRVLNSYWINQDSTYKYYEVILVDPQHK 335
Query: 123 AIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSL 182
AIR DPRINW+ NPVHKHRE RGLT+ GK++RGL+ KGHRY+K + RR WKR+NTLSL
Sbjct: 334 AIRIDPRINWIVNPVHKHREARGLTATGKKSRGLN-KGHRYNKTKAGRRKTWKRHNTLSL 158
Query: 183 RRYR 186
RYR
Sbjct: 157 WRYR 146
>AW102140 similar to GP|22795244|gb ribosomal protein L15 {Oryza sativa
(japonica cultivar-group)}, partial (74%)
Length = 502
Score = 184 bits (468), Expect = 2e-47
Identities = 98/149 (65%), Positives = 113/149 (75%)
Frame = +2
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
MR +Q +R WE +VRLTR PDKA+ LG KAKQGYV+YRVRVRRGGR RP G
Sbjct: 53 MR*LQWLRSWEDMLYPYVVRLTRXASPDKAQCLGLKAKQGYVIYRVRVRRGGRMRPDPIG 232
Query: 61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
IVYGKP +QGV+QLK QR +RSVAEERAGR L GLRVL SYWVNED T+ Y+EV LVDVA
Sbjct: 233 IVYGKPADQGVSQLKLQRDRRSVAEERAGR*LSGLRVLISYWVNEDYTY*YYEVNLVDVA 412
Query: 121 HSAIRNDPRINWLTNPVHKHRELRGLTSA 149
H+AI D +N L +P+ HR +RGLTSA
Sbjct: 413 HAAIIADHGVNCLAHPLR*HR*VRGLTSA 499
>AW234702 similar to SP|O82528|RL15 60S ribosomal protein L15. [Petunia]
{Petunia hybrida}, partial (69%)
Length = 496
Score = 177 bits (448), Expect = 3e-45
Identities = 95/153 (62%), Positives = 112/153 (73%), Gaps = 6/153 (3%)
Frame = +2
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
MRF+QRVRCWEYRQQ SIVR+TR TRPDKARRLG+KA GYV Y VRV+RGGRKRP+S+
Sbjct: 53 MRFLQRVRCWEYRQQPSIVRVTRSTRPDKARRLGFKANHGYVNYPVRVKRGGRKRPLSQR 232
Query: 61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
I Y KP N GVTQLKF S+R +AE+RAGRKLGGL L SYWV++DST KYF D+A
Sbjct: 233 IGYWKPPNHGVTQLKF*PSQR*IAEDRAGRKLGGLMRLISYWVSDDSTSKYFVENRGDIA 412
Query: 121 HSAIRNDPRINWLTNP------VHKHRELRGLT 147
H+ I+ R +P +HK REL L+
Sbjct: 413 HARIKYRSR-----SP*SSAILIHKRRELNRLS 496
>BE020362 similar to GP|21592700|gb 60S ribosomal protein L15 homolog
{Arabidopsis thaliana}, partial (59%)
Length = 460
Score = 161 bits (408), Expect = 1e-40
Identities = 89/138 (64%), Positives = 101/138 (72%), Gaps = 1/138 (0%)
Frame = +2
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
MRF++RVRCWEYR Q SIVR+TR TRPDKARRLGYK QGYV+YRVRV RGGRKRP KG
Sbjct: 53 MRFLRRVRCWEYRHQPSIVRMTRSTRPDKARRLGYKDNQGYVIYRVRVMRGGRKRPDPKG 232
Query: 61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFK-YFEVILVDV 119
IVYGKPTNQG+TQLKFQ RS+ E+ A R+LGGL VL + E + Y V LV V
Sbjct: 233 IVYGKPTNQGLTQLKFQLI*RSLVEDLA*RELGGLMVL--FLTAE*GLYL*YLGVSLVAV 406
Query: 120 AHSAIRNDPRINWLTNPV 137
A +A +DP I NPV
Sbjct: 407 ARAAGGDDPSIALRVNPV 460
>BE020116 weakly similar to SP|O82528|RL15 60S ribosomal protein L15.
