BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146790.3 + phase: 0 /pseudo
(1363 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 169 1e-41
CO982349 128 1e-29
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 84 1e-25
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 64 2e-20
CO979823 93 9e-19
TC213061 89 2e-17
TC213164 88 2e-17
TC211809 85 2e-16
TC231841 85 2e-16
TC233392 81 3e-15
CO984521 80 6e-15
CO986021 80 8e-15
CA851073 79 1e-14
TC222789 76 1e-13
BG404993 75 2e-13
TC231922 74 3e-13
AW757033 74 6e-13
BI972659 73 1e-12
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 72 1e-12
TC222557 72 2e-12
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 169 bits (427), Expect = 1e-41
Identities = 93/305 (30%), Positives = 161/305 (52%)
Frame = +1
Query: 560 NAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINTILQ 619
+A+IA E K+ K + K+D KAYD + W+F+ M+ M+F I I +
Sbjct: 7 SALIANEVIDEAKRSNKS---CLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEE 177
Query: 620 CISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIR 679
C+ + S +L+NG P+ F P+RGLRQGDPL+P+LF + A L+GL+++ ++N
Sbjct: 178 CVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYL 357
Query: 680 IARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVL 739
+ N I+ L +ADD + F A+ E + I +L +++ S +N KS V
Sbjct: 358 VGANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVF-GVT 534
Query: 740 NHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAG 799
+ K+ ++ + YLG+P+ + ++ + + +K+ WK + +S G
Sbjct: 535 DQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGG 714
Query: 800 KETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGETK 859
+ TLIK+V +IP Y S +++P+ D + + F W ++KI W+RW +L K
Sbjct: 715 RVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPK 894
Query: 860 KRGGL 864
+RGG+
Sbjct: 895 ERGGI 909
>CO982349
Length = 795
Score = 128 bits (322), Expect = 1e-29
Identities = 68/233 (29%), Positives = 121/233 (51%)
Frame = +3
Query: 620 CISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIR 679
C+ + S IL+N P F P+RGLRQGDPL+P LF + A L+GL+++ + +
Sbjct: 81 CLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFNSFL 260
Query: 680 IARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVL 739
+ +N ++ L +ADD + F A++E + I ++L ++ ASG +N +S
Sbjct: 261 VGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIWKPD 440
Query: 740 NHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAG 799
+ KE + +N ++ YLG+P+ +E+ + + K+ WK++ +S G
Sbjct: 441 HWCKE-AAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHISLGG 617
Query: 800 KETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRW 852
+ TLI A+ A+P Y S ++ P + + KF W +R+I W++W
Sbjct: 618 RVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKW 776
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 83.6 bits (205), Expect(2) = 1e-25
Identities = 42/118 (35%), Positives = 66/118 (55%)
Frame = -3
Query: 614 INTILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDN 673
+ + C+ST + +L NG+ F P G+RQ DP++PYLF+LC LS L+
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 674 KIHGIRIARNAPKITHLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSE 731
I++ R I+HL F DD +LF A++++ I L + D+SG VN+DK++
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTK 333
Score = 52.8 bits (125), Expect(2) = 1e-25
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = -2
