TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146794.13 + phase: 0 /pseudo
         (818 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                     87  4e-17
BI317507                                                               48  2e-05
BE806882 similar to GP|27764548|gb polyprotein {Glycine max}, pa...    47  3e-05
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    45  1e-04
BM142940                                                               39  2e-04
NP395548 reverse transcriptase [Glycine max]                           44  3e-04
NP395547 reverse transcriptase [Glycine max]                           43  5e-04
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ...    41  0.002
CF922488                                                               41  0.002
BU549069                                                               35  0.17
TC215346 homologue to UP|Q8LP18 (Q8LP18) Cullin-like protein1, p...    34  0.23
NP334778 reverse transcriptase [Glycine max]                           32  0.87
BE348096                                                               29  7.3
TC215115 homologue to PIR|T02313|T02313 endoplasmic reticulum in...    29  9.6

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 41/83 (49%), Positives = 60/83 (71%)
 Frame = +1

Query: 19   FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
            F+C MNKIF   L  FV+VF DDILIYS S ++H +HL+ +LQ LK+ +++A+LSKC F 
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367

Query: 79   LSEVSFLGHIISDSGIVVTHQKL 101
             +EV +LGH +S  G+ + + K+
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKV 2436


>BI317507 
          Length = 359

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 36/61 (58%)
 Frame = -1

Query: 41  DILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLGHIISDSGIVVTHQK 100
           +ILIYS   + H  HL  +L VLK++++ A   KC F  + + +LGH+IS   + +   K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174

Query: 101 L 101
           +
Sbjct: 173 V 171


>BE806882 similar to GP|27764548|gb polyprotein {Glycine max}, partial (3%)
          Length = 153

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = -1

Query: 18  AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQV 62
           +F+C MN IF   L  +V+VF DDIL+YS +  EH  HL+++ +V
Sbjct: 135 SFQCLMNHIFQHALRKYVLVFFDDILVYSSTWHEHLCHLEVVFKV 1


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 43/79 (54%)
 Frame = +2

Query: 23  MNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEV 82
           M  +FH  +   + V++DD++  SR+E EH  +L  +   L++ ++    +KC F +   
Sbjct: 155 MVALFHDMMHKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSG 334

Query: 83  SFLGHIISDSGIVVTHQKL 101
             LG I+S  GI +  +K+
Sbjct: 335 KLLGFIVSQKGIEIDPEKV 391


>BM142940 
          Length = 422

 Score = 38.5 bits (88), Expect(2) = 2e-04
 Identities = 18/34 (52%), Positives = 24/34 (69%)
 Frame = -1

Query: 35  VVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKM 68
           +  F  DILIYS +E +H +HLKI+LQ  KE K+
Sbjct: 260 ICFFSYDILIYSINEGKHEKHLKIVLQTFKEAKL 159



 Score = 25.4 bits (54), Expect(2) = 2e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 67  KMYAKLSKCEFWLSEVSFLGHIISDSGIVVTHQKL 101
           K+ A   KC F   +  +L H+IS  G+    +KL
Sbjct: 165 KVGANRKKCSFGCKKFEYLVHMISVKGVSADPKKL 61


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/83 (32%), Positives = 41/83 (48%)
 Frame = +1

Query: 19  FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
           F+  M  IF   ++  + VF+DD  ++  S E   + L+++LQ   E  +     KC F 
Sbjct: 409 FQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQRCVETNLVLNWEKCHFM 588

Query: 79  LSEVSFLGHIISDSGIVVTHQKL 101
           + E   LGH IS  GI V   K+
Sbjct: 589 VREGIVLGHKISTRGIEVDQTKI 657


>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/86 (31%), Positives = 41/86 (47%)
 Frame = +1

Query: 16  SDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKC 75
           S  F+  M  IF   ++  + VF+DD   +  S      +L+ +LQ  ++  +     KC
Sbjct: 400 STTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQRCEKSNLVLNWEKC 579

Query: 76  EFWLSEVSFLGHIISDSGIVVTHQKL 101
            F + E   LGH IS  GI V  +KL
Sbjct: 580 HFMVQEGIVLGHKISKRGIEVVKEKL 657


>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
           partial (9%)
          Length = 410

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 28/73 (38%), Positives = 36/73 (48%)
 Frame = -2

