BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146819.5 + phase: 0 /partial
(599 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233018 87 2e-17
TC204046 UP|Q39835 (Q39835) Extensin, complete 38 0.015
BE346297 similar to SP|Q40281|RCA_ Ribulose bisphosphate carboxy... 33 0.47
TC214474 homologue to UP|CDC2_VIGAC (Q41639) Cell division contr... 26 0.62
AI443045 32 0.80
TC205206 32 1.0
TC231373 31 1.8
TC209086 similar to GB|BAB09797.1|9759182|AB013388 ATP-dependent... 30 4.0
TC229748 30 4.0
BI119572 30 4.0
TC225604 homologue to UP|SPE1_SOYBN (Q39827) Arginine decarboxyl... 29 5.2
BI425896 29 6.8
BU760718 similar to GP|3641252|gb| leucine-rich receptor-like pr... 29 6.8
TC210671 similar to UP|O71285 (O71285) Tegument protein homolog ... 29 6.8
TC206122 weakly similar to PIR|C86473|C86473 arabinogalactan-pro... 29 6.8
TC215295 similar to UP|Q94IB4 (Q94IB4) WRKY DNA-binding protein ... 28 8.9
AI988440 28 8.9
TC204062 homologue to UP|Q09083 (Q09083) Hydroxyproline-rich gly... 28 8.9
TC206433 28 8.9
>TC233018
Length = 715
Score = 87.4 bits (215), Expect = 2e-17
Identities = 37/67 (55%), Positives = 44/67 (65%)
Frame = +1
Query: 1 IACRDYPHSRHLCGNFPYSSTPHERHCGQCHCYVCDSPAPCLKWGDGLLNTDHCHATDKS 60
+ACRDYPH RHLC FP+++TPH +C C+CYVCDS APC W L+ HC A D
Sbjct: 256 VACRDYPHPRHLCVKFPFTATPHGSYCEMCYCYVCDSAAPCKYWNPSTLS--HCDA-DSD 426
Query: 61 DIWKTLR 67
D WK R
Sbjct: 427 DDWKEER 447
>TC204046 UP|Q39835 (Q39835) Extensin, complete
Length = 1627
Score = 37.7 bits (86), Expect = 0.015
Identities = 74/293 (25%), Positives = 115/293 (38%), Gaps = 2/293 (0%)
Frame = +3
Query: 64 KTLRQDS--LSASTKSGNVVNSQPNHMLPLETARLSPNSVLVNHTSRSTALLPLSANLIP 121
KTL S LS T + + +S LP T L+ +S+L++ ++ S AL S L
Sbjct: 354 KTLTSSSILLSLPTTTETLTSSSILLSLPTTTETLTSSSILLSLSTTS*ALTSSSILLSL 533
Query: 122 QNQAYWNACSSLSSRLQNQVSRSTETHPHSVNLIPQNQAYLPIAMNARSSLGSGLQLQVS 181
+ + SS L +S +T+ S L+ A+ + LQ+QVS
Sbjct: 534 ST----TS*ALTSSSLLLPLSTTTKALTSSSLLLQVPTTAT*EALQIPIPSTTSLQVQVS 701
Query: 182 RSAETHPLSVNLMPQNQASRQITMNAYSSLGSGLQNQASRSTETHPHSVNLMPQNQVSRQ 241
S+ P+S Q S ++ S LQ Q S S+ P S + Q S
Sbjct: 702 SSSLQVPISSTSPIQVPISTTPSLQVQVSTTPSLQVQISPSSLQVPISSSSSIQVPFSST 881
Query: 242 ITMNACSSLGSGLQNQASRSTATHPHSVNLMPQNQVSRQITMNACSSLGSGLQNQASRST 301
++ S + LQ Q S S+ P S Q ++ ++ S LQ Q + +T
Sbjct: 882 TSL*IQISSSTSLQIQVSTSSIQVPISTTPTIQVPITATPSVQVQVSTTPSLQVQVTSTT 1061
Query: 302 ATHPQSVNLIPQNQASQPITINAMPLQNYRLQNQISRPNNAPGCSTASNFTIP 354
