BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.4 + phase: 0
(919 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 372 e-103
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 273 3e-73
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 218 6e-71
CF922488 205 8e-53
BQ628592 105 1e-47
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 148 1e-35
NP595172 polyprotein [Glycine max] 144 1e-34
BI498328 122 9e-28
AW184779 115 1e-25
BI316922 101 1e-21
NP395548 reverse transcriptase [Glycine max] 96 6e-20
NP395547 reverse transcriptase [Glycine max] 95 1e-19
NP334778 reverse transcriptase [Glycine max] 95 1e-19
BI321666 82 1e-15
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 63 8e-15
BE804087 79 9e-15
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 75 1e-13
BE802896 66 8e-11
AW570005 65 1e-10
BI317507 62 1e-09
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 372 bits (955), Expect = e-103
Identities = 171/274 (62%), Positives = 210/274 (76%)
Frame = +1
Query: 466 NHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQFLLSREYPPGASNK 525
N D+P I+ +P+H + E D KPWY DIK++++S+EY P ++
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 526 DKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSR 585
DK+TLRRLA+ F + G ILYKRN+DM LRCVD EA ++ +VHEG+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 586 KLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRI 645
K+LRAGYYW+TME DC H RKCHKCQ +AD ++ PPH LNV+SSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 646 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTN 705
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FI+ IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 706 LNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAA 739
LNN ++ +CEEFKI+HHN +PYRP+MN VE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 273 bits (698), Expect = 3e-73
Identities = 127/183 (69%), Positives = 157/183 (85%)
Frame = +1
Query: 737 EAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVE 796
EAANKNIK+I+QKM +Y+DWHEMLP+ALHGYRT+VR+STGATPFS VYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 797 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 856
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 857 TGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 916
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 917 YFA 919
Y+A
Sbjct: 541 YYA 549
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 218 bits (556), Expect(2) = 6e-71
Identities = 105/207 (50%), Positives = 143/207 (68%)
Frame = +2
Query: 388 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 447
++ AID +K L +YGDSALVI+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 448 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYH 507
+ENQMADALATL SMF++ D+P I+ + RP+H + E D KPWY
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 508 DIKQFLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 567
DIK+++ S+EYP AS+ DK+ RRLA+ F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 568 DVHEGTFGTHATGHTMSRKLLRAGYYW 594
+VHEG+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 68.9 bits (167), Expect(2) = 6e-71
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 332 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 384
+ KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>CF922488
Length = 741
Score = 205 bits (521), Expect = 8e-53
Identities = 105/167 (62%), Positives = 125/167 (73%)
Frame = +3
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
M FGL N GATYQR M LF DM+HKE+EVY+DDMIVKS EE+H+ L K+F RLRKY+
Sbjct: 240 MSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRTEEEHLVNLRKLFRRLRKYR 419
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM P TEKQV+GFLGRLNYI
Sbjct: 420 LRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMAKPHTEKQVQGFLGRLNYIV 599
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILV 167
RFIS + ATC P+F LL KNQ + W+ +C AF+ IK L+ P +LV
Sbjct: 600 RFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLINPHVLV 740
>BQ628592
Length = 423
Score = 105 bits (262), Expect(2) = 1e-47
Identities = 48/76 (63%), Positives = 57/76 (74%)
Frame = -1
Query: 137 LRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDESMGCVLGQQDET 196
L KNQ I+WN QEAF+ IK L P +L+PPV GRP ++Y + DESMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 197 GKKEHAIYYLSKKFTD 212
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 104 bits (259), Expect(2) = 1e-47
Identities = 43/61 (70%), Positives = 56/61 (91%)
Frame = -3
Query: 217 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 276
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK A+TG+IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 277 I 277
I
Sbjct: 4 I 2
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 148 bits (373), Expect = 1e-35
Identities = 69/97 (71%), Positives = 82/97 (84%)
Frame = +2
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
M FGL N GATYQR M LFHDM+HKE+EVYVDDMI KS E +H+ L K+F RL+KY+
Sbjct: 110 MAFGLKNTGATYQRAMVALFHDMMHKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQ 289
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 97
L+LNP KCTFGV+SGKLLGFIVSQKGIE+DP+KV+A+
Sbjct: 290 LKLNPTKCTFGVKSGKLLGFIVSQKGIEIDPEKVKAL 400
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 144 bits (364), Expect = 1e-34
