BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146791.7 + phase: 0 /pseudo
(694 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233350 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransf... 32 0.95
TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 31 2.1
TC216015 similar to UP|Q9M610 (Q9M610) Ttg1-like protein, partia... 30 3.6
TC216321 similar to UP|Q948Y7 (Q948Y7) VMP3 protein, partial (3%) 30 3.6
TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {... 30 4.7
CF922212 30 4.7
TC234177 similar to GB|CAC05429.1|9955544|ATT6I14 leukotriene-A4... 30 4.7
BE659248 weakly similar to GP|28564988|gb RPL13 {Saccharomyces k... 29 6.1
TC225045 similar to UP|Q8L7C3 (Q8L7C3) Expressed protein, partia... 28 7.0
BG154493 29 8.0
TC233872 29 8.0
TC231595 homologue to GB|AAP42741.1|30984556|BT008728 At3g58120 ... 29 8.0
>TC233350 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
partial (19%)
Length = 511
Score = 32.0 bits (71), Expect = 0.95
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 450 LIEEGCGIGCWLVDMVLGMGGWRMGAGVVL---FGGRRLVGLEEGRVGAVLD 498
+ EG G G +VD +LG+G R G G+ L F G G E RVGAVL+
Sbjct: 223 VFREGGGTGGEVVDAILGVGEGR-GLGMELGGAFDGCGFEGGESERVGAVLE 71
>TC226467 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (6%)
Length = 1017
Score = 30.8 bits (68), Expect = 2.1
Identities = 44/159 (27%), Positives = 53/159 (32%), Gaps = 11/159 (6%)
Frame = -3
Query: 429 ELGS*GSLMRRC*GSGVGGYLLI----------EEGCGIGCWLVDMVLGMGGWRMGAGVV 478
E G G L+R G+G G L+ ++G G G + +GG GAGV
Sbjct: 661 ESGGAGGLLRTIVGAGAGA*CLLCLCLCLLCLCDDGAGAGTSTTGVGANVGGGGTGAGV- 485
Query: 479 LFGGRRLVGLEEGR-VGAVLDGLRVVWLGVWVMGRILCFGMSGGVEMSLSGLDLEGYLI* 537
G VG G V G V GV G I G GGVE G+
Sbjct: 484 ---GAGFVGAGAGAGVAFAGAGAGGVLAGV---GAIFGGGNGGGVETGGGGI-------- 347
Query: 538 L*INPLVLKRCSL*DGGGGRGMAVASKIVGVGGGASCGV 576
GGG G+ GG CGV
Sbjct: 346 ---------------GGGDVGVTTGDTF----GGCGCGV 287
>TC216015 similar to UP|Q9M610 (Q9M610) Ttg1-like protein, partial (91%)
Length = 1151
Score = 30.0 bits (66), Expect = 3.6
Identities = 27/73 (36%), Positives = 37/73 (49%), Gaps = 12/73 (16%)
Frame = -3
Query: 442 GSGVGGYLLIEEGCGIGCWLVDM----VLGMGGWRMG-------AGVVL-FGGRRLVGLE 489
G+ + G ++EEG GI + D+ V+ GG +G AGV FGGR V
Sbjct: 411 GAELAGLAVVEEGDGIHGVITDLPEAEVVAGGGEEVGGRGRGGFAGVEHEFGGRVRVVEG 232
Query: 490 EGRVGAVLDGLRV 502
E RVG+ G+RV
Sbjct: 231 ERRVGSYRKGVRV 193
>TC216321 similar to UP|Q948Y7 (Q948Y7) VMP3 protein, partial (3%)
Length = 661
Score = 30.0 bits (66), Expect = 3.6
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = -2
Query: 476 GVVLFGGRRLVGLEEGRVGAVLDGLRVVWLGVWVMGRILCFGMSGGVEMSLSGLD 530
GV FGG L R G L L + LG G G GGV++SL GLD
Sbjct: 381 GVFEFGGE----LMSARFGGFLSSLGLALLGASAGG-----GGDGGVDLSLQGLD 244
>TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {Arabidopsis
thaliana;} , partial (22%)
Length = 978
Score = 29.6 bits (65), Expect = 4.7
Identities = 43/154 (27%), Positives = 51/154 (32%), Gaps = 11/154 (7%)
Frame = -2
Query: 429 ELGS*GSLMRRC*GSGVGGYLLI----------EEGCGIGCWLVDMVLGMGGWRMGAGVV 478
E G G L+ G+G G L+ ++G G G + + +GG MGAGV
Sbjct: 659 ESGGAGGLL*ITVGAGAGA*CLLCLCLCLLCLCDDGAGAGTSTIGVGASVGGGGMGAGV- 483
Query: 479 LFGGRRLVGLEEGR-VGAVLDGLRVVWLGVWVMGRILCFGMSGGVEMSLSGLDLEGYLI* 537
G VG G V G V GV G I G GGV G
Sbjct: 482 ---GAGFVGAGAGAGVAFAGAGAGDVLAGV---GAIFGGGNGGGVATGGGG--------- 348
Query: 538 L*INPLVLKRCSL*DGGGGRGMAVASKIVGVGGG 571
GGG G A G GGG
Sbjct: 347 --------------SGGGNVGAATGDTFGGCGGG 288
>CF922212
Length = 445
Score = 29.6 bits (65), Expect = 4.7
