BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146842.3 + phase: 0 /pseudo
(57 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204702 similar to UP|Q6Q4I2 (Q6Q4I2) Glutamate decarboxylase 4... 71 1e-13
AW757108 52 5e-08
BE800961 homologue to GP|497979|gb|AA glutamate decarboxylase {A... 42 5e-05
BE800775 41 1e-04
BU760591 28 1.3
TC211962 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt ... 27 2.2
TC216107 27 2.8
TC217615 similar to UP|SGPL_ARATH (Q9C509) Sphingosine-1-phospha... 27 2.8
BE474515 27 2.8
TC225961 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt ... 26 3.7
TC225959 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt ... 26 3.7
TC206798 homologue to UP|AX28_SOYBN (P13089) Auxin-induced prote... 26 3.7
BF324544 25 6.3
TC209868 homologue to UP|Q84ZW1 (Q84ZW1) Ent-kaurenoic acid oxid... 25 6.3
TC221422 25 8.2
TC206191 similar to UP|Q8VZD2 (Q8VZD2) At1g75080/F9E10_7, partia... 25 8.2
TC215544 25 8.2
TC218952 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein (At1g787... 25 8.2
>TC204702 similar to UP|Q6Q4I2 (Q6Q4I2) Glutamate decarboxylase 4a , partial
(91%)
Length = 1814
Score = 71.2 bits (173), Expect = 1e-13
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = +3
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSRR 57
F Y LEWDFRL LVKSINVSGHKYGL Y GIGWVIW S++
Sbjct: 828 FIYPELEWDFRLQLVKSINVSGHKYGLVYAGIGWVIWRSKQ 950
>AW757108
Length = 118
Score = 52.4 bits (124), Expect = 5e-08
Identities = 23/32 (71%), Positives = 26/32 (80%)
Frame = +2
Query: 17 FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGI 48
F Y L+WDFRLPLVKSINV+GH YGL Y G+
Sbjct: 23 FLYPDLKWDFRLPLVKSINVTGHTYGLVYPGV 118
>BE800961 homologue to GP|497979|gb|AA glutamate decarboxylase {Arabidopsis
thaliana}, partial (7%)
Length = 386
Score = 42.4 bits (98), Expect = 5e-05
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = +1
Query: 36 VSGHKYGLFYIGIGWVIWCSR 56
VSGHKYGL Y GIGWVIW S+
Sbjct: 274 VSGHKYGLVYAGIGWVIWRSK 336
>BE800775
Length = 448
Score = 40.8 bits (94), Expect = 1e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 34 INVSGHKYGLFYIGIGWVIWCSR 56
INV+GHKYGL Y +GWV+W S+
Sbjct: 2 INVTGHKYGLVYPVVGWVVWTSK 70
>BU760591
Length = 450
Score = 27.7 bits (60), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Frame = +1
Query: 3 KYPVTMDLHAPTSSFP-YKMLEWDFRLPLVK-------SINVSGHKYGLFYIGIGW---V 51
K+PVT+ LHA TSS P + +L F + ++ +G+ G ++G W
Sbjct: 34 KWPVTVQLHA*TSSLPSFSLLLESFSNMAARVW*LIQHMVDGNGNGDGN*FVGCRWSSGF 213
Query: 52 IWC 54
+WC
Sbjct: 214VWC 222
>TC211962 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt responsive
protein, partial (52%)
Length = 344
Score = 26.9 bits (58), Expect = 2.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Frame = +2
Query: 3 KYPVTMDLHAPTSSFP-YKMLEWDF----------RLPLVKSINVSGHKYGLFYIGIGWV 51
K+PVT+ LHA TSS P + +L F + L + + + LF+I W+
Sbjct: 101 KWPVTVQLHA*TSSLPSFSLLLESFSNMAARY*IAHIFLFRIKDFYTKNWLLFFIAC*WI 280
Query: 52 IWC 54
+ C
Sbjct: 281 VEC 289
>TC216107
Length = 726
Score = 26.6 bits (57), Expect = 2.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 37 SGHKYGLFYIGIGWVIWCSR 56
S H + + GIGW WC R
Sbjct: 271 STHNIHILFFGIGWRWWCRR 212
>TC217615 similar to UP|SGPL_ARATH (Q9C509) Sphingosine-1-phosphate lyase
(SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) ,
partial (56%)
Length = 1422