P S + + + I+ P LQ QIS + ST S +P
Sbjct: 1062IQVPFS------STTTL*VPISTTP----SLQVQISSSSLQVPISTTSTLQVP 1190
>BE346297 similar to SP|Q40281|RCA_ Ribulose bisphosphate
carboxylase/oxygenase activase chloroplast precursor
(RuBisCO activase) (RA)., partial (38%)
Length = 505
Score = 32.7 bits (73), Expect = 0.47
Identities = 27/82 (32%), Positives = 38/82 (45%)
Frame = -1
Query: 443 NGYGQDGIRITNAINPLLTQPSHSLAYETQPSYQSNSIQNLYGYNNFQGDESLSSYVARL 502
+G G DGIR L+ +E QP +++ L Y N E + RL
Sbjct: 223 SGVGVDGIR-----KKLVNSKDGPPTFE-QPKM---TLEKLLTYGNMLVQEQENVKRVRL 71
Query: 503 NTNRYLNEHQIGSQNENIINSG 524
++YLNE +G+ NEN IN G
Sbjct: 70 -ADKYLNEAALGNANENAINRG 8
>TC214474 homologue to UP|CDC2_VIGAC (Q41639) Cell division control protein 2
homolog (p34cdc2) , complete
Length = 1204
Score = 25.8 bits (55), Expect(2) = 0.62
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 401 TGNPVTMNHVTAPGAPGFSNHINTQYSDRSNAAAATGFSNSRNGYGQD 448
+GN VT HV++ G P N +N S F+ S N + D
Sbjct: 786 SGNEVTPGHVSSFGVPKILNILNNSSISESPGNRGRRFTISANIHPTD 643
Score = 25.0 bits (53), Expect(2) = 0.62
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = -3
Query: 480 IQNLYGYNNFQGDESLSSYVARLNTNRYLNE 510
IQNL N GD S +S V+ L+ Y+N+
Sbjct: 524 IQNLQALVN*YGDLSTNSVVSSLDEELYVND 432
>AI443045
Length = 416
Score = 32.0 bits (71), Expect = 0.80
Identities = 34/119 (28%), Positives = 49/119 (40%), Gaps = 15/119 (12%)
Frame = +3
Query: 232 LMPQNQVSRQITMNACSSLGSGLQNQASRSTATHPHSVNLMP----------QNQVSRQI 281
LMP Q Q+ +++ S LQN + P V L P +Q+ +Q
Sbjct: 21 LMPHVQAKSQLPISS-----SPLQNSSQVQPQNSPQQVPLSPITPSSPLTPLSSQLQQQK 185
Query: 282 TMNAC-----SSLGSGLQNQASRSTATHPQSVNLIPQNQASQPITINAMPLQNYRLQNQ 335
+A +S SGL NQA++ HP PQ Q QP P Q + +Q+Q
Sbjct: 186 LHHAQPXFSRNSTASGLTNQAAKQHPRHPPQ---RPQQQYQQP--GRQHPNQRHNVQSQ 347
Score = 30.8 bits (68), Expect = 1.8
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Frame = +3
Query: 193 LMPQNQASRQITMNAYSSLGSGLQNQASRSTETHPHSVNLMP----------QNQVSRQI 242
LMP QA Q+ +++ S LQN + + P V L P +Q+ +Q
Sbjct: 21 LMPHVQAKSQLPISS-----SPLQNSSQVQPQNSPQQVPLSPITPSSPLTPLSSQLQQQK 185
Query: 243 TMNAC-----SSLGSGLQNQASRSTATHPHSVNLMPQNQVSRQ 280
+A +S SGL NQA++ HP Q RQ
Sbjct: 186 LHHAQPXFSRNSTASGLTNQAAKQHPRHPPQRPQQQYQQPGRQ 314
>TC205206
Length = 2258
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = -3
Query: 89 LPLETARLSPNSVLVNHTSRSTA----LLPLSANLIPQNQAYWNACSSLSSRLQNQ-VSR 143
L ET +P+S + R T L+P+S L+P Q++W LQN +S+