Query: 733 SYSRNVLNHDKEIICQRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKE 792
S+S+NV +E I + +++ + +YLG+P+ F F+ ++V K+ WK
Sbjct: 327 SFSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKS 148
Query: 793 KCLSRAGKETLIKAVAQAIPNYIM 816
LS G+ TL K V A+P++IM
Sbjct: 147 NLLSMVGRLTLTK*VV*ALPSHIM 76
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 64.3 bits (155), Expect(2) = 2e-20
Identities = 34/99 (34%), Positives = 54/99 (54%)
Frame = -3
Query: 557 ITDNAIIAMECFHWMKKKTKGKKGVMAMKLDMAKAYDRIEWSFVKSMLQSMNFPENIINT 616
I D + E + + KK G G +A+K+D+ KA+D ++ F+ S+L + N
Sbjct: 834 IKDCTCVTSEVINMLDKKVFG--GNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNW 661
Query: 617 ILQCISTVSYQILINGQPSRRFFPERGLRQGDPLSPYLF 655
I + + I +NG+P F +RG+RQGDPLSP L+
Sbjct: 660 IRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
Score = 54.3 bits (129), Expect(2) = 2e-20
Identities = 29/132 (21%), Positives = 63/132 (46%)
Frame = -2
Query: 688 THLLFADDGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIIC 747
+H++ ADD ++F + + +I+ Y+D+ GQ+++ KS++ + ++ +I
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKI-FIGSIPGQRLRVIS 275
Query: 748 QRINIKTVNTHSRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAV 807
+ + Y G+P+ G+ + V +++ K+ WK LS G+ L+ +V
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 808 AQAIPNYIMSCY 819
+ Y S Y
Sbjct: 94 IHGMLLYSFSVY 59
>CO979823
Length = 853
Score = 92.8 bits (229), Expect = 9e-19
Identities = 54/184 (29%), Positives = 96/184 (51%), Gaps = 8/184 (4%)
Frame = -2
Query: 1011 DDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLW 1070
+DK W+ E G YS +SG+H+L ++E+ ++ + +IW P A F W
Sbjct: 705 EDKWLWKPEPGGHYSTKSGYHVLWGELTEEIQDAD-------FAEIWKLKIPTKAAVFAW 547
Query: 1071 RLASNILPTRCNLSKKGISL-DQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHIP- 1128
RL + LPT+ NL ++ + + D CPLCN+ E HLF +C +W+ S +++
Sbjct: 546 RLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKT 367
Query: 1129 --PNSMCREWMELWLKKDDPLAV---QVFGITL-WRLWQGRNQLIFKNSPFDPALIAQSA 1182
P + + +++ D L + + I L W +WQ RN+++F+N+ F + + A
Sbjct: 366 AMPQTPRQHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVFQNATFHGNKVLEDA 187
Query: 1183 VLLV 1186
+LL+
Sbjct: 186 LLLL 175
>TC213061
Length = 823
Score = 88.6 bits (218), Expect = 2e-17
Identities = 53/184 (28%), Positives = 83/184 (44%), Gaps = 8/184 (4%)
Frame = +2
Query: 1011 DDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLW 1070
+D+ W E SG Y RS + ++ E +E + +K++W P F W
Sbjct: 125 EDQWVWAAESSGSYLARSAYRVIREGIPEEEQDRE-------FKELWKLKVPMKVTMFAW 283
Query: 1071 RLASNILPTRCNLSKKGISL-DQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGI---- 1125
RL +ILPTR NL +K + L + CPLC S E +HLF HC +W+ S +
Sbjct: 284 RLLKDILPTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIWWESLSWVKLVG 463
Query: 1126 ---HIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQSA 1182
H P + + E++ + W +W+ RN +IF N+ F+ + A
Sbjct: 464 AFPHHPRHHFHQHSHEVYQGLQGNRWKWWWLALTWTIWKHRNDIIFSNATFNAHKVMDDA 643
Query: 1183 VLLV 1186
V L+
Sbjct: 644 VFLI 655
>TC213164
Length = 446
Score = 88.2 bits (217), Expect = 2e-17
Identities = 46/128 (35%), Positives = 73/128 (56%)
Frame = +3
Query: 439 FSPAEIKDAIDQMHPLKAPGPDGLPALFFQKYWYIVGSEVVSLALGILNEGKSTECINKT 498
F E++ + K+PGPDGL F +++W I+ ++++ G + N
Sbjct: 30 FEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKRSNAF 209
