BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146806.4 + phase: 0 /pseudo
(796 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 288 5e-78
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ... 186 3e-47
BU549069 172 4e-43
TC211627 72 3e-26
BI425021 116 3e-26
CO982196 114 2e-25
BI424213 92 1e-18
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 80 3e-15
AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m... 71 2e-12
BM084967 67 3e-11
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 66 7e-11
TC233069 62 5e-10
TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial ... 62 1e-09
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 60 4e-09
CA820403 weakly similar to GP|13273463|gb| pol protein integrase... 56 4e-09
BQ299538 56 5e-08
TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 54 3e-07
TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 52 1e-06
BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza... 51 2e-06
AW830191 45 1e-04
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 288 bits (738), Expect = 5e-78
Identities = 185/541 (34%), Positives = 272/541 (50%), Gaps = 3/541 (0%)
Frame = +1
Query: 258 PGKANVVADVLSRKTLHMYALMVKELELIEQFGELSLVSELTPDGVRLGMLKLTSNILEE 317
PGK N AD LSR M+ L E I LEE
Sbjct: 2980 PGKDNQAADALSR----MFMLAWSEPHSI---------------------------FLEE 3066
Query: 318 IKNGQKEDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHRSS 377
++ D L + QG +L ++DRV +P ++ +IL E H S
Sbjct: 3067 LRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSP 3246
Query: 378 LSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEWT 437
+ H G T+ LK F+WP M++++ ++ CL+CQ++ + P+GL+QPL +P+
Sbjct: 3247 IGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQV 3426
Query: 438 WDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRLHG 497
W+ ++MDF+ LP S I V++DRLTK HF+P+K + +AE ++ IV+LHG
Sbjct: 3427 WEDVAMDFITGLP-NSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHG 3603
Query: 498 IPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVLE 557
IP SIVSDRD FTS FW+ L GT L++SSAYHPQ+DGQ+E + LE LR E
Sbjct: 3604 IPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYE 3783
Query: 558 QGVSWDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQET 617
W + LP EF YN ++H S+ M PF ALYGR T S + E + +
Sbjct: 3784 HPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDR 3963
Query: 618 TEKVKMIQEKMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHAL-KCRKLTPR 676
+ ++ + +Q K DK+R D+ FQ+GD V + + P L K +KL+ R
Sbjct: 3964 DALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMR 4143
Query: 677 FVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLTV 736
+ GPF V+ K+G VAY++ L PS + +H VFHV +L+ + A L V + V
Sbjct: 4144 YFGPFKVLAKIGDVAYKLEL-PSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPV 4320
Query: 737 ETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEPESGMMVSYRSCFLQ--VIFEG 794
PV+I + +I + V W + ATWE + SY + L+ V+F+G
Sbjct: 4321 -MQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKG 4497
Query: 795 E 795
E
Sbjct: 4498 E 4500
>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
partial (9%)
Length = 410
Score = 186 bits (472), Expect = 3e-47
Identities = 87/136 (63%), Positives = 111/136 (80%)