Score = 26.6 bits (57), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 19 YKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
Y + +DF + V SI+V HKYGL G V++
Sbjct: 294 YHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLY 398
>BE474515
Length = 455
Score = 26.6 bits (57), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 19 YKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
Y + +DF + V SI+V HKYGL G V++
Sbjct: 256 YHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLY 360
>TC225961 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt responsive
protein, partial (98%)
Length = 607
Score = 26.2 bits (56), Expect = 3.7
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = +2
Query: 3 KYPVTMDLHAPTSSFP 18
K+PVT+ LHA TSS P
Sbjct: 104 KWPVTVQLHA*TSSLP 151
>TC225959 similar to UP|Q8H9B8 (Q8H9B8) Low temperature and salt responsive
protein, partial (98%)
Length = 601
Score = 26.2 bits (56), Expect = 3.7
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = +2
Query: 3 KYPVTMDLHAPTSSFP 18
K+PVT+ LHA TSS P
Sbjct: 116 KWPVTVQLHA*TSSLP 163
>TC206798 homologue to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
partial (46%)
Length = 719
Score = 26.2 bits (56), Expect = 3.7
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = -2
Query: 16 SFPYKMLEWDFRLPLVKSINV 36
SF + WD +LP+VK +N+
Sbjct: 139 SFMKSFIPWDSQLPMVKELNI 77
>BF324544
Length = 419
Score = 25.4 bits (54), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (50%)
Frame = +2
Query: 11 HAPTSSFPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWV 51
+ P S FP +LEW + + ++ + YG +I G++
Sbjct: 29 YRPESKFPCLLLEWKALKTVFCMVGIN*Y*YGFSFI*YGFI 151
>TC209868 homologue to UP|Q84ZW1 (Q84ZW1) Ent-kaurenoic acid oxidase, partial
(15%)
Length = 716
Score = 25.4 bits (54), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 5 PVTMDLHAPTSSFPYKMLE 23
P++ LH P FPYK E
Sbjct: 147 PLSFSLHIPNPKFPYKYTE 203
>TC221422
Length = 1108
Score = 25.0 bits (53), Expect = 8.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 8 MDLHAPTSSFPYKMLE 23
+ +HAPT S P+K+LE
Sbjct: 597 LQIHAPTRSEPFKILE 644
>TC206191 similar to UP|Q8VZD2 (Q8VZD2) At1g75080/F9E10_7, partial (73%)
Length = 1352
Score = 25.0 bits (53), Expect = 8.2
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 2/39 (5%)
Frame = +3
Query: 5 PVTMDLHAPTSSFPYKMLEWD--FRLPLVKSINVSGHKY 41
PVT L +PTS P + WD + + S N S H +
Sbjct: 576 PVTPPLSSPTSRNPKPIPTWDSIAKASMASSFNHSHHPF 692
>TC215544
Length = 1377
Score = 25.0 bits (53), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 39 HKYGLFYIGIGWVIWCSRR 57
H G Y+ +GW +W +RR
Sbjct: 67 HMVG*EYLTLGWKVWLARR 123
>TC218952 similar to UP|Q9ZV88 (Q9ZV88) F9K20.26 protein
(At1g78700/F9K20_26), partial (45%)
Length = 693
Score = 25.0 bits (53), Expect = 8.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 5 PVTMDLHAPTSSFPYKMLEWD 25
PVT L +PTS P +EWD
Sbjct: 106 PVTPPLSSPTSRTPRINVEWD 168
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.143 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,494,515
Number of Sequences: 63676
Number of extensions: 43033
Number of successful extensions: 304
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of query: 57
length of database: 12,639,632
effective HSP length: 33
effective length of query: 24
effective length of database: 10,538,324
effective search space: 252919776
effective search space used: 252919776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146842.3