TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146818.2 - phase: 0 /pseudo
         (1427 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM307983                                                               44  5e-04
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara...    38  0.036
TC232995                                                               37  0.048
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...    34  0.40
BG238066 similar to SP|P49199|RS8_ 40S ribosomal protein S8. [Ri...    33  0.90
TC214825 similar to UP|RS8_ORYSA (P49199) 40S ribosomal protein ...    33  1.2
BI969381                                                               31  4.5
BI970484                                                               30  5.8
TC215022 homologue to UP|PSAG_ARATH (Q9S7N7) Photosystem I react...    30  5.8
TC215840 homologue to UP|Q41122 (Q41122) Proline-rich protein pr...    30  5.8
TC221428 similar to UP|BRH2_DROME (Q24256) Homeobox B-H2 protein...    30  9.9

>BM307983 
          Length = 406

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 41/119 (34%), Positives = 56/119 (46%), Gaps = 4/119 (3%)
 Frame = +3

Query: 961  VVNGYIRSKDMQMVP*NVSKHVWLLKVLIKLKGLIILKHSPLLPS---YPPLGYCLLLHL 1017
            VV GYI+     M      +  WL +   K  G I+ +H  LL     Y    + L    
Sbjct: 6    VVGGYIQLNIRLMTHWTGIRRGWLQRDTSKPMGSIMRRH--LLSGKNEYSQDHHLLSSKH 179

Query: 1018 FMVGICINLMSITPSCMEIYMKQYI*K-SLKVLLLPNLDKFASSRNPFMVLSKQVGNGL 1075
             +VG CINLM   PS ME + K+Y  +  L ++ +    KFA  R P+MV S  +G GL
Sbjct: 180  NLVGRCINLMLKMPSYMEAWKKKYTWRFHLDMVPVMEEIKFAD*RRPYMVSSSLLGLGL 356


>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
            thaliana}, partial (18%)
          Length = 421

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = -3

Query: 1068 SKQVGNGLRSLLSFFMLRDSLKLMQITHYLLKSLLLPTLWFWFMWMTLF*Q 1118
            SKQVG+G++S L  F  + +    QIT YLL    + +L  W+M MT F Q
Sbjct: 401  SKQVGSGMKS*LICFSKKVTYNQFQITPYLLSPKEILSLHCWYM*MTSFLQ 249


>TC232995 
          Length = 1009

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 21/71 (29%), Positives = 38/71 (52%)
 Frame = +3

Query: 1046 LKVLLLPNLDKFASSRNPFMVLSKQVGNGLRSLLSFFMLRDSLKLMQITHYLLKSLLLPT 1105
            L +  L N   F + +  FMV +K +G+G+   + FF+ ++S ++  I HY  +  ++  
Sbjct: 15   LVLKFLINQTMFINYKRLFMV*NKPLGHGMND*VIFFLKKNSPEVKWIPHYS*RESIMIF 194

Query: 1106 LWFWFMWMTLF 1116
             WF +M M  F
Sbjct: 195  CWFKYMLMI*F 227


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
            vinifera}, partial (34%)
          Length = 409

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 41/127 (32%), Positives = 60/127 (46%), Gaps = 3/127 (2%)
 Frame = +1

Query: 919  PLVIFQLVKILGG*LLCRQR*RLLMQIILGNLLIFLQMLYP*VVNGYIRSKDMQMVP*NV 978
            PL +  L+ IL G  L   + RLL  ++LG+L + L +   *V +G+   K   MV    
Sbjct: 25   PLFVRHLI-ILAGDKLWLMKCRLLKIMVLGSLFLSLLVRRL*VADGFTLLKLGPMVRLIG 201

Query: 979  SKHVWLLKVLIKLKGL--IILKHSPLLPSYPPLGYC-LLLHLFMVGICINLMSITPSCME 1035
             +  W L+   +   L  +IL    LL  + PL  C LL  LF  G  I+L+   PS   
Sbjct: 202  LRLAWSLRATHRYMALNTVILS---LLYFFSPLFVCSLLWRLFDTGPFISLILRMPSSTV 372

Query: 1036 IYMKQYI 1042
            I  + +I
Sbjct: 373  ILRRIFI 393


>BG238066 similar to SP|P49199|RS8_ 40S ribosomal protein S8. [Rice] {Oryza
           sativa}, partial (66%)
          Length = 511