Frame = -3
Query: 637 SYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTPRFVGPFDVIEKVGVVAYRIAL 696
SYHDKRRKD+EF+VGDHVFL V P TGVG ALK KLTP F+GPF +++KV VAY+IAL
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229
Query: 697 PPSLSNLHNVFHVPKLRKYVHDASHVIRVDDLEVRDNLTVETWPVRIEDRELKRLRGKEI 756
PPSL++LHNVFHV ++ KY++D SH++ +D ++V++NL ET P+RI+D K LRGKEI
Sbjct: 228 PPSLTSLHNVFHVSQIHKYINDPSHMVNLDVVQVKENLAHETLPLRIKDMRTKHLRGKEI 49
Query: 757 VLVKVIWVGPTGESAT 772
+LVKVIW G +GE AT
Sbjct: 48 LLVKVIWGGASGEEAT 1
>BU549069
Length = 615
Score = 172 bits (437), Expect = 4e-43
Identities = 84/132 (63%), Positives = 102/132 (76%)
Frame = -1
Query: 656 LWVNPVTGVGHALKCRKLTPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKY 715
L V P TGVG ALK RKLTP F+G F ++++ VAY+IALPPSLSNLHNVFHV +LR Y
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVFHVSQLRMY 436
Query: 716 VHDASHVIRVDDLEVRDNLTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWEP 775
+HD SHV+++DD++V++NLT ET P+RIEDR K LR KE LVKVIW G +GE ATWE
Sbjct: 435 IHDPSHVVKLDDVQVKENLTYETLPLRIEDRRTKHLRRKENPLVKVIWGGTSGEDATWEL 256
Query: 776 ESGMMVSYRSCF 787
ES M V+Y S F
Sbjct: 255 ESQMRVAYPSLF 220
>TC211627
Length = 1034
Score = 71.6 bits (174), Expect(2) = 3e-26
Identities = 39/78 (50%), Positives = 44/78 (56%)
Frame = +2
Query: 510 FTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVLEQGVSWDECLPLI 569
F S W L GTKL S+AYHPQTDGQTE + LE LRA V + W + L L
Sbjct: 5 FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184
Query: 570 EFTYNNSFHSSIRMAPFE 587
E YN S HS I +PFE
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238
Score = 66.2 bits (160), Expect(2) = 3e-26
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Frame = +3
Query: 627 KMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTPRFVGPFDVIEK 686
+++ Q + K D R+D+ F +GD V++ + P KL+ RF GP+ + +
Sbjct: 357 RLQKYQDSMKRIADSHRRDLTFNIGDWVYVRL*PYRQTSIQSTYTKLSKRFYGPYQIQAR 536
Query: 687 VGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDA---SHVIRVDDLEVRDNLTVETWPVRI 743
VG VAYR+ LPP+ S +H +FHV L+ VH ++ + ++ V+ P++
Sbjct: 537 VGQVAYRLQLPPT-SKIHPIFHVSLLK--VHHGPIPPELLALPPFSTTNHPLVQ--PLQF 701
Query: 744 EDRELKRLRGKEIVLVKVIWVGPTGESATWE 774
D ++ I V V W E TWE
Sbjct: 702 LDWKMDESTTPPIPQVLVQWTNLAPEDTTWE 794
>BI425021
Length = 426
Score = 116 bits (291), Expect = 3e-26
Identities = 61/141 (43%), Positives = 87/141 (61%)
Frame = -1
Query: 430 PLFVPEWTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKSTHFVPIKTSMSIARLAEIYI 489
PL VP+ W+ +SMDF+ LP TI+V+V+R +K H + TS + +A +++
Sbjct: 420 PLPVPQRPWEDLSMDFIVGLPPYH-GHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASLFL 244
Query: 490 EQIVRLHGIPSSIVSDRDPRFTSNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLED 549
+++LHG P SIVSDRDP F S+FW+ L GT L +SSAYHPQTDGQTE + +E
Sbjct: 243 NIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVIEQ 64
Query: 550 LLRACVLEQGVSWDECLPLIE 570
LRA V + + +P +E
Sbjct: 63 YLRAFVHGRPRNLGRFIPWVE 1
>CO982196
Length = 812
Score = 114 bits (284), Expect = 2e-25
Identities = 62/164 (37%), Positives = 94/164 (56%)
Frame = +1
Query: 351 LMFRDRVCVPDVLDLKRQILDEGHRSSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFVYA 410