[Petunia] {Petunia hybrida}, partial (56%)
Length = 400
Score = 155 bits (391), Expect = 1e-38
Identities = 79/133 (59%), Positives = 98/133 (73%)
Frame = +2
Query: 18 IVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQ 77
IV +T TRPD A LG+ AKQ YV+YR+RVRRGGR RP+ GIVYGKPT+ G TQL
Sbjct: 2 IVLMTMSTRPD*ASCLGFMAKQVYVIYRIRVRRGGRHRPIPTGIVYGKPTHHGFTQLNLL 181
Query: 78 RSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPV 137
R+K SVA ERAG LGGLRVL Y VN+DST+KYF+V+L+D+A++ + +DP I W+ +
Sbjct: 182 RNKTSVA*ERAGLNLGGLRVLIHYCVNDDSTYKYFDVMLLDLANAPMIHDP*IRWVVISM 361
Query: 138 HKHRELRGLTSAG 150
H EL GLTS G
Sbjct: 362 HNRIELCGLTSVG 400
>TC224752 similar to UP|Q96S84 (Q96S84) Ribosomal protein L15, partial (34%)
Length = 484
Score = 129 bits (323), Expect = 1e-30
Identities = 59/69 (85%), Positives = 61/69 (87%)
Frame = +3
Query: 118 DVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRN 177
DVAH + RNDPRINWL NPVHKHRELRGLTSAGK NRGL G+GH YHK RPSRRA WKRN
Sbjct: 3 DVAHPSDRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRN 182
Query: 178 NTLSLRRYR 186
NTLSLRRYR
Sbjct: 183 NTLSLRRYR 209
>BF071643 weakly similar to SP|O82528|RL15_ 60S ribosomal protein L15.
[Petunia] {Petunia hybrida}, partial (32%)
Length = 331
Score = 114 bits (284), Expect = 3e-26
Identities = 61/110 (55%), Positives = 73/110 (65%)
Frame = +2
Query: 40 GYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLN 99
GYV+ V VR GG KRP K IV G P+ G+ + R A E+AG LGGL+ L
Sbjct: 2 GYVISHVCVRTGGPKRPALKCIVNGMPSYHGLI*FIS*HAYRYGA*EQAGMYLGGLKCLI 181
Query: 100 SYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSA 149
SYW NED + KYFEV+++D AHSA+ NDP INW+ NP H H ELRGLTSA
Sbjct: 182 SYWDNEDISHKYFEVMMLDDAHSAVINDPPINWICNPDHIHTELRGLTSA 331
>AW704128 similar to SP|O82528|RL15_ 60S ribosomal protein L15. [Petunia]
{Petunia hybrida}, partial (35%)
Length = 262
Score = 110 bits (276), Expect = 3e-25
Identities = 53/80 (66%), Positives = 71/80 (88%)
Frame = +2
Query: 39 QGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVL 98
+ Y++YR+RV++GG+K+PV K I+ KPT+QG+TQLKFQRSKRSVAE+++ +KLGGLRVL
Sbjct: 8 KAYMIYRIRVKKGGQKKPVPKSII*WKPTDQGMTQLKFQRSKRSVAEKQS*QKLGGLRVL 187
Query: 99 NSYWVNEDSTFKYFEVILVD 118
NSY NEDST KYF+VIL++
Sbjct: 188 NSY*GNEDSTDKYFKVILMN 247
>AW458751 weakly similar to GP|22795244|gb| ribosomal protein L15 {Oryza
sativa (japonica cultivar-group)}, partial (42%)
Length = 259
Score = 108 bits (270), Expect = 1e-24
Identities = 54/86 (62%), Positives = 60/86 (68%)
Frame = +2
Query: 101 YWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKG 160
YWVNEDST+ YFE I VDVAH+ I NDP +W+T P H HR+L GLTSA K G G+
Sbjct: 2 YWVNEDSTYTYFEEIPVDVAHADILNDPTFHWITYPEHIHRDLCGLTSASKSTMG*RGR* 181
Query: 161 HRYHKARPSRRANWKRNNTLSLRRYR 186
H YH AR R A KR NTLSLRRYR
Sbjct: 182 HLYHNARSFRWATSKRYNTLSLRRYR 259
>BF069327
Length = 218
Score = 73.9 bits (180), Expect = 4e-14
Identities = 35/72 (48%), Positives = 52/72 (71%)
Frame = +2
Query: 76 FQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTN 135
F K SV +E + +KL L++LNSY +N++ST+KYF++I +D+ + IRN P IN ++N
Sbjct: 2 FXHIKMSVTKEPSRQKLRRLKILNSY*INKNSTYKYFDIIPIDLPDTTIRNYPIINVVSN 181
Query: 136 PVHKHRELRGLT 147
P+H HR LR LT
Sbjct: 182 PIHNHR*LRRLT 217
>BI968006 similar to SP|O65050|R15A_ 60S ribosomal protein L15-1. [Black
spruce] {Picea mariana}, partial (31%)
Length = 727
Score = 72.8 bits (177), Expect = 9e-14
Identities = 32/37 (86%), Positives = 33/37 (88%)
Frame = -2
