BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.3 - phase: 0 /pseudo
(1604 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 602 e-172
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 598 e-171
TC232995 223 4e-58
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 220 3e-57
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 219 8e-57
TC213445 118 3e-46
BM143109 165 1e-40
AI959950 162 1e-39
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 158 2e-38
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 150 3e-36
CO983516 150 4e-36
AI855982 138 2e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 127 4e-29
CO982036 124 3e-28
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 124 4e-28
BI321712 120 6e-27
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 118 2e-26
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 117 4e-26
BG508993 113 8e-25
BU548243 112 1e-24
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 602 bits (1551), Expect = e-172
Identities = 295/598 (49%), Positives = 416/598 (69%)
Frame = +1
Query: 1007 KSIQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEE 1066
K ++E + + A+S AE N ++ D + Q +P + + HP+E
Sbjct: 2953 KDVEEDVRTSGDNVADTAKSAENAE------NSDSATDEPNINQPDKRPSIRIQKMHPKE 3114
Query: 1067 LIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVW 1126
LIIG + TRS + S +S IE K V+EAL+D+ WI AMQEEL QF+RN+VW
Sbjct: 3115 LIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVW 3294
Query: 1127 DLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEA 1186
+LVP+P N+IGTKW+F+NK NE+G +TR KARLVAQGY+Q E +D+ ETFAPVARLE+
Sbjct: 3295 ELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLES 3474
Query: 1187 IRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGL 1246
IRLLL A LYQMDVK AFLNG + EE YV+QP GF D HPDHVY+LKK++YGL
Sbjct: 3475 IRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGL 3654
Query: 1247 KQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKD 1306
KQAP+AWY+RL+ FL + + +G +D TLF + ++++I QIYVDDI+FG + + +
Sbjct: 3655 KQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRH 3834
Query: 1307 FSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1366
F + MQ EF+MS++GEL +FLG+Q+ Q ++ +++ Q+KY K ++KKF +E+ TP
Sbjct: 3835 FVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAP 4014
Query: 1367 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKR 1426
LSK++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++ + SHL VKR
Sbjct: 4015 THLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKR 4194
Query: 1427 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQ 1486
I +Y+ GT++ G++Y D L+G+CDAD+AG +RKSTSG C +LG NLISW SK+Q
Sbjct: 4195 ILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQ 4374
Query: 1487 ATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSR 1546
+++STAEA YI+A S C+QL+WMK L++Y + +++ ++CDN +AI +SKNP+ HSR
Sbjct: 4375 NCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSR 4554
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHFVSD 1604
KHI+I+HH+IR V ++ ++ +DTE Q ADIFTK L +F+ ++ L + + D
Sbjct: 4555 TKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGICLLED 4728
Score = 97.1 bits (240), Expect = 6e-20
Identities = 98/372 (26%), Positives = 163/372 (43%), Gaps = 18/372 (4%)
Frame = +1
Query: 2 MLVHQYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVT 61
+L ++E +MK++E I + + + L + V KILRSLP R+ KVT
Sbjct: 385 LLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVT 564
Query: 62 AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 121
AIEEA+D+ + V++L+ SL+ E+ L++ T KKSK++A S E E
Sbjct: 565 AIEEAQDICNMRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGE 705
Query: 122 EESPDGDSDEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK- 170
E+ D D+DE + + +L + L + R+QK F ++GS + KK D+K
Sbjct: 706 EDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKKSDEKP 882
Query: 171 ------GCFNCKKPGHFIADCPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDS 224
C C+ GH A+CP + +KQ K + +D +S
Sbjct: 883 SHSKGIQCHGCEGYGHIKAECP------------------THLKKQRKGLSVCRSDDTES 1008
Query: 225 ESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSL 284
E SD + A++ +ED ++ S+I EL S +EL
Sbjct: 1009EQESDSDR---------------DVNALTGRFESAEDSSDTDSEITFDELAISYRELCIK 1143
Query: 285 FEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQE 343
E + LK+ +L +++ E+ ELKG +++ E+ KS+ +
Sbjct: 1144SEKILQQEAQLKKVIANLEAEKEAHEEEI----SELKGEVGFLNSKLENMTKSI-----K 1296
Query: 344 KCDKGSGNKHEI 355
+KGS E+
Sbjct: 1297MLNKGSDMLDEV 1332
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 598 bits (1543), Expect = e-171
Identities = 295/593 (49%), Positives = 413/593 (68%)
Frame = +1
Query: 1007 KSIQEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEE 1066
K ++E + + A+S AE S +ES + IQ HP+E
Sbjct: 2950 KDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQ------KMHPKE 3111
