BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.7 - phase: 0 /pseudo
(97 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216444 similar to UP|Q6L5N9 (Q6L5N9) Flowering locus T like pr... 96 2e-21
AW707147 similar to SP|Q9XH44|CET1_ CEN-like protein 1. [Common ... 26 0.18
TC205906 weakly similar to UP|Q6K6F2 (Q6K6F2) Hydroxyproline-ric... 28 0.96
TC205695 27 2.1
BU081640 similar to PIR|T03949|T03 serine-tRNA ligase (EC 6.1.1.... 25 4.8
TC206895 similar to UP|Q944K1 (Q944K1) At1g11870/F12F1_29, parti... 25 4.8
TC220852 25 6.2
TC220814 similar to UP|Q7Y231 (Q7Y231) At1g45150, partial (36%) 25 6.2
TC210358 similar to UP|Q76KU8 (Q76KU8) DNA binding with one fing... 25 8.2
AW186474 similar to SP|P55004|PHY Phytochrome E. [Violet Japane... 25 8.2
>TC216444 similar to UP|Q6L5N9 (Q6L5N9) Flowering locus T like protein,
complete
Length = 860
Score = 96.3 bits (238), Expect = 2e-21
Identities = 45/86 (52%), Positives = 66/86 (76%)
Frame = +2
Query: 1 MSRPLEPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDM 60
M+ ++PL VGRVIG+VVD+F PSV M+V + +K V NG ++ PSI ++ P++ + G +M
Sbjct: 89 MAASVDPLVVGRVIGDVVDMFIPSVNMSVYFGSKHVTNGCDIKPSIAISPPKLTLTG-NM 265
Query: 61 RSAYTLIMTDPDAPSPSDPHLREHLH 86
+ YTL+MTDPDAPSPS+P +RE +H
Sbjct: 266 DNLYTLVMTDPDAPSPSEPSMREWIH 343
>AW707147 similar to SP|Q9XH44|CET1_ CEN-like protein 1. [Common tobacco]
{Nicotiana tabacum}, partial (55%)
Length = 417
Score = 25.8 bits (55), Expect(2) = 0.18
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +3
Query: 76 PSDPHLREHLH 86
PSDP LREHLH
Sbjct: 3 PSDPCLREHLH 35
Score = 23.1 bits (48), Expect(2) = 0.18
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 88 YSRYHRCLFW 97
Y +HRCLFW
Sbjct: 50 YPWHHRCLFW 79
>TC205906 weakly similar to UP|Q6K6F2 (Q6K6F2) Hydroxyproline-rich
glycoprotein-like, partial (27%)
Length = 787
Score = 27.7 bits (60), Expect = 0.96
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +2
Query: 64 YTLIMTDPDAPSPSDPH 80
YT+ MT P P PSD H
Sbjct: 77 YTVFMTPPSTPKPSDDH 127
>TC205695
Length = 1332
Score = 26.6 bits (57), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 21 FNPSVRMNVT--YSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYTLIMT 69
F+PS NV ST V + + + V +KP +GG+ +S +I++
Sbjct: 667 FSPSTHGNVMNYISTSAVTSNEDSVEITVFDKPWFGVGGDPFKSIPAVIIS 515
>BU081640 similar to PIR|T03949|T03 serine-tRNA ligase (EC 6.1.1.11) serS -
maize (fragment), partial (23%)
Length = 426
Score = 25.4 bits (54), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 48 MNKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPHLR 82
M P V IGGED + ++ + P P HL+
Sbjct: 236 MTHPDVPIGGEDCSTIRKMVGSSPKFSFPVKDHLQ 340
>TC206895 similar to UP|Q944K1 (Q944K1) At1g11870/F12F1_29, partial (85%)
Length = 1845
Score = 25.4 bits (54), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 48 MNKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPHLR 82
M P V IGGED + ++ + P P HL+
Sbjct: 572 MTHPDVPIGGEDCSTIRKMVGSSPKFSFPVKDHLQ 676
>TC220852
Length = 989
Score = 25.0 bits (53), Expect = 6.2
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -2
Query: 74 PSPSDPHLREHLH*YSRYHRCLFW 97
PSP EHLH H C W
Sbjct: 304 PSPPQIDCLEHLHLLQAIHPCFHW 233
>TC220814 similar to UP|Q7Y231 (Q7Y231) At1g45150, partial (36%)
Length = 1213
Score = 25.0 bits (53), Expect = 6.2
Identities = 10/22 (45%), Positives = 11/22 (49%)
Frame = +3
Query: 76 PSDPHLREHLH*YSRYHRCLFW 97
PSDPH HL HR + W
Sbjct: 276 PSDPHPNWHLGMRGTQHRAVMW 341
>TC210358 similar to UP|Q76KU8 (Q76KU8) DNA binding with one finger 6
protein, partial (15%)
Length = 864
Score = 24.6 bits (52), Expect = 8.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 65 TLIMTDP-DAPSPSDPHLREHLH*YS 89
TLI T P AP+P P L H H +S
Sbjct: 35 TLITTAPATAPTPPAPELEHHSHSHS 112
>AW186474 similar to SP|P55004|PHY Phytochrome E. [Violet Japanese morning
glory] {Pharbitis nil}, partial (10%)
Length = 449
Score = 24.6 bits (52), Expect = 8.2
Identities = 15/43 (34%), Positives = 20/43 (45%)
Frame = +1
Query: 38 NGHELMPSIVMNKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPH 80
NG + I NK R+D GG + L + PD PS+ H
Sbjct: 73 NGEFIETYITANK-RIDTGGNMLGCFCFLQIVMPDLNQPSEEH 198
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,097,171
Number of Sequences: 63676
Number of extensions: 45069
Number of successful extensions: 334
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of query: 97
length of database: 12,639,632
effective HSP length: 73
effective length of query: 24
effective length of database: 7,991,284
effective search space: 191790816
effective search space used: 191790816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146807.7