Query: 499 FIALIPKCKNPSSPNQFRPISLCNVVMKIVTKTIANRLKPILPEIMDEEQSAFVQGRLIT 558
F+ALIPK +P S N+++PISL + KIV K ++ R K +LP I+DE Q+ F++GR
Sbjct: 210 FLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEGRHTL 389
Query: 559 DNAIIAME 566
N +IA E
Sbjct: 390 HNVVIANE 413
>TC211809
Length = 895
Score = 85.1 bits (209), Expect = 2e-16
Identities = 57/201 (28%), Positives = 83/201 (40%), Gaps = 20/201 (9%)
Frame = +2
Query: 1022 GEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRC 1081
G YS +S + LL E + + + V +WN P A F WRL + LPT
Sbjct: 200 GNYSTKSAYRLLMEATGEFPVDRTYV-------DLWNLKIPSKAIVFAWRLIKDRLPTWT 358
Query: 1082 NLSKKGISLDQS-CPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGI-------HIPPNSM- 1132
NL + + L+ S CPLCNS ED HLF HC + +W+ + + H P +
Sbjct: 359 NLRVRQVELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFL 538
Query: 1133 -----------CREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNSPFDPALIAQS 1181
R W LW+ W +W+ RN ++F N FD + + +
Sbjct: 539 QHDNRSAGGVXARRWKCLWV------------ALTWVIWKHRNGVVFHNHSFDGSKVMED 682
Query: 1182 AVLLVEEFNLANRKAACHPIS 1202
A+LL + K P S
Sbjct: 683 AILLTWSWLKVMEKGFTGPFS 745
>TC231841
Length = 791
Score = 84.7 bits (208), Expect = 2e-16
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%)
Frame = +3
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWR 1071
D+ W+ + SG+Y+ +S + +L +E + +++++W P F WR
Sbjct: 63 DQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDG-------VFEELWKLKLPSKITIFAWR 221
Query: 1072 LASNILPTRCNLSKKGISLDQ-SCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIH---I 1127
L + LPTR NL +K I +D CP C S E HLF HC VW+ S ++ +
Sbjct: 222 LIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGV 401
Query: 1128 PPNSMCREWMELWLKKDDPLAVQVFGIT---------------LWRLWQGRNQLIFKNSP 1172
PN + +++ ++G+T W +W+ RN +IF N
Sbjct: 402 FPNHPRQHFLQ-----------HIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGT 548
Query: 1173 FDPALIAQSAVLLV 1186
F+ I A+ L+
Sbjct: 549 FNANKILDEAIFLI 590
>TC233392
Length = 1145
Score = 81.3 bits (199), Expect = 3e-15
Identities = 57/201 (28%), Positives = 89/201 (43%), Gaps = 20/201 (9%)
Frame = -1
Query: 1005 ISFRLPDDKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRS 1064
I ++PD V W+ E + YS RS + LL + E + + + +W P
Sbjct: 674 IQQQVPDTWV-WKHEPNELYSTRSAYKLLQGHLEGEDQDGAL-------QDLWKLKIPAK 519
Query: 1065 AQNFLWRLASNILPTRCNLSKKGISLDQS-CPLCNSGLEDLNHLFLHCPAAKAVWFSS-- 1121
A F WRL + LPT+ NL ++ + L+ S CP C ED +H+FL C + +W+ S
Sbjct: 518 ASIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQT 339
Query: 1122 ---PLGI-----------HI---PPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRN 1164
LG+ H+ P + W W+ W LW+ RN
Sbjct: 338 WVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWI------------ALTWSLWKHRN 195
Query: 1165 QLIFKNSPFDPALIAQSAVLL 1185
Q+IF+N+ F+ + + AV L
Sbjct: 194 QVIFQNAQFNGIKLLEDAVFL 132
>CO984521
Length = 716
Score = 80.1 bits (196), Expect = 6e-15
Identities = 53/199 (26%), Positives = 84/199 (41%), Gaps = 22/199 (11%)
Frame = -2
Query: 1010 PDDKVTWQW--EKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQN 1067
P+ W+W E SG YS +S + L E + +K++W P
Sbjct: 658 PELSDQWKWAAEPSGCYSTKSAYKALHHVTVGEEQDGK-------FKELWKLRVPLKVAI 500
Query: 1068 FLWRLASNILPTRCNLSKKGISLDQ-SCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIH 1126