Query: 1067 LIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVW 1126
LIIG + TRS + S +S IE K V+EAL+D+ WI AMQEEL QF+RN+VW
Sbjct: 3112 LIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVW 3291
Query: 1127 DLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEA 1186
+LVP+P N+IGTKW+F+NK NE+G +TR KARLVAQGY+Q E +D+ ETFAPVARLE+
Sbjct: 3292 ELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLES 3471
Query: 1187 IRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGL 1246
IRLLL A LYQMDVK AFLNG + EEVYV+QP GF D HPDHVY+LKK++YGL
Sbjct: 3472 IRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGL 3651
Query: 1247 KQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKD 1306
KQAP+AWY+RL+ FL + + +G +D TLF + ++++I QIYVDDI+FG + + +
Sbjct: 3652 KQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRH 3831
Query: 1307 FSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1366
F + MQ EF+MS++GEL +FLG+Q+ Q ++ +++ Q++Y K ++KKF +E+ TP
Sbjct: 3832 FVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAP 4011
Query: 1367 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKR 1426
LSK++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++ + SHLT VKR
Sbjct: 4012 THLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKR 4191
Query: 1427 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQ 1486
I +Y+ GT++ G++Y + L+G+CDAD+AG +RKSTSG C +LG NLISW SK+Q
Sbjct: 4192 ILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQ 4371
Query: 1487 ATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIFCDNTAAICLSKNPILHSR 1546
+++STAEA YI+A S C+QL+WMK L++Y + +++ ++CDN +AI +SKNP+ HSR
Sbjct: 4372 NCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSR 4551
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
KHI+I+HH+IR V ++ ++ +DTE Q ADIFTK L +F+ ++ L +
Sbjct: 4552 TKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
Score = 99.8 bits (247), Expect = 9e-21
Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 17/373 (4%)
Frame = +1
Query: 2 MLVHQYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVT 61
+L ++E +MK++E I + + + L + V KILRSLP R+ KVT
Sbjct: 385 LLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVT 564
Query: 62 AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 121
AIEEA+D+ + V++L+ SL+ E+ L++ KKSK++A S E E
Sbjct: 565 AIEEAQDICNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGE 705
Query: 122 EESPDGDSDEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKKEDQK-- 170
E+ D D+DE + + +L + L + ++QK + R K K+ D K
Sbjct: 706 EDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPS 885
Query: 171 -----GCFNCKKPGHFIADCPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSE 225
C C+ GH IA+CP K+ +K L D +SE
Sbjct: 886 HSKGIQCHGCEGYGHIIAECP-------------------THLKKHRKGLSVCQSDTESE 1008
Query: 226 SGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLF 285
SD +D D A + T +ED ++ S+I EL S ++L
Sbjct: 1009QESD---SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKS 1143
Query: 286 EHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEK 344
E + LK+ DL +++ E+ ELKG +++ E+ KS+ +
Sbjct: 1144EKILQQEAQLKKVIADLEAEKEAHKEEI----SELKGEVGFLNSKLENMTKSI-----KM 1296
Query: 345 CDKGSGNKHEIAL 357
+KGS E+ L
Sbjct: 1297LNKGSDTLDEVLL 1335
>TC232995
Length = 1009
Score = 223 bits (569), Expect = 4e-58
Identities = 104/173 (60%), Positives = 139/173 (80%)
Frame = +2
Query: 1221 VKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1280
V+QPPGFE P+HVYKL+K++YGLKQAP+AWY+RLSNFL++ +F RG+VDTTLF +
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1281 KKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYV 1340
DIL+VQIYVDDIIFGSTN SLCK+FS MQ EF+MSMMGELK+FLG+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1341 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1393
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 220 bits (561), Expect = 3e-57
Identities = 118/247 (47%), Positives = 160/247 (64%), Gaps = 2/247 (0%)
Frame = +3
Query: 1226 GFEDLKHPDHVYKLKKSI--YGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKD 1283
GFED + P HV+ + + G+K +F + D R K+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMK--------G*VHF*FQMDSPEE*RTPHYSERLKKET 485
Query: 1284 ILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQT 1343
LI+ IYVDDIIFG+T+ +CK+F +LM+D F+ SM GELKF LG+QI Q G+++HQ
Sbjct: 486 FLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQE 665
Query: 1344 KYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDIL 1403
KYTK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRPDI+
Sbjct: 666 KYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIV 845
Query: 1404 FSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIE 1463
F VCLCARFQS + SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++E
Sbjct: 846 FVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVE 1025
Query: 1464 RKSTSGN 1470
RKSTS N
Sbjct: 1026 RKSTSRN 1046