Identities = 93/296 (31%), Positives = 148/296 (49%), Gaps = 1/296 (0%)
Frame = +1
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MPFGL NA AT+Q M +F + K V V+ DD+++ S + H+++L + + L++++
Sbjct: 2155 MPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQ 2334
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L KC+FG LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y
Sbjct: 2335 LFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYR 2514
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
RFI GP+ LL+K+ +WN+E + AF +K + E P+L P +P I+
Sbjct: 2515 RFIKSYANIAGPLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETD 2691
Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
+G VLGQ H I Y SKK + + + A+ A + RHYL+
Sbjct: 2692 ASGIGVGAVLGQNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLG 2853
Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQ-KAIKGSILADHLA 295
+ + + +K + +++ T + W YD FK + K K + AD L+
Sbjct: 2854 NKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 93.2 bits (230), Expect = 5e-19
Identities = 137/555 (24%), Positives = 232/555 (41%), Gaps = 14/555 (2%)
Frame = +1
Query: 346 NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 405
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H +
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHYLLGNKF 2862
Query: 406 ALVINQIKGEWETHHAKLIPYRD-YARRLLTYFTKVELHHIPRDENQMADALATLSSMFR 464
+ +Q + + P + + + L Y K+E + P +NQ ADAL S MF
Sbjct: 2863 IIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMFM 3027
Query: 465 VNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQFLLSREYPPGASN 524
+ W++ P +F +++ ++ + +KQ L Y GA
Sbjct: 3028 LA-WSE-----------PHSIF-----LEELRARLISDP----HLKQ--LMETYKQGAD- 3135
Query: 525 KDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMS 584
AS + + +LY + D V++ +E +++ + H G HA G T +
Sbjct: 3136 ---------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRT 3276
Query: 585 RKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMW---GIDM 641
L+A +YW M+ D + +KC CQ +P L + P P +W +D
Sbjct: 3277 LARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMDF 3450
Query: 642 IGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIRNNIICRYGVPSKIIT 700
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I++
Sbjct: 3451 ITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVS 3624
Query: 701 DNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGVVEAANKNIKRIVQKMVTTY-RD 756
D + Q L FK++ SS Y PQ +G E NK ++ ++ + +
Sbjct: 3625 DRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKG 3795
Query: 757 WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 816
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3796 WVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVREQ 3951
Query: 817 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVL-----KRRISQQPD 871
D+ L+ + +++ + R Q MK DKK F+ G+ VL R+ S
Sbjct: 3952 LTDRDALLAKLKIN-LTRAQQV---MKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLR 4119
Query: 872 PRGKWTPNYEGPYVV 886
K + Y GP+ V
Sbjct: 4120 KNQKLSMRYFGPFKV 4164
>BI498328
Length = 335
Score = 122 bits (305), Expect = 9e-28
Identities = 63/118 (53%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 281 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYV-KSKDCEEPLIGEGPDPNSKWGL 339
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM + + K E + +KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 340 VFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 397
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>AW184779
Length = 432
Score = 115 bits (287), Expect = 1e-25
Identities = 50/74 (67%), Positives = 60/74 (80%)
Frame = +1
Query: 539 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTME 598
L +ILYKRN+DMVLLRCVD EAEQ++ +VHEG+FGTHA H M++K+LR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 599 HDCYQHARKCHKCQ 612
DC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 85.1 bits (209), Expect = 1e-16
Identities = 49/114 (42%), Positives = 60/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 591 GYYWMTMEHDCY-------------QHARKCHKCQIYADKIHVPPHALNVISSPWPF--- 634
G W T +H C+ R H C + VP ++ +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 635 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 682
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI316922
Length = 405
Score = 101 bits (252), Expect = 1e-21
Identities = 47/135 (34%), Positives = 81/135 (59%)
Frame = +3
Query: 568 DVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNV 627
++H G G H+ M+ ++LR GYY TM C ++ +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 628 ISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNN 687
I +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 688 IICRYGVPSKIITDN 702
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 96.3 bits (238), Expect = 6e-20
Identities = 50/127 (39%), Positives = 73/127 (57%)
Frame = +1
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
+PFGL NA T+Q M +F D++ K +EV++DD V E ++ L + +R +
Sbjct: 376 IPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQRCVETN 555
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L LN +KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+ +
Sbjct: 556 LVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQARFYR 735