F WRL + LPT+ NL KK + L + CPLC S E +HLF HC +W+ S
Sbjct: 499 FAWRLIQDKLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWES----- 335
Query: 1127 IPPNSMCREWMELW----LKKDDPLAVQVFGITL---------------WRLWQGRNQLI 1167
+ W+ + + D + +FG ++ + +W+ RN +I
Sbjct: 334 -------QSWVNMMGVFPYQPDQHFSQHIFGASVGLQGKRWQWWWFALTYSIWKHRNSII 176
Query: 1168 FKNSPFDPALIAQSAVLLV 1186
F N+ FD + AV ++
Sbjct: 175 FSNANFDAHKLMDDAVFIL 119
>CO986021
Length = 900
Score = 79.7 bits (195), Expect = 8e-15
Identities = 55/196 (28%), Positives = 79/196 (40%), Gaps = 24/196 (12%)
Frame = -1
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWR 1071
D + W+ + +G YS +S + LL N S+ +K +W P A+ F WR
Sbjct: 783 DSMLWKADPTGIYSTKSAYRLLLPNNRPGQHSSN-------FKILWKLKIPPRAELFSWR 625
Query: 1072 LASNILPTRCNLSKKGISL-DQSCPLCNSGLEDLNHLFLHC------------------- 1111
L + L R NL ++ ++L D CPLC + E+ HLF HC
Sbjct: 624 LFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWWESMNWTRTLGA 445
Query: 1112 ----PAAKAVWFSSPLGIHIPPNSMCREWMELWLKKDDPLAVQVFGITLWRLWQGRNQLI 1167
PAA + FS G N C W+ L +WQ RN L+
Sbjct: 444 FLDDPAAHFIQFSDGFGAQRNHNRRCLWWIAL----------------TSTIWQHRNSLL 313
Query: 1168 FKNSPFDPALIAQSAV 1183
FK +PF P + A+
Sbjct: 312 FKGTPFQPPKVMDDAL 265
>CA851073
Length = 633
Score = 79.0 bits (193), Expect = 1e-14
Identities = 52/194 (26%), Positives = 88/194 (44%), Gaps = 20/194 (10%)
Frame = +1
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWR 1071
D + W+ + G YS +S + +L ++ V+E++ I+K IW P A F WR
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILM-TCNRHVSEAN------IFKTIWKLKIPPRAAVFSWR 186
Query: 1072 LASNILPTRCNLSKKGISLDQS-CPLCNSGLEDLNHLFLHCPAAKAVWFSS--------P 1122
L + LPTR NL ++ +S+ ++ CPLC E+ +HLF +C + +W+ S P
Sbjct: 187 LIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQIVGP 366
Query: 1123 LGIHIPPN--SMC---------REWMELWLKKDDPLAVQVFGITLWRLWQGRNQLIFKNS 1171
L + + C W W+ + W+ RN LIF+ +
Sbjct: 367 LSVSPASHFVQFCDGFGAGRNHTRWCGWWIALTSSI------------WKHRNLLIFQGN 510
Query: 1172 PFDPALIAQSAVLL 1185
F+P+ + A+ L
Sbjct: 511 QFEPSKVMDDALFL 552
>TC222789
Length = 954
Score = 75.9 bits (185), Expect = 1e-13
Identities = 45/143 (31%), Positives = 76/143 (52%), Gaps = 10/143 (6%)
Frame = +2
Query: 1053 WKQIWNFNGPRSAQNFLWRLASNILPTRCNLSKKGIS-LDQSCPLCNSGLEDLNHLFLHC 1111
++++W P + F WRL + LPT+ NL ++ I +D+SCP C + ED HLF HC
Sbjct: 353 FEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRNVEEDAGHLFFHC 532
Query: 1112 PAAKAVWFSSPLGIHIPPNSMCREWMELWLKKDDPLAVQV--------FGITLWRLWQGR 1163
+W+ S ++I ++ ++ + +L+ D +A + + W +WQ R
Sbjct: 533 SKIIPIWWESLSWVNI-SGALPKDPRQHFLQHDLIMAGGIRTTRWKCWWLAVTWTIWQQR 709
Query: 1164 NQLIFKNSPFDP-ALIAQSAVLL 1185
N++IF N FD LI ++A LL
Sbjct: 710 NKIIFFNDSFDANKLIDEAAFLL 778
>BG404993
Length = 412
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Frame = -3
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSD---IWKQIWNFNGPRSAQNF 1068
D TW+ + SG YS ++ + LL E ++RG + I+ Q+W P A F
Sbjct: 332 DSWTWKADPSGNYSTKTAYELLQE----------AIRGDNEDGIFVQLWKLKIPPKAPVF 183
Query: 1069 LWRLASNILPTRCNLSKKGISLDQS-CPLCNSGLEDLNHLFLHCPAAKAVWFSS 1121
WRL ++ LPT+ NL ++ + + S CPLCN+ ED HLF +C W+ S
Sbjct: 182 TWRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWES 21
>TC231922
Length = 803
Score = 74.3 bits (181), Expect = 3e-13
Identities = 42/117 (35%), Positives = 63/117 (52%), Gaps = 1/117 (0%)
Frame = -3
Query: 1012 DKVTWQWEKSGEYSVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWR 1071