Sbjct: 429 LSRETQPQNPHSRSHDSLCRLTKTEK*LVPMSGRLLP*RQSFW---QQEKENLQNSPISK 259
Query: 144 -----STETHPHSVNLIPQN 158
+ E HPH ++++ QN
Sbjct: 258 VFAVGTAEQHPHKISVLCQN 199
>TC231373
Length = 741
Score = 30.8 bits (68), Expect = 1.8
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 257 QASRSTATHPHSVNLMPQNQVSRQITMNACSSLGSGLQNQASRSTATHPQSVNLIPQNQA 316
+AS T + H N+M + QV I N G+Q++ + Q + + Q +
Sbjct: 342 RASVETERNIHQENMMLKEQVEALIQENVILKRAVGIQHERQKEYEDRNQELKHLKQLVS 521
Query: 317 SQPITINAMPLQNYRLQ---NQISRPNNAPG 344
+ A+ + NY L Q + ++ PG
Sbjct: 522 QYQEQVRALEVNNYALTMHLKQAEQSSSIPG 614
>TC209086 similar to GB|BAB09797.1|9759182|AB013388 ATP-dependent Clp
protease regulatory subunit CLPX {Arabidopsis thaliana;}
, partial (37%)
Length = 1029
Score = 29.6 bits (65), Expect = 4.0
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 3/168 (1%)
Frame = +1
Query: 217 NQASRSTETHPHSVNLMPQNQVSRQITMNACSSLGSGLQNQASRSTATHPHSVNL---MP 273
N + HP N+ Q+ + + C L+ S S H S+ +
Sbjct: 4 NVPEKGARKHPRGDNI----QIDTKNILFICGGAFVDLEKTISESR--HDSSIGFGAPIR 165
Query: 274 QNQVSRQITMNACSSLGSGLQNQASRSTATHPQSVNLIPQNQASQPITINAMPLQNYRLQ 333
N + ++T A +S S LQ S + LIP+ PI ++ L +L
Sbjct: 166 ANMRTGKVTEAAVAS--SLLQTVESSDLIAY----GLIPEFVGRFPILVSLSALTENQLI 327
Query: 334 NQISRPNNAPGCSTASNFTIPNGANNGICQESGPTLARNRYPSNTAAR 381
++ P NA G F + NG + + ++AR NT AR
Sbjct: 328 QVLTEPKNALGKQYKKMFQM-NGVKLHFTENALRSIARKAISKNTGAR 468
>TC229748
Length = 914
Score = 29.6 bits (65), Expect = 4.0
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Frame = +3
Query: 132 SLSSRLQNQVSRSTETHPHSVNLIPQNQAYLPIAMNARSSLGSGLQLQVSRSAETHPLSV 191
SL R+ Q+ + T H + + + PI +S+ G L++ A T S+
Sbjct: 108 SLMDRIMAQLHSNGVTVDHIADCLKRLPFPPPIVSAIKSAHALGCDLRIISDANT--FSI 281
Query: 192 NLMPQNQASRQITMNAYSSLGSG---LQNQAS-RSTETH-----PHSVNLMPQNQVSRQI 242
+ Q+ A + +S + + L NQ R T H PHS L P N +
Sbjct: 282 RTILQHHA----LFHCFSQIHTNPAFLDNQGRLRVTPFHHSTHSPHSCPLCPPNMCKGLV 449
Query: 243 TMNACSSLGSGLQNQASR 260
SSL SG N+ R
Sbjct: 450 IDQIRSSLLSGTGNEEER 503
>BI119572
Length = 522
Score = 29.6 bits (65), Expect = 4.0
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 487 NNFQGDESLSSYVARLNTNRYLNEHQ-----IGSQNENIINSGATVQDVFQQNPHGGIQN 541
++FQGD + V ++ ++ N + +NEN G+ V+ P+G +++
Sbjct: 70 SDFQGDAEFCNEVEIISNLKHRNLVPLRGCCVAEENENYDERGSQRYLVYDYMPNGNLED 249
Query: 542 EGFLARDSSGAENT 555
FL+ DS A+ +
Sbjct: 250 HLFLSTDSQKAKGS 291
>TC225604 homologue to UP|SPE1_SOYBN (Q39827) Arginine decarboxylase (ARGDC)
(ADC) , complete
Length = 3070