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 431 GS*GSLMRRC*GSGVGGYLLIEEGCGIGCWLVDMVLGMGGW--RMGAGVVLFGGRRLVGL 488
G *G+L+ G G Y + + G+GCW+ ++ G G W + + V FGGRR L
Sbjct: 302 GI*GNLIMLFLEKGDGIYSITKGNWGLGCWIQNIKDG-GTWMRKEESKVNPFGGRRSASL 126
>TC234177 similar to GB|CAC05429.1|9955544|ATT6I14 leukotriene-A4
hydrolase-like protein {Arabidopsis thaliana;} , partial
(25%)
Length = 767
Score = 29.6 bits (65), Expect = 4.7
Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Frame = -3
Query: 441 *GSGV-----GGYLLIEEGCGIGCWLVDMVLGMGGWRMGAGVVLFGGRR---------LV 486
*G GV GG L E+G + + + G+GG + GGR +V
Sbjct: 498 *GGGVLYSEGGGVLAGEDGACMNGLALGVDEGVGGLGREEPLECGGGRGGGVRDEEGGVV 319
Query: 487 GLEEGRVGAVLDGLRVVWLGVWVMGRILCFGMSGGVEMSLSGLDLEGYLI*L*INPLVLK 546
G EG GA DG+RV R L FG+ GV +G+ +EG + L +
Sbjct: 318 GESEGEEGA-FDGVRV---REREGDRGLGFGVDDGVNGEGAGVQIEGAA----VGGLETE 163
Query: 547 RCSL*DGGGGR 557
C DGG G+
Sbjct: 162 ECGGVDGG*GQ 130
>BE659248 weakly similar to GP|28564988|gb RPL13 {Saccharomyces kluyveri},
partial (60%)
Length = 736
Score = 29.3 bits (64), Expect = 6.1
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 5/90 (5%)
Frame = +2
Query: 442 GSGVGGYLLIEEGCGIGCWLVDMVLGMGGWRMGAGVVLFGGRRLV-----GLEEGRVGAV 496
G G+G L + G+G + ++ +G+ G + G +L G LV G+ E V AV
Sbjct: 194 GLGLGTLLADTDKAGLGASVAELAVGVLGGGV-LGDLLLGDNSLVVDGESGVGEENVVAV 370
Query: 497 LDGLRVVWLGVWVMGRILCFGMSGGVEMSL 526
D L ++ G+ ++G + G++G + +L
Sbjct: 371 ADSLDLLGAGLALLGGL---GVAGEEDEAL 451
>TC225045 similar to UP|Q8L7C3 (Q8L7C3) Expressed protein, partial (67%)
Length = 640
Score = 28.1 bits (61), Expect(2) = 7.0
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Frame = +2
Query: 465 VLGMG--GWRMGAGVVLFGGRRLVGLEEGRVGAVLDGLRV---------VWLGVWVMGRI 513
V+G G GW + V G+ L GL +GA L +WL W +G
Sbjct: 239 VIGFGLIGWLAPSSVPAINGKSLTGLFFESIGAELAHFPTPPALTSSFWLWLVTWHLGLF 418
Query: 514 LC--FGMSG 520
+C FG G
Sbjct: 419 ICLTFGQIG 445
Score = 19.2 bits (38), Expect(2) = 7.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 456 GIGCWLVDMVLGMG 469
GIGC + + LG+G
Sbjct: 213 GIGCGQITV*LGLG 254
>BG154493
Length = 421
Score = 28.9 bits (63), Expect = 8.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 232 ICLEVIVLGMIMRWLYRIFSLQMTLYFWVRKVGR 265
IC+ VI++ M+M L +FS+ ++ F +R+ R
Sbjct: 152 ICIIVIIMSMLMLSLVEVFSMSTSMNFALRETRR 51
>TC233872
Length = 423
Score = 28.9 bits (63), Expect = 8.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 232 ICLEVIVLGMIMRWLYRIFSLQMTLYFWVRKVGR 265
IC+ VI++ M+M L +FS+ ++ F +R+ R
Sbjct: 287 ICIIVIIMSMLMLSLVEVFSMSTSMNFALRETRR 186
>TC231595 homologue to GB|AAP42741.1|30984556|BT008728 At3g58120 {Arabidopsis
thaliana;} , partial (30%)
Length = 867
Score = 28.9 bits (63), Expect = 8.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 204 VRETPFPLFYFYWLQRGCML 223
VRE F F+F W +RGC++
Sbjct: 798 VRELFFSFFFFVWRERGCLI 857
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.370 0.171 0.670
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,934,680
Number of Sequences: 63676
Number of extensions: 562394
Number of successful extensions: 7780
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3165
Number of HSP's successfully gapped in prelim test: 330
Number of HSP's that attempted gapping in prelim test: 4354
Number of HSP's gapped (non-prelim): 3869
length of query: 694
length of database: 12,639,632
effective HSP length: 104
effective length of query: 590
effective length of database: 6,017,328
effective search space: 3550223520
effective search space used: 3550223520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146791.7