L F+DR+ + +L E S L H G + ++ + + +W GMKK ++V A
Sbjct: 322 LYFKDRLVLSKNSTKIPLLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYVAA 501
Query: 411 CLVCQKSMIEHQRPSGLMQPLFVPEWTWDSISMDFVGALPKTSKSFDTIWVIVDRLTKST 470
C +C+++ P+GL+ L +P W ISMDF+G LPK ++ D I V+VDRLTK
Sbjct: 502 CEICRRNKTSTLSPAGLL*LLPIPTKVWTDISMDFIGGLPK-AQGKDNILVVVDRLTKYA 678
Query: 471 HFVPIKTSMSIARLAEIYIEQIVRLHGIPSSIVSDRDPRFTSNF 514
HF + + +AE++I+++VRLHG P+SIVSD F S F
Sbjct: 679 HFFALSHPYTAKEVAELFIKELVRLHGFPASIVSDXXRLFMSLF 810
>BI424213
Length = 426
Score = 91.7 bits (226), Expect = 1e-18
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = +1
Query: 512 SNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVLEQGVSWDECLPLIEF 571
S+FW++L A LGTKL S+ HPQTDGQT+ +SL LLRA + SWDE LP +EF
Sbjct: 4 SHFWKTLWAKLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEF 183
Query: 572 TYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQETTEKVKMIQEKMK 629
YN H + + +PFE +YG TPL + + +E VK + E++K
Sbjct: 184 AYNRGVHRTTKQSPFEVVYGFNPLTPLDLIPLPLDTSFIHKEGESRSEFVKKMHERVK 357
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 80.1 bits (196), Expect(2) = 3e-15
Identities = 43/117 (36%), Positives = 68/117 (57%), Gaps = 1/117 (0%)
Frame = -2
Query: 403 EIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEWTWDSISMDFV-GALPKTSKSFDTIWV 461
E A+ + CL CQ + E +R L+ PL VP W+ +S+DF+ G LP + I V
Sbjct: 350 ECAQMLPNCLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLLPYHVHT--AILV 177
Query: 462 IVDRLTKSTHFVPIKTSMSIARLAEIYIEQIVRLHGIPSSIVSDRDPRFTSNFWESL 518
+VD +K H + +S + +A ++I+ + +LHG+P S+VSD D F S+FW+ L
Sbjct: 176 VVDHFSKGIHLGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHFWQEL 6
Score = 20.4 bits (41), Expect(2) = 3e-15
Identities = 7/26 (26%), Positives = 13/26 (49%)
Frame = -1
Query: 381 HPGATKMYQDLKRLFWWPGMKKEIAE 406
H G K L + +W GM+ ++ +
Sbjct: 405 HTGIAKTLA*LSKNIYWFGMRTDVTQ 328
>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
(3%)
Length = 464
Score = 71.2 bits (173), Expect = 2e-12
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 324 EDLELVDRVTLVNQGKGGDFRLDENDVLMFRDRVCVPDVLDLKRQILDEGHRSSLSIHPG 383
E L + ++ N GK GD+ L +DV++++ R+ +P+ L + I+ E H S + H G
Sbjct: 148 ESLMKIYQLCSNNAGKSGDYVL-HHDVIIWKGRIMLPNDSQLLKMIMTESHASKVGGHAG 324
Query: 384 ATKMYQDLKRLFWWPGMKKEIAEFVYACLVCQKSMIEHQ-RPSGLM 428
T+ + F+WP M+++I +FV C++CQ++ + H P+GL+
Sbjct: 325 TTRTIVRINAQFYWPKMREDIMKFVQECVICQQAKVTHSLLPAGLL 462
>BM084967
Length = 426
Score = 67.0 bits (162), Expect = 3e-11
Identities = 38/117 (32%), Positives = 61/117 (51%)
Frame = -2
Query: 349 DVLMFRDRVCVPDVLDLKRQILDEGHRSSLSIHPGATKMYQDLKRLFWWPGMKKEIAEFV 408
D+++ + +P +L E H S H G TK L F W G++K++ +FV
Sbjct: 353 DLILKNGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSENFTWIGIRKDVEQFV 174
Query: 409 YACLVCQKSMIEHQRPSGLMQPLFVPEWTWDSISMDFVGALPKTSKSFDTIWVIVDR 465
ACL CQ + E Q+ +GL+ PL VP W+ +S +F+ L + + + I V+V R
Sbjct: 173 AACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGLSE-FRGYTAILVVVGR 6
>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 730
Score = 65.9 bits (159), Expect = 7e-11
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +1
Query: 640 DKRRKDIEFQVGDHVFLWVNPVTGVGHALKCR-KLTPRFVGPFDVIEKVGVVAYRIALPP 698