Query: 150 GKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR 186
GK NRGL G+GH YHKARPSRRA WKRNNTLSLRRYR
Sbjct: 222 GKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 112
Score = 26.2 bits (56), Expect = 9.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRP 24
MRF+QRVR WE +Q + R + P
Sbjct: 250 MRFLQRVRYWEKQQGFTWQRTSVP 179
>TC216741 similar to UP|Q75UJ6 (Q75UJ6) DREB-like protein, partial (36%)
Length = 769
Score = 28.9 bits (63), Expect = 1.4
Identities = 14/30 (46%), Positives = 15/30 (49%)
Frame = +1
Query: 150 GKENRGLSGKGHRYHKARPSRRANWKRNNT 179
G G GK H Y A PSRR W+R T
Sbjct: 193 GSPKSGSRGKSHAYGSA-PSRRRRWRRRPT 279
>TC208145 similar to UP|Q9SNY8 (Q9SNY8) Branched-chain amino acid
aminotransferase , partial (43%)
Length = 506
Score = 28.9 bits (63), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Frame = -3
Query: 56 PVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNS 100
P+SKG++Y +P G TQ F ++ A G+ +L++
Sbjct: 384 PISKGLIYREPLPAGGTQRLFAKTVSFTASTNCSTVGDGMHILSA 250
>BG239576 similar to PIR|S20508|S205 ribulose-bisphosphate carboxylase (EC
4.1.1.39) small chain precursor - kidney bean, partial
(17%)
Length = 532
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -1
Query: 1 MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLG-----YKAKQGYVVYRVRVRRGGRKR 55
+RF R C + ++++ RP K R++G AK+G + G KR
Sbjct: 298 LRFRARKPCLPKK----VIQVLRPMWISKVRQVGKSAKPMSAKEGTHPQAMHSSAGDNKR 131
Query: 56 PVSKGIVYGKPTNQGV 71
G + G+ TNQG+
Sbjct: 130 RKVNGGLLGRETNQGL 83
>BM139923 similar to PIR|T45874|T458 transcription factor NF-Y
CCAAT-binding-like protein - Arabidopsis thaliana,
partial (41%)
Length = 392
Score = 27.7 bits (60), Expect = 3.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 71 VTQLKFQRSKRSVAEERAGRKLGG 94
V QL+ QRS+R V+E G+ +GG
Sbjct: 254 VHQLRHQRSERLVSERERGKTIGG 325
>BG238597 similar to GP|19352051|dbj auxin response factor 10 {Oryza sativa},
partial (5%)
Length = 487
Score = 27.3 bits (59), Expect = 4.2
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 4/47 (8%)
Frame = +2
Query: 13 RQQSSIVRLTRPTRPDKA----RRLGYKAKQGYVVYRVRVRRGGRKR 55
+Q S+ P+R D++ +L + A Q YVVY ++RR R++
Sbjct: 146 KQNQSVAAQLSPSRSDESGDSHTQLVFLASQRYVVYLFQIRRKRREQ 286
>TC206108 similar to UP|Q94F49 (Q94F49) AT5g27670/F15A18_130, partial (75%)
Length = 768
Score = 26.9 bits (58), Expect = 5.5
Identities = 28/109 (25%), Positives = 47/109 (42%)
Frame = +2
Query: 49 RRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDST 108
RRG RK+ VSK I G Q R R + + R R+LG + +
Sbjct: 125 RRGDRKKSVSKSIKAG-------LQFPVSRVARYLKKGRYSRRLG-----TGAPIYLAAV 268
Query: 109 FKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLS 157
+Y ++++A +A R++ + NP H +R GK +G++
Sbjct: 269 LEYLAAEVLELAGNAARDNKKNR--INPRHVLLAVRNDDELGKLLQGVT 409
>CO984086
Length = 883
Score = 26.6 bits (57), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 6 RVRCWEYRQQSSIVRLTRPTRP 27
+++CW +Q R+TR TRP
Sbjct: 66 KLKCW*TKQYKETARITRATRP 131
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,892,097
Number of Sequences: 63676
Number of extensions: 97786
Number of successful extensions: 548
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of query: 186
length of database: 12,639,632
effective HSP length: 92
effective length of query: 94
effective length of database: 6,781,440
effective search space: 637455360
effective search space used: 637455360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146855.3