Query: 662 ELSRQA*ERPWISGS**CVSKSRSCDRCWSCLEIEEVDAEVYWPVSDIRKSWNSGI*SGF 721
           ELSRQ  ERP I G * C+ KS   D  WS  EI +     Y    + +KS   GI +  
Sbjct: 409 ELSRQEEERPRIRGW*SCILKSHPIDWGWSSFEILKTHTSFYRSFPNSQKS*FCGISNCI 230

Query: 722 ATTSFEFA*CVSC 734
              S+  + C+SC
Sbjct: 229 TPISY*PSQCLSC 191


>CF922488 
          Length = 741

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 21/67 (31%), Positives = 39/67 (57%)
 Frame = +3

Query: 35  VVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLGHIISDSGI 94
           + V++DD+++ SR+EEEH  +L+ + + L++ ++    +KC F +     L  I S  GI
Sbjct: 321 IEVYMDDMIVKSRTEEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGI 500

Query: 95  VVTHQKL 101
            V   K+
Sbjct: 501 EVDSNKV 521


>BU549069 
          Length = 615

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 25/74 (33%), Positives = 36/74 (47%)
 Frame = -3

Query: 682 KSRSCDRCWSCLEIEEVDAEVYWPVSDIRKSWNSGI*SGFATTSFEFA*CVSCVATSEVC 741
           +S S D  WS  EI +    +Y    +  KS + GI +     +F  + C+SCV+T  V 
Sbjct: 613 ESHSKDWGWSSTEIPKTHTSLYRSFPNS*KSXSCGIPNCITPITF*SSQCLSCVSTPYVY 434

Query: 742 IGSIACDSEG*CAS 755
             SI+C   G*  S
Sbjct: 433 P*SISCGQIG*RTS 392


>TC215346 homologue to UP|Q8LP18 (Q8LP18) Cullin-like protein1, partial (13%)
          Length = 1050

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 22/85 (25%), Positives = 42/85 (48%)
 Frame = +3

Query: 55  HLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLGHIISDSGIVVTHQKLMQ*HNGRLRSQLQ 114
           H +++L+VL    +Y    + +  LS +   G +I     ++ + ++      +L+S L 
Sbjct: 735 HCRLLLRVLPVNALYDNSEEMDLILSHLGIFGFVILRRDRIILYFQVFF-FPAKLKSILS 911

Query: 115 RLEVFWVW*VITTDL*KDFRSWHFH 139
            L V W W +I  ++*+DF    FH
Sbjct: 912 -LFVLWQWKLILGEI*EDFEFEQFH 983


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score = 32.3 bits (72), Expect = 0.87
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 12  LRIFSDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAK 71
           L+ F   +   M  +F   +   +  ++D+++  SR EEEH  +L+ +   L++ ++   
Sbjct: 228 LKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNLQNLFGQLRKYRLRLN 407

Query: 72  LSKCEFWL 79
             KC F L
Sbjct: 408 PRKCVFGL 431


>BE348096 
          Length = 445

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 205 VCIKAVEDS*MELSYA*FGVGCCGFCVENLEAL 237
           +C    +DS  +LSYA*  VG  G C+  LEAL
Sbjct: 169 LCSSIGQDSLKDLSYA*SRVGSHGVCLHILEAL 71


>TC215115 homologue to PIR|T02313|T02313 endoplasmic reticulum insertion
           protein F13P17.9 - Arabidopsis thaliana {Arabidopsis
           thaliana;} , complete
          Length = 1786

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 26/82 (31%), Positives = 39/82 (46%), Gaps = 3/82 (3%)
 Frame = +3

Query: 44  IYSRSEEEHAEHLKIMLQVLK---EKKMYAKLSKCEFWLSEVSFLGHIISDSGIVVTHQK 100
           ++SRS      +LK  L + K   E++ Y   S C F L  VSFL        +  T Q+
Sbjct: 168 LFSRS------YLKFRLLIGKCHLERRSYIL*SLCSFSLFAVSFL-------CMEYTQQQ 308

Query: 101 LMQ*HNGRLRSQLQRLEVFWVW 122
           ++    G + S LQ +E+ W W
Sbjct: 309 VLIHSIGCVLSLLQTVELLWSW 374


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.372    0.167    0.652 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,460,546
Number of Sequences: 63676
Number of extensions: 487421
Number of successful extensions: 6294
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 3748
Number of HSP's gapped (non-prelim): 2822
length of query: 818
length of database: 12,639,632
effective HSP length: 105
effective length of query: 713
effective length of database: 5,953,652
effective search space: 4244953876
effective search space used: 4244953876
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 63 (28.9 bits)