Query: 121 RFISHMT 127
RFI T
Sbjct: 736 RFIKDFT 756
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 95.1 bits (235), Expect = 1e-19
Identities = 50/127 (39%), Positives = 72/127 (56%)
Frame = +1
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MPFGL NA T+QR M +F DM+ K +EV++DD + L K+ +R K
Sbjct: 376 MPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQRCEKSN 555
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L LN +KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG + +
Sbjct: 556 LVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGHVGFYR 735
Query: 121 RFISHMT 127
RFI T
Sbjct: 736 RFIKDFT 756
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = +3
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
M FGL N GATY R M LF DM+HKE+E YVD+MI KS EE+H+ L +F +LRKY+
Sbjct: 216 MSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNLQNLFGQLRKYR 395
Query: 61 LRLNPDKCTFGV 72
LRLNP KC FG+
Sbjct: 396 LRLNPRKCVFGL 431
>BI321666
Length = 430
Score = 82.0 bits (201), Expect = 1e-15
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 583 MSRKLLRAGYYWMTMEHDCYQHARKCHKCQ---IYADKIHVPPHALNVISSPWPFSMWGI 639
+S +L++ +Y ++ D Y HA+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 640 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKII 699
D +G P SN +ILV +DY +KWVEA + ++V KF++ I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 700 TDNGTNLNN 708
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 62.8 bits (151), Expect(2) = 8e-15
Identities = 42/171 (24%), Positives = 74/171 (42%)
Frame = +1
Query: 98 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 157
R P ++ +R F G ++ RF+ + + P+ +L++KN W ++ ++AF +K
Sbjct: 88 RMAPTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLK 267
Query: 158 NYLLEPPILVPPVEGRPLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 217
L + P+L P + + + VL Q H I Y S+K Y
Sbjct: 268 EKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG------HPIAYFSEKLHSATLNY 429
Query: 218 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 268
+K AL A + H+LV + S +KYI K+ + + A+W
Sbjct: 430 PTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 36.6 bits (83), Expect(2) = 8e-15
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 79 GFIVSQKGIEVDPDKVRAIREMPAP 103
GF+V + G+++DP+K++AI+E P P
Sbjct: 29 GFVVGRNGVQMDPEKIKAIQEWPPP 103
>BE804087
Length = 160
Score = 79.0 bits (193), Expect = 9e-15
Identities = 36/53 (67%), Positives = 43/53 (80%)
Frame = +2
Query: 737 EAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEA 789
EAANKNIK+ + KM +Y+DWHEM +ALH YRT VR+STGATP+S VYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 75.5 bits (184), Expect = 1e-13
Identities = 41/122 (33%), Positives = 69/122 (55%), Gaps = 1/122 (0%)
Frame = -3
Query: 711 VQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYR 769
+ AL +++ + H S+PY PQ NG E +N+ IKRI++K+V R DW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 770 TTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 829
T ++ G +P+ V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 830 DA 831
+A
Sbjct: 16 EA 11
>BE802896
Length = 416
Score = 65.9 bits (159), Expect = 8e-11
Identities = 39/128 (30%), Positives = 61/128 (47%)
Frame = -2
Query: 112 FLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVE 171
FLG + RFI P+ LL+K +ND+C+ AFD +K L+ PI+ P
Sbjct: 412 FLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDW 233
Query: 172 GRPLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAA 231
P + + ++G VL Q+ + K IYY S+ + YT EK A+ +A
Sbjct: 232 TAPFELMCDASNYALGVVLAQKID--KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFAL 59
Query: 232 KRLRHYLV 239
++ YL+
Sbjct: 58 EKFHSYLL 35
>AW570005
Length = 413
Score = 65.1 bits (157), Expect = 1e-10
Identities = 42/141 (29%), Positives = 62/141 (43%)
Frame = -2
Query: 101 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 160
P P+T + +RGFL + RFI A P+ LL K+ VW+ E AF ++KN +
Sbjct: 412 PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS-FVWSPEADVAFQALKNVV 236
Query: 161 LEPPILVPPVEGRPLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 220
+L P +P + MG VL Q+ H I + SK+F R +
Sbjct: 235 TNTLVLALPDFTKPFTVETDASGSDMGAVLSQEG------HPIAFFSKEFCPKLVRSSTY 74
Query: 221 EKTCCALAWAAKRLRHYLVNH 241
A+ K+ R YL+ H
Sbjct: 73 VHELAAITNVVKKWRQYLLGH 11
>BI317507
Length = 359
Score = 62.0 bits (149), Expect = 1e-09
Identities = 33/114 (28%), Positives = 58/114 (49%)
Frame = -1
Query: 34 DMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDK 93
++++ S D + H+ +LT + + L+K +L N KC F + + LG ++S+ + +D +K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174
Query: 94 VRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWND 147
V+++ E P P+ K+V FL Y +FI L KN W D
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLTKNDGFKWGD 12
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,736,205
Number of Sequences: 63676
Number of extensions: 611604
Number of successful extensions: 2875
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2861
length of query: 919
length of database: 12,639,632
effective HSP length: 106
effective length of query: 813
effective length of database: 5,889,976
effective search space: 4788550488
effective search space used: 4788550488
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146807.4