TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146790.4 - phase: 0 
         (147 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC207025 similar to UP|Q93ZI1 (Q93ZI1) AT3g12300/F28J15_117, par...    30  0.32
BI701824 similar to PIR|T06752|T067 carboxy-terminal proteinase ...    28  1.6
TC219406 homologue to UP|HAP2_YEAST (P06774) Transcriptional act...    28  2.1
TC218690 similar to UP|O81812 (O81812) Auxilin-like protein, par...    26  6.1
TC233488 similar to UP|Q8RXD0 (Q8RXD0) Auxilin-like protein (At4...    26  6.1
TC206963 similar to UP|Q8S9B5 (Q8S9B5) Matrix metalloproteinase,...    26  6.1
TC206965                                                               26  6.1
TC204549 similar to UP|Q9M0X5 (Q9M0X5) Receptor protein kinase-l...    26  7.9

>TC207025 similar to UP|Q93ZI1 (Q93ZI1) AT3g12300/F28J15_117, partial (76%)
          Length = 688

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/61 (29%), Positives = 24/61 (38%), Gaps = 4/61 (6%)
 Frame = +3

Query: 54  TWTIDVRKETIANCFRHCKIRSASDVV----GNLDESTFDEETQDLQTMINQCGYRNKMD 109
           TW I  R+  +   +RHCK RS   V      +L  ST    +        QC    KM 
Sbjct: 276 TWLISPREHMVLIMWRHCKFRSMQTVA*EGFTSLTASTLKRNSLQSSNCTFQCRNHEKMG 455

Query: 110 I 110
           +
Sbjct: 456 V 458


>BI701824 similar to PIR|T06752|T067 carboxy-terminal proteinase homolog
           F15B8.130 - Arabidopsis thaliana, partial (3%)
          Length = 405

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 21  RRRFYRKILEGYEVGQSDPGKI------NVLDAINLAIPTWTIDVRKETIANCFRHCKIR 74
           R+   + + + ++V  + P KI      +VL    L +PTWT D RKE   N    C  R
Sbjct: 74  RKGKMKNLCQNFDVRATIPVKIGKKSTWDVLFPRRLWLPTWTCDQRKEGKLNLKVQCGTR 253


>TC219406 homologue to UP|HAP2_YEAST (P06774) Transcriptional activator HAP2,
           partial (7%)
          Length = 455

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/46 (32%), Positives = 25/46 (53%)
 Frame = +2

Query: 100 NQCGYRNKMDIDNLMNYPGENEACSEVQSLEDIVCTIIENNAEDDE 145
           N CG+ +   +D + N+ G N A +   SLE   C+ I  + +D+E
Sbjct: 113 NNCGFMSCDKLDRVANWVGANVASAFFASLER--CSCINLSIKDNE 244


>TC218690 similar to UP|O81812 (O81812) Auxilin-like protein, partial (48%)
          Length = 1043

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 60  RKETIANCFRHCKIRSASDVVGN 82
           R+ET  +CF+H  I  A  VVGN
Sbjct: 664 RQET*GHCFQHYNISLAPIVVGN 732


>TC233488 similar to UP|Q8RXD0 (Q8RXD0) Auxilin-like protein (At4g12780),
           partial (23%)
          Length = 670

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 60  RKETIANCFRHCKIRSASDVVGN 82
           R+ET  +CF+H  I  A  VVGN
Sbjct: 182 RQET*GHCFQHYNISLAPIVVGN 250


>TC206963 similar to UP|Q8S9B5 (Q8S9B5) Matrix metalloproteinase, partial
           (3%)
          Length = 737

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +1

Query: 60  RKETIANCFRHCKIRSASDVVGNLDESTFDEE 91
           R E I  C  HC++  A + +  L   ++DEE
Sbjct: 268 RLEEIDACAAHCEVNIAQEWLDKLPPRSYDEE 363


>TC206965 
          Length = 574

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (52%)
 Frame = +1

Query: 60  RKETIANCFRHCKIRSASDVVGNLDESTFDEE 91
           R E I  C  HC++  A + +  L   ++DEE
Sbjct: 361 RLEEIDACAAHCEVNIAQEWLDKLPPRSYDEE 456


>TC204549 similar to UP|Q9M0X5 (Q9M0X5) Receptor protein kinase-like protein,
           partial (54%)
          Length = 2032

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 111 DNLMNYPGENEACSEVQSLE 130
           DN  ++PG + AC+E  S+E
Sbjct: 432 DNFYSFPGTDPACTEPNSIE 373


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,976,511
Number of Sequences: 63676
Number of extensions: 63428
Number of successful extensions: 308
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of query: 147
length of database: 12,639,632
effective HSP length: 88
effective length of query: 59
effective length of database: 7,036,144
effective search space: 415132496
effective search space used: 415132496
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)