TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146784.13 + phase: 0 /pseudo
         (36 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229065 similar to UP|Q9LZV3 (Q9LZV3) (1-4)-beta-mannan endohyd...    50  2e-07
TC227824 similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-beta-mann...    33  0.034
TC219210 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohyd...    33  0.045
TC210123 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohyd...    31  0.13
TC227823 homologue to UP|Q9AT07 (Q9AT07) ADP-glucose pyrophospho...    31  0.13
TC217032 weakly similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-be...    31  0.17
BI320953                                                               27  2.4

>TC229065 similar to UP|Q9LZV3 (Q9LZV3) (1-4)-beta-mannan endohydrolase-like
           protein (At5g01930), partial (45%)
          Length = 1674

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 22/26 (84%), Positives = 25/26 (95%)
 Frame = +1

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSK 26
           M+AHIED EKYLGMPVVF+EFGVS+K
Sbjct: 286 MEAHIEDAEKYLGMPVVFAEFGVSAK 363


>TC227824 similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-beta-mannosidase
           (At5g66460), partial (16%)
          Length = 924

 Score = 33.1 bits (74), Expect = 0.034
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSK 26
           +D HI+D +  L  P++F+EFG+S+K
Sbjct: 132 LDEHIQDAQNTLHKPLLFAEFGISTK 209


>TC219210 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohydrolase,
           partial (56%)
          Length = 1116

 Score = 32.7 bits (73), Expect = 0.045
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVS 24
           M +HIED +K L  PV+FSE+G+S
Sbjct: 565 MLSHIEDGDKVLNKPVLFSEYGLS 636


>TC210123 similar to UP|Q9SKU9 (Q9SKU9) (1-4)-beta-mannan endohydrolase,
          partial (19%)
          Length = 640

 Score = 31.2 bits (69), Expect = 0.13
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 3  AHIEDTEKYLGMPVVFSEFGVS 24
          +HIED ++ L  PV+FSEFG+S
Sbjct: 2  SHIEDGDEVLKKPVLFSEFGLS 67


>TC227823 homologue to UP|Q9AT07 (Q9AT07) ADP-glucose pyrophosphorylase large
           subunit CagpL2, partial (25%)
          Length = 1272

 Score = 31.2 bits (69), Expect = 0.13
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSK 26
           ++ HI+D +  L  P++F+EFG+S+K
Sbjct: 243 LNEHIQDAQNTLHKPLLFAEFGISTK 320


>TC217032 weakly similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-beta-mannosidase
            (At5g66460), partial (75%)
          Length = 1606

 Score = 30.8 bits (68), Expect = 0.17
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +2

Query: 1    MDAHIEDTEKYLGMPVVFSEFGVSSKDLATTQ 32
            +  HI+D +  LG P+V  EFG S K  +  +
Sbjct: 1040 LQTHIQDAKNVLGKPIVVGEFGKSLKSYSVVE 1135


>BI320953 
          Length = 133

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 1  MDAHIEDTEKYLGMPVVFSEFG 22
          +  HI+D +  LG P+V  EFG
Sbjct: 65 LQTHIQDAKIVLGKPIVVGEFG 130


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,018,900
Number of Sequences: 63676
Number of extensions: 4730
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 36
length of database: 12,639,632
effective HSP length: 12
effective length of query: 24
effective length of database: 11,875,520
effective search space: 285012480
effective search space used: 285012480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)