Score = 54.3 bits (129), Expect = 4e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +2
Query: 1238 KLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDI 1284
K +YGLKQA +AWY+RLS+FL+ N F RG D LFR+ K ++
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 219 bits (558), Expect = 8e-57
Identities = 104/153 (67%), Positives = 127/153 (82%)
Frame = -3
Query: 1111 LAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQE 1170
+AMQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G + R KARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1171 DIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDL 1230
IDY ET+APVARLE IR+LL+Y LYQMDVK AFLNG+I+EEVYV+QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1231 KHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIK 1263
P HVYKL+K++YGLKQAP+AWY+R+SNFL++
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC213445
Length = 705
Score = 118 bits (296), Expect(2) = 3e-46
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = +1
Query: 1461 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQI 1520
+ +R+STS C F+G L+SW SK+Q ++ +STAEA YISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1521 NANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1558
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 87.0 bits (214), Expect(2) = 3e-46
Identities = 39/68 (57%), Positives = 51/68 (74%)
Frame = +2
Query: 1388 MIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1447
MI S LYL+ SRP I+FSVC+C R+Q++ +ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1448 KLIGFCDA 1455
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 165 bits (418), Expect = 1e-40
Identities = 80/137 (58%), Positives = 106/137 (76%)
Frame = +1
Query: 1223 QPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1282
QPP ++ + P+HV+KLKK +YGLKQA +AWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1283 DILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQ 1342
DIL+VQIYVDDIIFGSTN SLCK FS+ MQ+EF+MSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1343 TKYTKELLKKFKLEDCK 1359
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>AI959950
Length = 466
Score = 162 bits (410), Expect = 1e-39
Identities = 82/130 (63%), Positives = 102/130 (78%)
Frame = -1
Query: 1112 AMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQED 1171
AMQEEL+QFQ+N+V LV P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQE
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1172 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLK 1231
IDY +TFA VARLE I +LLS+A + LYQMDVK AFLNG+I++EVYV+QPPGFE+
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1232 HPDHVYKLKK 1241
HV+KL K
Sbjct: 31 LHQHVFKLNK 2
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 158 bits (400), Expect = 2e-38
Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 4/222 (1%)
Frame = +1
Query: 1380 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGL 1439
VD +R +IGSL YL SRP+I F+V L +RF R SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1440 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1496
L+ KS L+G+ D+D+ D + KST G + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1497 *YISAASCCTQLLWMKHQLEDYQINANI-IPIFCDNTAAICLSKNPILHSRAKHIEIKHH 1555
Y++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1556 FIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1597
+IR V KG + +++ E Q AD+ TKP+ V RF I L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 150 bits (380), Expect = 3e-36
Identities = 73/111 (65%), Positives = 88/111 (78%)
Frame = +3
Query: 1096 ELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVT 1155
E K ++EA+ DD WI+ MQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G +
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1156 RKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1206
R KARLVA+GY+Q+E IDY ET+APVARLEAIR+LL+YA LYQMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 150 bits (379), Expect = 4e-36
Identities = 72/120 (60%), Positives = 91/120 (75%)
Frame = +2
Query: 1178 FAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1237
F PVARLE+IRLLL A LYQMDVK AFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1238 KLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1297
+LKK++YGLKQAP+AWY+RL+ L + + +G +D TLF + ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 138 bits (347), Expect = 2e-32
Identities = 75/161 (46%), Positives = 100/161 (61%)
Frame = +2
Query: 1064 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRN 1123
P + IIG TR + + + +S+IE K ++EA+ DD WI+AMQEELNQF+RN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1124 DVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVAR 1183
+VW LV KP +I TKWVFRNKL+E + KARLVA+GY+Q + +DY T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1184 LEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQP 1224
L I + LSY LY A L+G++ EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 127 bits (319), Expect = 4e-29