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 805 LSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL-*ILLKIMMRFLMKIHLLILKKGMMKWS 862
           LSI + LLQFPLH+ TL     +   + TLL   +L   + F   ++ ++LK  + +WS
Sbjct: 499 LSIYVALLQFPLHMVTLRGVFCSCSSITTLLCSFVLGSCLLFPTNLNTIVLKIPLFEWS 323


>TC214825 similar to UP|RS8_ORYSA (P49199) 40S ribosomal protein S8, partial
           (95%)
          Length = 860

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/59 (37%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
 Frame = -2

Query: 805 LSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL-*ILLKIMMRFLMKIHLLILKKGMMKWS 862
           LSI L LLQF LH+ TL     +   + TLL   LL   + F   ++ ++LK  + +WS
Sbjct: 496 LSIFLALLQFSLHMVTLFGFFCSCSSITTLLCSFLLGSCLLFPTNLNTIVLKIPLFEWS 320


>BI969381 
          Length = 602

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 2/73 (2%)
 Frame = +2

Query: 1049 LLLPNLDKFASSRNPFMVLSKQVGNGLRSLLSFFMLRDSLKLMQIT--HYLLKSLLLPTL 1106
            L L N     SS   F++LS    N    L +F  +R S +   +   H +  S+ LPT+
Sbjct: 308  LEL*NATSMTSSSALFLLLSLIFPNLANILSNFHSIRRSTREPSLCEPHSIKSSISLPTM 487

Query: 1107 WFWFMWMTLF*QE 1119
              W +W+++ *++
Sbjct: 488  REWHLWVSIL*EK 526


>BI970484 
          Length = 797

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 8/54 (14%)
 Frame = -1

Query: 1063 PFMVLSKQVGNGLRSLLSFFMLRDSLKLMQITHYLLKSLL--------LPTLWF 1108
            PF + S + G  L SL  FF++ +   L+ + H L   L+        LP LWF
Sbjct: 203  PFALASLRAGKNLLSLNLFFLILNCHPLLGLMHLLKAGLIHFLCIYTQLPCLWF 42


>TC215022 homologue to UP|PSAG_ARATH (Q9S7N7) Photosystem I reaction center
            subunit V, chloroplast precursor (PSI-G), partial (63%)
          Length = 1012

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (59%)
 Frame = +2

Query: 1077 SLLSFFMLRDSLKLMQITHYLLKSLLLPTLWFWFM 1111
            ++++  M R SLK+ Q+ H L+ SL    +WF  M
Sbjct: 686  NVINVMMYRFSLKIQQVQHMLI*SLFSAAIWFAIM 790


>TC215840 homologue to UP|Q41122 (Q41122) Proline-rich protein precursor,
           partial (74%)
          Length = 1171

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/118 (22%), Positives = 58/118 (49%)
 Frame = +3

Query: 804 FLSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL*ILLKIMMRFLMKIHLLILKKGMMKWSL 863
           FL +   +   PL + +L++  +T+ LL+    +L+ ++ RF+++++LL       +++L
Sbjct: 282 FLHLLTTITLLPLPLLSLLLTTITITLLL----LLIHLLFRFILQLNLL------FRFTL 431

Query: 864 *PPENPPEVLNHQFTYKIMSVIQQVVITL*QILLVIQLYLLNTVLMLTL*ILRLSPLV 921
                    LN  F + +       +  L ++ L++ L L    L+L L + R +P +
Sbjct: 432 --------QLNLLFRFTLQ------LNLLFRLTLLLNLRLFRFTLLLNLRLFRFTPFL 563


>TC221428 similar to UP|BRH2_DROME (Q24256) Homeobox B-H2 protein (Homeobox
            BarH2 protein), partial (4%)
          Length = 1188

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
 Frame = +2

Query: 1155 PQKAFLSVNANTVWSFLMMLA*LVANQFLLLLIL-----------LYVYLKILGL 1198
            P  A L   ++  WS L++L  L  ++FLLLLI+           LY+++ +L L
Sbjct: 524  PTMAILLALSSIYWSLLLLLLPLPLSRFLLLLIIITTPK*YLLLPLYLFIALLSL 688


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.370    0.167    0.644 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,542,552
Number of Sequences: 63676
Number of extensions: 1224623
Number of successful extensions: 18491
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7607
Number of HSP's successfully gapped in prelim test: 831
Number of HSP's that attempted gapping in prelim test: 10281
Number of HSP's gapped (non-prelim): 9716
length of query: 1427
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1318
effective length of database: 5,698,948
effective search space: 7511213464
effective search space used: 7511213464
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 65 (29.6 bits)