+KRR+DIE+ VGD VFL + P A + KL+PRF PF V KVG +AY++ LP
Sbjct: 112 NKRRRDIEYVVGD*VFLKMQPYRRRSLAKRINEKLSPRFYAPFQVFNKVGTIAYKLDLPS 291
Query: 699 SLSNLHNVFHVPKLRKYVHDASHV 722
+ +H VFHV L+K + H+
Sbjct: 292 HI-KIHPVFHVSLLKKASPNLYHL 360
>TC233069
Length = 881
Score = 61.6 bits (148), Expect(2) = 5e-10
Identities = 33/81 (40%), Positives = 47/81 (57%)
Frame = +2
Query: 400 MKKEIAEFVYACLVCQKSMIEHQRPSGLMQPLFVPEWTWDSISMDFVGALPKTSKSFDTI 459
M +++ + + AC CQ++ Q+ GL+QPL +P W ISMDFV LP S I
Sbjct: 224 MARDVCDHICACTNCQQNKYSTQK*FGLLQPLPIP*QVWKDISMDFVTHLP-PS*GKKMI 400
Query: 460 WVIVDRLTKSTHFVPIKTSMS 480
WVIVD TK +HF+ + +S
Sbjct: 401 WVIVDCWTKYSHFLSLPAHLS 463
Score = 21.2 bits (43), Expect(2) = 5e-10
Identities = 13/51 (25%), Positives = 23/51 (44%)
Frame = +1
Query: 347 ENDVLMFRDRVCVPDVLDLKRQILDEGHRSSLSIHPGATKMYQDLKRLFWW 397
++ +L++ + +P +L+ +L E H S L H G L F W
Sbjct: 67 QDGLLLYCTHLFIPLESELRAILLGECHDSLLGGHSGIKGTLNRLFVSFAW 219
>TC232772 weakly similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (7%)
Length = 729
Score = 62.0 bits (149), Expect = 1e-09
Identities = 45/157 (28%), Positives = 73/157 (45%), Gaps = 4/157 (2%)
Frame = +1
Query: 564 ECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQETTEKVKM 623
ECLP +EF YN + HS+ + PFE +Y TPL + + E +K
Sbjct: 1 ECLPHVEFAYNRAVHSTTQHFPFEVVYDFNPLTPLDSLPLSNISGFKHKDAHAKVEYIKR 180
Query: 624 IQEKMKAS-QST*KSY---HDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCRKLTPRFVG 679
+ E+ K +SY +K RK + + D ++WV+ + KL PR G
Sbjct: 181 LHEQAKTQIAKKNESYVKQTNKNRKKVVLEPSD--WVWVHMRKERFPKQRMSKLQPRGDG 354
Query: 680 PFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYV 716
PF V+E++ AY+I +P + + F++ L +V
Sbjct: 355 PFQVLERINYNAYKIDIPGEY-EVSSSFNIADLTPFV 462
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 60.1 bits (144), Expect = 4e-09
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 636 KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCR-KLTPRFVGPFDVIEKVGVVAYRI 694
K+Y D+ R+ + VGD V+L + P A K KL+PRF GP+ + +++G+VA+ +
Sbjct: 6 KAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFEL 185
Query: 695 ALPPSLSNLHNVFHVPKLRKYV 716
LPP+ +H VFH L+K V
Sbjct: 186 DLPPA-RKIHPVFHASLLKKAV 248
>CA820403 weakly similar to GP|13273463|gb| pol protein integrase region
{Ginkgo biloba}, partial (52%)
Length = 421
Score = 55.8 bits (133), Expect(2) = 4e-09
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Frame = -3
Query: 488 YIEQIVRLHGIPSSIVSDRDPRFT-SNFWESLQAALGTKLSLSSAYHPQTDGQTERTIQS 546
+I++ V+LHG SSIVSD D F S FW L GTKL S AYHPQ D T+ +
Sbjct: 335 FIKEAVKLHGCSSSIVSDWDRLFLIS*FWTELFKMEGTKLKFSLAYHPQPDSHTKVVNRC 156
Query: 547 LEDLLRACVLEQGV-----------------SWDECLPLIEFTYN 574
+E L+ + SW C+ L+ F+ N
Sbjct: 155 IEMNLQCLTTSKRKQWPNVSVGLSILV*HQ*SWHHCMYLVSFSLN 21
Score = 23.9 bits (50), Expect(2) = 4e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 459 IWVIVDRLTKSTHFVPIKTSMSIARLAEIYIEQI 492
I VIV R TK HFV + ++E+ ++++
Sbjct: 421 IMVIVYRFTKYAHFVVLSHPYLAKEVSEVLLKKL 320
>BQ299538
Length = 426
Score = 56.2 bits (134), Expect = 5e-08
Identities = 34/86 (39%), Positives = 46/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 512 SNFWESLQAAL----GTKLSLSSAYHPQTDGQTERTIQSLEDLLRACVLEQGVSWDECLP 567
SNF E + + GT L +S++YHP DGQT LE LR V +Q + L
