BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.10 - phase: 0
(234 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG508280 56 2e-08
TC222199 54 6e-08
BI317622 50 9e-07
BI315644 40 0.001
TC222651 homologue to UP|Q9B8W1 (Q9B8W1) NADH dehydrogenase subu... 32 0.25
TC216808 30 0.72
BE661601 weakly similar to GP|12483839|gb| p6.9 {Heliocoverpa ar... 28 3.6
TC224316 weakly similar to UP|Q70LF5 (Q70LF5) Sucrose-sucrose-1-... 27 8.0
TC223637 27 8.0
TC217690 similar to UP|Q944Q8 (Q944Q8) AT5g46340/MPL12_14, parti... 27 8.0
>BG508280
Length = 418
Score = 55.8 bits (133), Expect = 2e-08
Identities = 32/85 (37%), Positives = 47/85 (54%), Gaps = 3/85 (3%)
Frame = +1
Query: 87 IITGCGDFLNVPLLGTRGGINYNPELAMRQFGFPMKAKPINLATSPEF---FYYSNAPTG 143
++ CG F NVPL+GTRG I+YNP LA++Q G+PM P+ +P F +N T
Sbjct: 70 VLISCGGFPNVPLMGTRGCISYNPVLAIKQLGYPM*GVPLEDELAPVISRGFNKTNVETL 249
Query: 144 QREAFIGAWSKVCRKSVKHLGVRSG 168
Q+ AW + +K + G +G
Sbjct: 250 QKVR--KAWEVLQKKDKELRGSNNG 318
>TC222199
Length = 691
Score = 53.9 bits (128), Expect = 6e-08
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Frame = +2
Query: 8 HSK-NPVPTLLADTYHAIHDRTLKGRGYILCCVPLLYRWFISHL---------PSSFH-- 55
HSK +PV +LAD + + R K I+CC+P L W +SHL P H
Sbjct: 350 HSKESPVVAVLADLFDTFNRRYEKSSARIICCLPALCVWLVSHLFQQDTRRPCPLLSHRS 529
Query: 56 -DNSENWSYSQRIMALTPNEVVWITPTAQVKE-IITGCGDFLNVPLLGTRG 104
+ Q + + + W + KE ++ CG + N+PL+GTRG
Sbjct: 530 CTEKRRIDWDQLLAGIGGRTISWFPRWKEGKEGVLFSCGRYPNIPLVGTRG 682
>BI317622
Length = 370
Score = 50.1 bits (118), Expect = 9e-07
Identities = 33/104 (31%), Positives = 44/104 (41%), Gaps = 15/104 (14%)
Frame = -2
Query: 12 PVPTLLADTYHAIHDRTLKGRGYILCCVPLLYRWFISHL---------PSSFH-----DN 57
P+ +LAD Y + R K I+CC P LY W +SHL P H
Sbjct: 306 PIVAMLADLYDTFNRRCEKSSTRIVCCTPALYVWLVSHLFRQEVRHACPLESHCSCTEKG 127
Query: 58 SENWSYSQRIMALTPNEVVWITPTAQVK-EIITGCGDFLNVPLL 100
ENW Q + V W + + ++ CG FLNVPL+
Sbjct: 126 GENW--GQLLANKEGASVNWFPRWKEGRTRVLISCGVFLNVPLM 1
>BI315644
Length = 421
Score = 40.0 bits (92), Expect = 0.001
Identities = 17/31 (54%), Positives = 23/31 (73%)
Frame = +3
Query: 102 TRGGINYNPELAMRQFGFPMKAKPINLATSP 132
TRG INYNP LA+RQ G+PM+ P + + +P
Sbjct: 276 TRGCINYNPVLAIRQLGYPMRGVPSDESITP 368
Score = 27.3 bits (59), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +1
Query: 30 KGRGYILCCVPLLYRWFISHL 50
K I+CC LY W +SHL
Sbjct: 4 KSSARIVCCALALYVWLVSHL 66
>TC222651 homologue to UP|Q9B8W1 (Q9B8W1) NADH dehydrogenase subunit 6,
partial (8%)
Length = 1006
Score = 32.0 bits (71), Expect = 0.25
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = -1
Query: 43 YRWFISHLPSSFHDNSENWSYSQRIMA-LTPNEVVWIT---------PTAQVKEIITGCG 92
Y W I +L FH N+EN +YS +I+ ++++I+ +K I+
Sbjct: 628 YLWLIKYL*KDFHINNENQTYSYKILIYFLSTKLIFISIK*ILKTNLKIIYIK*ILKMNL 449
Query: 93 DFLNVPLLGTRGGINYNPELAMRQF 117
+ L +PL G N+N ++++R F
Sbjct: 448 ETLLLPL-----GSNFNNDISLRDF 389
>TC216808
Length = 1144
Score = 30.4 bits (67), Expect = 0.72
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Frame = +3
Query: 1 MNAIEIFH--SKNPVPTLLADTYHAIHDRTLKGRGYILCCVPLLYRWFISHL 50
++A FH ++PV +LA Y K I+CC LY W +SHL
Sbjct: 672 IDAFLAFHHGKESPVVAILA-MYDTFDRGCEKSSARIVCCALALYVWLVSHL 824
>BE661601 weakly similar to GP|12483839|gb| p6.9 {Heliocoverpa armigera
nucleopolyhedrovirus G4}, partial (56%)
Length = 658
Score = 28.1 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 185 LVKVRRELEEKDEL-LMRDSKRARGRCNFYARYCGSD 220
+V +R E++ +E +RD++ G CN R C +D
Sbjct: 536 IVFIRTEMQRSEEARTLRDTQSENGECNLGRRICDTD 646
>TC224316 weakly similar to UP|Q70LF5 (Q70LF5)
Sucrose-sucrose-1-fructosyltransferase (Fragment) ,
partial (4%)
Length = 794
Score = 26.9 bits (58), Expect = 8.0
Identities = 21/94 (22%), Positives = 36/94 (37%), Gaps = 10/94 (10%)
Frame = +2
Query: 55 HDNSENWSYSQRIMALTPNEVVWITPTAQVKEIITGCGDFLNVPLLGTR----------G 104
H+ ++WS + + + + T V EI+ F+ PL T
Sbjct: 122 HEAGQDWSQVAQSTWDVVSLPLKVVQTMAVMEIVHAAVGFVRSPLGSTLMQVSSRLWLVW 301
Query: 105 GINYNPELAMRQFGFPMKAKPINLATSPEFFYYS 138
IN ++ QFGFP+ L P + +Y+
Sbjct: 302 AINVLCPVSRYQFGFPLMVASWGLVEVPRYSFYA 403
>TC223637
Length = 794
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +1
Query: 35 ILCCVPLLYRWFISHLPSSFHDNSENWSYSQR 66
ILC + L + +I+ DNS NW Y R
Sbjct: 184 ILCFINLYLKKYINIFYDLIEDNSRNWVYGLR 279
>TC217690 similar to UP|Q944Q8 (Q944Q8) AT5g46340/MPL12_14, partial (37%)
Length = 1342
Score = 26.9 bits (58), Expect = 8.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 34 YILCCVPLLYRWFISHLPSSFHDNSENW 61
++L +P+ W I + + FH N E W
Sbjct: 103 FLLGVIPVFVSWIIGMIYAYFHPNVEKW 186
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,875,979
Number of Sequences: 63676
Number of extensions: 169458
Number of successful extensions: 919
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of query: 234
length of database: 12,639,632
effective HSP length: 94
effective length of query: 140
effective length of database: 6,654,088
effective search space: 931572320
effective search space used: 931572320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146807.10