Score = 29.3 bits (64), Expect = 5.2
Identities = 26/89 (29%), Positives = 41/89 (45%), Gaps = 1/89 (1%)
Frame = -2
Query: 74 STKSGNVVNSQPNHMLPLETARLSPNSVLVNHTS-RSTALLPLSANLIPQNQAYWNACSS 132
+TKS N +Q +H+LP T + VL+ HT+ + P ++PQ+++ + +
Sbjct: 3069 TTKSMNKTTTQKHHILP--TTF*TSVEVLLRHTTPKILRKRPPPTIMVPQSESLAFSSVT 2896
Query: 133 LSSRLQNQVSRSTETHPHSVNLIPQNQAY 161
LS L Q T L PQN Y
Sbjct: 2895 LSPPLTTQ---PQHTR*SQFKLKPQNNTY 2818
>BI425896
Length = 456
Score = 28.9 bits (63), Expect = 6.8
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 2/53 (3%)
Frame = +1
Query: 53 HCHATDKSDIWKTLRQDSLSASTKSGNVVNSQPNHMLPLETAR--LSPNSVLV 103
H H+T D K+ + ++L STKS N + ++PL +SP+S+LV
Sbjct: 43 HFHSTSSMDQIKSHKIEALIQSTKSHNYIIKLIQLLVPLSVFSFFISPSSLLV 201
>BU760718 similar to GP|3641252|gb| leucine-rich receptor-like protein kinase
{Malus x domestica}, partial (14%)
Length = 445
Score = 28.9 bits (63), Expect = 6.8
Identities = 32/111 (28%), Positives = 50/111 (44%), Gaps = 5/111 (4%)
Frame = -2
Query: 206 NAYSSLGSGLQNQASRSTETHPHSVNLMPQNQVSRQITMNACSSLGSGLQNQASRS-TAT 264
+ +SS G G N+ S S +HP + + QN V I+MN C G+ + Q + +
Sbjct: 384 HGFSSFGRGF-NRLSYSKISHPRTKVHVQQNIVRFHISMNNC---GNTVMVQIREAFCSI 217
Query: 265 HPHSVNLMPQNQVS----RQITMNACSSLGSGLQNQASRSTATHPQSVNLI 311
H + V P Q S +QIT + + + TAT PQ N++
Sbjct: 216 HSYLVPCWPIQQPSLTAMKQITKTSIRHIFINQELAIPSGTAT-PQLNNVL 67
>TC210671 similar to UP|O71285 (O71285) Tegument protein homolog (Fragment),
partial (7%)
Length = 1025
Score = 28.9 bits (63), Expect = 6.8
Identities = 35/151 (23%), Positives = 55/151 (36%)
Frame = +3
Query: 72 SASTKSGNVVNSQPNHMLPLETARLSPNSVLVNHTSRSTALLPLSANLIPQNQAYWNACS 131
+ +T S N LP + P+S+ V S ST P YW A +
Sbjct: 393 AVATSINPTPTSTTNLFLPNNSFCYKPSSLAVPSDSVST----------PYGSHYWEASA 542
Query: 132 SLSSRLQNQVSRSTETHPHSVNLIPQNQAYLPIAMNARSSLGSGLQLQVSRSAETHPLSV 191
S +S + + STE S P N + ++ + ++ A+ H +
Sbjct: 543 SNNSNSSIRSNSSTELRSSS----PLNNIF-----SSWGLADCSISTTTTKEAQIHMME- 692
Query: 192 NLMPQNQASRQITMNAYSSLGSGLQNQASRS 222
N + + N S L S +QNQA S
Sbjct: 693 NHNTEEPKWDEYLHNPISMLASSVQNQAPES 785
>TC206122 weakly similar to PIR|C86473|C86473 arabinogalactan-protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(40%)
Length = 797
Score = 28.9 bits (63), Expect = 6.8
Identities = 13/62 (20%), Positives = 31/62 (49%)
Frame = +2
Query: 70 SLSASTKSGNVVNSQPNHMLPLETARLSPNSVLVNHTSRSTALLPLSANLIPQNQAYWNA 129
S +++ + ++ +PNH+LP + P++ + SR T+L +++ + +