Identities = 63/131 (48%), Positives = 90/131 (68%)
Frame = -2
Query: 1129 VPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIR 1188
VP P K +G +WV+ K+ GEV R KARLVA+GY+Q IDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1189 LLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQ 1248
L L+ A L+Q+D+K AFL+G +EE++Y++QPPGF V KL +S+YGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1249 APKAWYDRLSN 1259
+P+AW+ + S+
Sbjct: 46 SPRAWFGKFSH 14
>CO982036
Length = 674
Score = 124 bits (311), Expect = 3e-28
Identities = 72/207 (34%), Positives = 121/207 (57%), Gaps = 4/207 (1%)
Frame = -2
Query: 1289 IYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1348
+YVD II GS+ +L ++ + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1349 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1408
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP+I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1409 CARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1465
+F S+ +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1466 STSGNCQFLGENLIS-WASKRQATIAM 1491
STSG FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 124 bits (310), Expect = 4e-28
Identities = 62/154 (40%), Positives = 94/154 (60%), Gaps = 1/154 (0%)
Frame = +2
Query: 1448 KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQ 1507
+L G+CDAD+AG ++R+STSG C F+G NL+SW SK+Q +A S+AEA Y S A +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1508 LLWMKHQLEDYQINANI-IPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGIL 1566
L+W+K L++ + + + ++CDN AA+ ++ NP+ H R KHIEI HFIR + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1567 DIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMH 1600
+FI + Q DI TK L + + L +
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475
>BI321712
Length = 399
Score = 120 bits (300), Expect = 6e-27
Identities = 56/124 (45%), Positives = 85/124 (68%)
Frame = -3
Query: 1289 IYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1348
+YVDD+IF N S+ ++F K M +EF+M+ MG + ++LGI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1349 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1408
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1409 CARF 1412
+R+
Sbjct: 19 VSRY 8
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 118 bits (295), Expect = 2e-26
Identities = 58/134 (43%), Positives = 85/134 (63%)
Frame = +3
Query: 1091 LLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNE 1150
L S+ T+ EAL GW AM +E+ + N W+LVP P K +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1151 QGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAF 1210
G+V R KARLVA+GY+Q I+Y +TF+PV L +RL L+ A L+Q+D+K AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1211 LNGVIEEEVYVKQP 1224
L+G +EE++Y++QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 117 bits (293), Expect = 4e-26
Identities = 55/122 (45%), Positives = 85/122 (69%)
Frame = +1
Query: 1285 LIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTK 1344
LIV +YVDD++ +A L ++F + M F+M+ +G + +FLGI+I QS+ V + Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1345 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1404
Y KE+LKKF++E+CK ++TPM+ +K D +D+ YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1405 SV 1406
++
Sbjct: 553 AI 558
>BG508993
Length = 374
Score = 113 bits (282), Expect = 8e-25
Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = +1
Query: 1432 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1491
KGT + GL Y S +YKL+GFCD+D+AGD +RKST+G F+G+ + +W+SK+Q + +
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1492 STAEA*YISAASCCTQLLWMKHQLEDYQ-INANIIPIFCDNTAAICLSKNPILHSRAKHI 1550
T EA Y++A SC +W++ LE+ Q + I+ DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1551 EIK 1553
+ +
Sbjct: 364 DTR 372
>BU548243
Length = 599
Score = 112 bits (281), Expect = 1e-24
Identities = 62/147 (42%), Positives = 82/147 (55%)
Frame = -1
Query: 1453 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMK 1512
CDA +A D + +ST G+ FLG NLISW S++Q A S+ EA Y S A +L W++
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 1513 HQLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFID 1572
L + QI I CDN +A+ ++ N + HSR KH+EI F+ V L I I
Sbjct: 410 ALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1573 TEHQWADIFTKPLSVERFDFIKKNLNM 1599
QWA I TKPLS RF F+K L +
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,064,012
Number of Sequences: 63676
Number of extensions: 901073
Number of successful extensions: 8131
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 7729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8060
length of query: 1604
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1494
effective length of database: 5,635,272
effective search space: 8419096368
effective search space used: 8419096368
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146807.3