BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.8 + phase: 0 /partial
(71 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210534 similar to UP|Q6QPL9 (Q6QPL9) At5g24500 (Fragment), par... 60 2e-10
TC212337 weakly similar to UP|Q9SM91 (Q9SM91) Zwh18.1, partial (... 50 3e-07
BM270317 45 5e-06
TC227070 similar to UP|Q9XHD5 (Q9XHD5) B12D protein, partial (97%) 27 1.5
TC225500 homologue to UP|Q6RJY1 (Q6RJY1) 60S ribosomal protein L... 27 2.0
TC204578 similar to UP|EXL1_ARATH (Q9LZT4) Expansin-like 1 precu... 27 2.6
BG363379 similar to GP|2224419|dbj|B ORF67 {Chlorella vulgaris},... 27 2.6
TC228032 27 2.6
BG363363 27 2.6
AI900039 weakly similar to SP|O23920|HPPD_ 4-hydroxyphenylpyruva... 26 4.4
AW185120 26 4.4
CO984448 26 4.4
TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruva... 26 4.4
TC212928 similar to GB|AAQ65186.1|34365749|BT010563 At2g17970 {A... 25 5.8
TC208369 weakly similar to UP|Q9LQ75 (Q9LQ75) T1N6.22 protein, p... 25 5.8
TC205162 similar to UP|UMP3_ARATH (Q9LEV3) Protein At5g10860, mi... 25 5.8
TC221281 weakly similar to UP|Q6IL51 (Q6IL51) HDC10343, partial ... 25 7.5
CO986113 25 7.5
TC211924 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor... 25 7.5
TC220326 25 9.8
>TC210534 similar to UP|Q6QPL9 (Q6QPL9) At5g24500 (Fragment), partial (7%)
Length = 478
Score = 60.1 bits (144), Expect = 2e-10
Identities = 31/53 (58%), Positives = 41/53 (76%), Gaps = 4/53 (7%)
Frame = +3
Query: 18 KVDKFVFRKND-WKIRERKQKNKFVAKKKSKLT---RELDIHGIGSSKYSFFN 66
KVDKFVFRKN+ WK+RERK KN+F+AK+KS T RE+D++ I +SK + N
Sbjct: 3 KVDKFVFRKNNVWKVRERKPKNRFLAKRKSNSTFAPREVDVNAIENSKDNVIN 161
>TC212337 weakly similar to UP|Q9SM91 (Q9SM91) Zwh18.1, partial (11%)
Length = 536
Score = 49.7 bits (117), Expect = 3e-07
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +3
Query: 1 GFTKSEVTVIDTSCRVWKVDKFVFRKN 27
GFTKSEVTVIDTS WK+DKFVFRKN
Sbjct: 456 GFTKSEVTVIDTSSPGWKLDKFVFRKN 536
>BM270317
Length = 422
Score = 45.4 bits (106), Expect = 5e-06
Identities = 22/43 (51%), Positives = 31/43 (71%), Gaps = 3/43 (6%)
Frame = +2
Query: 27 NDWKIRERKQKNKFVAKKKSKLT---RELDIHGIGSSKYSFFN 66
N WK+RERK KN+F+AK+KS T RE+D++ I +SK + N
Sbjct: 2 NVWKVRERKPKNRFLAKRKSNSTFAPREVDVNAIENSKDNVIN 130
>TC227070 similar to UP|Q9XHD5 (Q9XHD5) B12D protein, partial (97%)
Length = 856
Score = 27.3 bits (59), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSK 47
C + K F F+K K +++K+K K KKK K
Sbjct: 519 CLIIKFYTFTFKKKKKKKKKKKKKKKKKKKKKKK 620
>TC225500 homologue to UP|Q6RJY1 (Q6RJY1) 60S ribosomal protein L12, complete
Length = 1130
Score = 26.9 bits (58), Expect = 2.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -1
Query: 21 KFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDI 54
+F+F+K++ IRE++++ + K S + R+L+I
Sbjct: 857 RFIFKKHETNIREKEKERE--TKSSSSIERDLNI 762
>TC204578 similar to UP|EXL1_ARATH (Q9LZT4) Expansin-like 1 precursor
(At-EXPL1) (Ath-ExpBeta-2.1), partial (7%)
Length = 528
Score = 26.6 bits (57), Expect = 2.6
Identities = 9/22 (40%), Positives = 16/22 (71%)
Frame = +2
Query: 15 RVWKVDKFVFRKNDWKIRERKQ 36
R+WKVD +V+ K+ W +R ++
Sbjct: 251 RIWKVDGWVWWKSRWGVRAMEE 316
>BG363379 similar to GP|2224419|dbj|B ORF67 {Chlorella vulgaris}, partial
(26%)
Length = 360
Score = 26.6 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 21 KFVFRKNDWKIRERKQKNKFVAKKKSK 47
+FVF+K K +++K+K K KKK K
Sbjct: 103 QFVFKKKKKKKKKKKKKKKKKKKKKKK 183
>TC228032
Length = 602
Score = 26.6 bits (57), Expect = 2.6
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 34 RKQKNKFVAKKKSKLTRELDIHGIG--SSKYSFFNSYH 69
RK++ K V +K+SK RE+ + + SS +SFF S+H
Sbjct: 239 RKEEKKSVTEKESK-QREVKLRALVYFSSFFSFFLSFH 349
>BG363363
Length = 401
Score = 26.6 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 21 KFVFRKNDWKIRERKQKNKFVAKKKSK 47
+FVF+K K +++K+K K KKK K
Sbjct: 104 QFVFKKKKKKKKKKKKKKKKKKKKKKK 184
>AI900039 weakly similar to SP|O23920|HPPD_ 4-hydroxyphenylpyruvate
dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase).