Sbjct: 99 SNFCEFILEGIVKLPGTYLKMSTSYHP*IDGQTVN--HCLETFLRCFVADQPKM*VQWLS 272
Query: 568 LIEFTYNNSFHSSIRMAPFEALYGRR 593
E+ YN +FH+S PFE +YGR+
Sbjct: 273 WAEYWYNTNFHASTGTTPFEVVYGRK 350
Score = 51.2 bits (121), Expect = 2e-06
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +1
Query: 475 IKTSMSIARLAEIYIEQIVRLHGIPSSIVSDRDPRFTSNFWESL 518
+K S LAEI+ +++V LHG+P+S++SD DP F S+FW+ L
Sbjct: 1 LKHPYSARVLAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132
>TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (5%)
Length = 761
Score = 53.9 bits (128), Expect = 3e-07
Identities = 39/126 (30%), Positives = 58/126 (45%), Gaps = 1/126 (0%)
Frame = +1
Query: 650 VGDHVFLWVNPVT-GVGHALKCRKLTPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFH 708
+GD V + + P G KLT R+ GPF+V E++G V YR+ L + S +H VFH
Sbjct: 4 IGDWVLVKLRPHRQGSASETTYSKLTKRYYGPFEVQERLGKVVYRLKL-TAHSRIHPVFH 180
Query: 709 VPKLRKYVHDASHVIRVDDLEVRDNLTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTG 768
V L+ +V D L V P+ + D +L +V V W +
Sbjct: 181 VSLLKAFVGD-PETTHAGPLPVMRTEEATNTPLTVIDSKLVPADNGPRRMVLVQWPSASR 357
Query: 769 ESATWE 774
+ A+WE
Sbjct: 358 QDASWE 375
>TC212592 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 664
Score = 51.6 bits (122), Expect = 1e-06
Identities = 38/115 (33%), Positives = 56/115 (48%)
Frame = +2
Query: 660 PVTGVGHALKCRKLTPRFVGPFDVIEKVGVVAYRIALPPSLSNLHNVFHVPKLRKYVHDA 719
P+TG KL+ RF GPF V+E+VG VAYR+ LP + LH VFH L+ + +
Sbjct: 62 PITG--------KLSKRFFGPFQVVERVGKVAYRLQLPVD-AKLHPVFHCSLLKPFQGNP 214
Query: 720 SHVIRVDDLEVRDNLTVETWPVRIEDRELKRLRGKEIVLVKVIWVGPTGESATWE 774
+ D+ +V V + R + + + V V W G + + ATWE
Sbjct: 215 PDTAAPLPPTLFDHQSVIAPLVILATRTV----NDDDIEVLVQWQGLSPDDATWE 367
>BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 424
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 628 MKASQST*KSYHDKRRKDIEFQVGDHVFLWVNPVTGVGHALKCR-KLTPRFVGPFDVIEK 686
++ +QS + + R+ + VGD V+L + P + KLT RF GP+ V+ +
Sbjct: 25 LERAQSLMVKHANNHRRPHDINVGDWVYLKIRPHRQGSMPPRLHPKLTARFYGPYLVMRQ 204
Query: 687 VGVVAYRIALPPSLSNLHNVFHVPKLRK 714
VG VA+++ L PS + +H VFHV +L++
Sbjct: 205 VGAVAFQLQL-PSEARIHPVFHVSQLKR 285
>AW830191
Length = 372
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +3
Query: 562 WDECLPLIEFTYNNSFHSSIRMAPFEALYGRRCRTPLCWFESGESAMLAPEVVQETTEKV 621
W + L EF +N ++++S+++ PF+ LYG C P + + A EV T ++
Sbjct: 39 WPKRLSWAEFWFNTNYNNSLKLTPFKVLYG--CDPPHL-LKGAIISSTAEEVNVMTNDRD 209
Query: 622 KMIQE---KMKASQST*KSYHDKRRKDIEFQVGDHVFLWVNP 660
+M+ + + +Q+ K Y D+ R+ I VGD V+L + P
Sbjct: 210 QMLHDLKGNLAKAQNQMK-YADRSRRSIPLNVGDWVYLKLQP 332
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.340 0.151 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,887,673
Number of Sequences: 63676
Number of extensions: 439700
Number of successful extensions: 2900
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 2869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2887
length of query: 796
length of database: 12,639,632
effective HSP length: 105
effective length of query: 691
effective length of database: 5,953,652
effective search space: 4113973532
effective search space used: 4113973532
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146806.4