Sbjct: 263 SFISNSNNSSIPGPRPNHLLPSRARPIRPSTRPIRPGSRPTSLRASLRSVLHKQDMHCRH 442
Query: 130 CS 131
CS
Sbjct: 443 CS 448
>TC215295 similar to UP|Q94IB4 (Q94IB4) WRKY DNA-binding protein (Fragment),
partial (34%)
Length = 925
Score = 28.5 bits (62), Expect = 8.9
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +1
Query: 350 NFTIPNGANNGICQESGPTLARNRYPSNTAARM--PLGVRNHAI---QKKRGHGVGTG-N 403
N +P +G + P P+NTAA PL V H+ Q +R G +
Sbjct: 229 NHDVPAARGSGSHSVNRPMPNNASNPTNTAATAISPLQVIQHSDNSHQNQRSQAPPEGQS 408
Query: 404 PVTMNHVTAPGAPGFSNHINTQYS 427
P T+ + +PG+ GFS N S
Sbjct: 409 PFTLEMLQSPGSFGFSGFGNPMQS 480
>AI988440
Length = 399
Score = 28.5 bits (62), Expect = 8.9
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -1
Query: 23 HERHCGQCHCYVCDSPAPCLKW 44
H+ HC H Y +P+ C KW
Sbjct: 195 HKFHCDNSHIYARANPSACAKW 130
>TC204062 homologue to UP|Q09083 (Q09083) Hydroxyproline-rich glycoprotein
precursor, partial (34%)
Length = 722
Score = 28.5 bits (62), Expect = 8.9
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Frame = +3
Query: 174 SGLQLQVSRSAETHPLSVNLMPQNQASRQITMNAYSSLGSGLQNQASRSTETHPHSVNLM 233
+ LQ+QVS S+ P+S + + Q+ ++ SL + S + P S+ +
Sbjct: 204 TSLQVQVSSSSLQVPIS------STSPIQVPISTTPSLQVQVSTTPSLQVQISPSSLQVP 365
Query: 234 PQNQVSRQITMNACSSLGSGLQNQASRSTATHPHSVNLMPQNQVSRQITMNACSSLGSGL 293
+ S Q+ ++ +SL + + S S+ Q +S T+ S L
Sbjct: 366 ISSSSSIQVPFSSTTSL*IQISSSTSLQIQVSTSSI----QVPISTTSTLQVPISSTPSL 533
Query: 294 QNQASRSTATHPQSVNL---IPQNQAS 317
Q Q S S+ + S L IP + S
Sbjct: 534 QVQVSSSSCSFTTSTTLHLCIPSSSIS 614
>TC206433
Length = 1287
Score = 28.5 bits (62), Expect = 8.9
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 274 QNQVSRQITMNACSSLGSGLQNQASRSTATHPQSVNLIPQNQASQPITINAMPLQNYRLQ 333
+ Q + M A SSL L + +RS+ T P++ N + ITI A L NYRL+
Sbjct: 284 KKQAEKNAAMAAWSSLKQ-LAKETARSS-TEPEN------NDELEQITI-ARALLNYRLK 436
Query: 334 NQISRPN-NAP 343
+IS N NAP
Sbjct: 437 EKISMSNSNAP 469
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.125 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,157,936
Number of Sequences: 63676
Number of extensions: 466259
Number of successful extensions: 2149
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of query: 599
length of database: 12,639,632
effective HSP length: 103
effective length of query: 496
effective length of database: 6,081,004
effective search space: 3016177984
effective search space used: 3016177984
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146819.5