[Carrot], partial (16%)
Length = 429
Score = 25.8 bits (55), Expect = 4.4
Identities = 11/36 (30%), Positives = 22/36 (60%)
Frame = -2
Query: 15 RVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTR 50
RVW+ + +R+ +W+ R R+Q+ +++SK R
Sbjct: 167 RVWQRRQGRWRRRNWEWRRRRQRRSRRRERESKERR 60
>AW185120
Length = 446
Score = 25.8 bits (55), Expect = 4.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 3 TKSEVTVIDTSCRVWKVDKFVFRKNDW 29
+ S++ +ID R+ KVD R DW
Sbjct: 248 SNSDIDIIDIKKRIIKVDAIAERAKDW 328
>CO984448
Length = 750
Score = 25.8 bits (55), Expect = 4.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 40 FVAKKKSKLTRELDIHGIGSSKYSFFNSYHCC 71
F KK K+ R H +YSFF + CC
Sbjct: 202 FPLKKSQKVIRPCHDHSRTKLRYSFF*VFLCC 107
>TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (35%)
Length = 598
Score = 25.8 bits (55), Expect = 4.4
Identities = 11/36 (30%), Positives = 22/36 (60%)
Frame = -1
Query: 15 RVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTR 50
RVW+ + +R+ +W+ R R+Q+ +++SK R
Sbjct: 403 RVWQRRQGRWRRRNWEWRRRRQRRSRRRERESKERR 296
>TC212928 similar to GB|AAQ65186.1|34365749|BT010563 At2g17970 {Arabidopsis
thaliana;} , partial (15%)
Length = 579
Score = 25.4 bits (54), Expect = 5.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 20 DKFVFRKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIGSS 60
+K ++ + WK+ + K+ NKF + + R L + I SS
Sbjct: 341 NKLIYFFSQWKLLKDKEVNKFGRRSRQNRFRGLVFNFINSS 463
>TC208369 weakly similar to UP|Q9LQ75 (Q9LQ75) T1N6.22 protein, partial (61%)
Length = 855
Score = 25.4 bits (54), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +2
Query: 2 FTKSEVTVIDTSCRVWKVDKFVFRKNDWKIRERKQKN 38
FT+ EV+ T R+W + F D KIR+ K+ N
Sbjct: 734 FTRQEVSSF*TIFRLWLDEVFHKYLQDKKIRKEKKLN 844
>TC205162 similar to UP|UMP3_ARATH (Q9LEV3) Protein At5g10860, mitochondrial
precursor, partial (83%)
Length = 1142
Score = 25.4 bits (54), Expect = 5.8
Identities = 11/40 (27%), Positives = 22/40 (54%)
Frame = -1
Query: 31 IRERKQKNKFVAKKKSKLTRELDIHGIGSSKYSFFNSYHC 70
I +R + F+ KKKS+ ++ + + + S+ N+ HC
Sbjct: 896 IYDRDVSDSFICKKKSE*EKKY*VTSLCNLSVSYHNNDHC 777
>TC221281 weakly similar to UP|Q6IL51 (Q6IL51) HDC10343, partial (18%)
Length = 948
Score = 25.0 bits (53), Expect = 7.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Frame = -1
Query: 21 KFVFRKNDWKIRERKQKN---------KFVAKKK 45
K + +KN WK ++ K+++ KF++KKK
Sbjct: 483 KLLIKKNTWKFKQVKKQSLLSETLTDIKFISKKK 382
>CO986113
Length = 343
Score = 25.0 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 22 FVFRKNDWKIRERKQKNKFVAKKKSK 47
+VF+K K +++K+K K KKK K
Sbjct: 35 YVFKKKKKKKKKKKKKKKKKKKKKKK 112
>TC211924 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
(CG5442-PB) (LD32469p), partial (9%)
Length = 510
Score = 25.0 bits (53), Expect = 7.5
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +3
Query: 3 TKSEVTVIDTSCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSK 47
T+S T +S + WK +F+K+D K E + K KKK +
Sbjct: 366 TESTSTTALSSSKRWKD---IFKKSDKKNAENNNEEKEKVKKKER 491
>TC220326
Length = 845
Score = 24.6 bits (52), Expect = 9.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 17 WKVDKFVFRKNDWKIRERKQKNKFV 41
WKV K ++RK + K +E+++K +
Sbjct: 752 WKVGKRLYRKANLKRKEKEKKKTII 678
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,194
Number of Sequences: 63676
Number of extensions: 36770
Number of successful extensions: 326
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of query: 71
length of database: 12,639,632
effective HSP length: 47
effective length of query: 24
effective length of database: 9,646,860
effective search space: 231524640
effective search space used: 231524640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146853.8