D + W+ + SG YS +S + LL + ++ + S R I++ +W+ P A F WR
Sbjct: 444 DSMFWKADSSGVYSTKSAYRLLMPS----ISPAPSRR---IFQILWHLKIPPRAAVFSWR 286
Query: 1072 LASNILPTRCNLSKKGISL-DQSCPLCNSGLEDLNHLFLHCPAAKAVWFSSPLGIHI 1127
L + LPTR NLS++ I + D CPLC E+ HLF HC K +W+ S I +
Sbjct: 285 LFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRV 115
>AW757033
Length = 441
Score = 73.6 bits (179), Expect = 6e-13
Identities = 42/142 (29%), Positives = 77/142 (53%)
Frame = -2
Query: 635 SRRFFPERGLRQGDPLSPYLFILCANVLSGLLKKEEKDNKIHGIRIARNAPKITHLLFAD 694
+R F P RGLRQGDPL+P LF + A L+GL+++ N + + ++ L +AD
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYAD 261
Query: 695 DGLLFARASVEEAQCIISVLNTYQDASGQIVNLDKSEVSYSRNVLNHDKEIICQRINIKT 754
D + F A++E + I ++L ++ ASG +N KS + +V + ++ + +N
Sbjct: 260 DTIFFGEATMENVRVIKTILRGFELASGLKINFAKSRFG-AISVPD*WRKEAAEFMNCSL 84
Query: 755 VNTHSRYLGLPVIFGRSKKEVF 776
++ YLG+P+ ++E +
Sbjct: 83 LSLPFSYLGIPIGANPRRRETW 18
>BI972659
Length = 453
Score = 72.8 bits (177), Expect = 1e-12
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Frame = +1
Query: 702 ASVEEAQCIISVLNTYQDASGQIVNLDKSE---VSYSRNVLNHDKEIICQRINIKTVNTH 758
AS + + S+L ++ SG +N KS+ V + N HD Q +N + ++
Sbjct: 10 ASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWA-HDA---AQLLNCRQLDIP 177
Query: 759 SRYLGLPVIFGRSKKEVFSFVQERVWKKIKGWKEKCLSRAGKETLIKAVAQAIPNYIMSC 818
YLG+P+ S + V+ + + K+ W +K LS G+ TLIK+V A+P Y++S
Sbjct: 178 FHYLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSF 357
Query: 819 YKLPEGCCDAVEGMLAKFWWASDEYKRKIHWM 850
+K+P+ D + + F W +++ +I W+
Sbjct: 358 FKIPQRIVDKLVSLQRTFMWGGNQHHNRISWV 453
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 72.4 bits (176), Expect = 1e-12
Identities = 32/97 (32%), Positives = 56/97 (56%)
Frame = +2
Query: 799 GKETLIKAVAQAIPNYIMSCYKLPEGCCDAVEGMLAKFWWASDEYKRKIHWMRWGRLGET 858
G+ TLIK+V A+P +S +K+P+ D + + +F W ++ +I W++W +
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 859 KKRGGLGFRSFSDFNKALLGKQYWRLLADNNSLMSSI 895
K GGLG + S+FN AL G+ W L +++N L + +
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>TC222557
Length = 1002
Score = 72.0 bits (175), Expect = 2e-12
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 8/170 (4%)
Frame = +1
Query: 1025 SVRSGHHLLCENKSKEVAESSSVRGSDIWKQIWNFNGPRSAQNFLWRLASNILPTRCNLS 1084
S G H +C K + +R + + +W P A F WRL +PT+ NL
Sbjct: 364 SFLQGAHTVCY*KEQ------LIRLDEALEDLWQLKIPLKATTFAWRLIKERIPTKGNLW 525
Query: 1085 KKGISLDQ-SCPLCNSGLEDLNHLFLHCPAAKAVWFSS-----PLGIHIP-PNSMCREWM 1137
++ + L+ CP CN E+ +HLF +CP +W+ S +G+ P P +
Sbjct: 526 RRRVQLNNLMCPFCNRQEEEASHLFFNCPRILPLWWESLAWTKTVGVFSPIPRQNYMQHT 705
Query: 1138 ELWLKKDDPLAVQVFGITL-WRLWQGRNQLIFKNSPFDPALIAQSAVLLV 1186
+ K + + + L W +W+ RN+++F N F+ + + A+ LV
Sbjct: 706 LISKGKHLQARWKCWWVALTWSIWRHRNRIVFLNKAFNGSKLMDDAIFLV 855
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,837,387
Number of Sequences: 63676
Number of extensions: 1106922
Number of successful extensions: 5509
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 5383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5446
length of query: 1363
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1254
effective length of database: 5,698,948
effective search space: 7146480792
effective search space used: 7146480792
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146790.3