TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146759.6 - phase: 0 
         (1825 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP395547 reverse transcriptase [Glycine max]                          418  e-116
NP395548 reverse transcriptase [Glycine max]                          417  e-116
NP595172 polyprotein [Glycine max]                                    366  e-101
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...   183  7e-46
BE802896                                                              183  7e-46
CF922488                                                              174  4e-43
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ...   103  9e-43
BI321666                                                              157  3e-38
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ...   152  1e-36
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   139  9e-33
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (...   135  2e-31
TC232398                                                               95  6e-31
NP334778 reverse transcriptase [Glycine max]                          126  1e-28
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin...   124  3e-28
BQ133845                                                              122  2e-27
TC222094                                                               76  4e-27
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)         114  3e-25
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   112  2e-24
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    84  7e-16
AW570005                                                               83  1e-15

>NP395547 reverse transcriptase [Glycine max]
          Length = 762

 Score =  418 bits (1075), Expect = e-116
 Identities = 196/254 (77%), Positives = 224/254 (88%)
 Frame = +1

Query: 952  VKKEVLKLLDAGMIYPISDSSWVSPVHVVPKKGGMTVVVNEKNELIPTRTVTGRRMCIDY 1011
            V+KEV KLL+AG+IYPISDSSWVSPV VVPKKGGMTVV N++NELIPTR VT  RMCIDY
Sbjct: 1    VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180

Query: 1012 RRLNTATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSGYNQIAVAPEDQEKTAFTCPFGV 1071
            R+LN ATRKDH+PLPFMDQM++RLA Q+FY FLDGYSGYNQIAV P+DQEKTAFTCPF V
Sbjct: 181  RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360

Query: 1072 FAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSVFGKSFDQCLFHLNAVLKR 1131
            FAYRRMPFGLC A  TFQRCM++IF DM+EK IEVFMDDFS FG SF  CL +L  VL+R
Sbjct: 361  FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540

Query: 1132 CTETNLILNWEKCHFMVTEGIVLGHKISSKGIEVDQAKIEVIEKLPPPMNVKGVRSFLGH 1191
            C ++NL+LNWEKCHFMV EGIVLGHKIS +GIEV + K++VI+KLPPP+NVKG+ SFLGH
Sbjct: 541  CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720

Query: 1192 AGFYRRFIKDFSKI 1205
             GFYRRFIKDF+K+
Sbjct: 721  VGFYRRFIKDFTKV 762


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score =  417 bits (1072), Expect = e-116
 Identities = 196/254 (77%), Positives = 223/254 (87%)
 Frame = +1

Query: 952  VKKEVLKLLDAGMIYPISDSSWVSPVHVVPKKGGMTVVVNEKNELIPTRTVTGRRMCIDY 1011
            V+KEVLKLL+ G+IYPISDS+WVSPV VV KK GMTV+ NEKN+LIPTRTVT  ++CIDY
Sbjct: 1    VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180

Query: 1012 RRLNTATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSGYNQIAVAPEDQEKTAFTCPFGV 1071
            R+LN ATRKDHFPLPFMDQM+ERLAG A+YCFLD Y GYNQI V P+DQEK AFTCPFGV
Sbjct: 181  RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360

Query: 1072 FAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSVFGKSFDQCLFHLNAVLKR 1131
            FAYRR+PFGLC AP TFQ CML+IF+D++EK+IEVFMDDFSVF  S + CL  L  VL+R
Sbjct: 361  FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540

Query: 1132 CTETNLILNWEKCHFMVTEGIVLGHKISSKGIEVDQAKIEVIEKLPPPMNVKGVRSFLGH 1191
            C ETNL+LNWEKCHFMV EGIVLGHKIS++GIEVDQ KI+VIEKLPPP NVKG+RSFLG 
Sbjct: 541  CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720

Query: 1192 AGFYRRFIKDFSKI 1205
            A FYRRFIKDF+K+
Sbjct: 721  ARFYRRFIKDFTKV 762


>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  366 bits (939), Expect = e-101
 Identities = 280/879 (31%), Positives = 427/879 (47%), Gaps = 15/879 (1%)
 Frame = +1

Query: 947  TMKEVVKKEVLKLLDAGMIYPISDSSWVSPVHVVPKKGGMTVVVNEKNELIPTRTVTGRR 1006
            T K+ ++K + ++L  G+I P S+S +  P+ +V KK G                    R
Sbjct: 1822 TQKDQIEKMIQEMLVQGIIQP-SNSPFSLPILLVKKKDGSW------------------R 1944

Query: 1007 MCIDYRRLNTATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSGYNQIAVAPEDQEKTAFT 1066
             C DYR LN  T KD FP+P +D++++ L G  ++  LD  SGY+QI V PED+EKTAF 
Sbjct: 1945 FCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFR 2124

Query: 1067 CPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSVFGKSFDQCLFHLN 1126
               G + +  MPFGL  APATFQ  M  IF   + K + VF DD  ++  S+   L HL 
Sbjct: 2125 THHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLE 2304

Query: 1127 AVLKRCTETNLILNWEKCHFMVTEGIVLGHKISSKGIEVDQAKIEVIEKLPPPMNVKGVR 1186
            +VL+   +  L     KC F  TE   LGHK+S  G+ ++  K++ +   P P NVK +R
Sbjct: 2305 SVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLR 2484

Query: 1187 SFLGHAGFYRRFIKDFSKIAKPLCNLLVKETEFDFDVECLNAFSLIKNKLVTAPIIIAPN 1246
             FLG  G+YRRFIK ++ IA PL +LL K++ F ++ E   AF  +K  +  AP++  P+
Sbjct: 2485 GFLGLTGYYRRFIKSYANIAGPLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPD 2661

Query: 1247 WDLHFELMCDASDYAVGAVLGQRKNKFFHAIYYASKVLNESQVNYSTTEKELLAVIFALE 1306
            +   F L  DAS   VGAVLGQ      H I Y SK L       S   +ELLA+  AL 
Sbjct: 2662 FSQPFILETDASGIGVGAVLGQNG----HPIAYFSKKLAPRMQKQSAYTRELLAITEALS 2829

Query: 1307 KFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWVLLLQEFDLEIRDKKGVENVVADH 1366
            KFR YL+G+K I+ TD  +LK L+ +    P    W+     +D +I  K G +N  AD 
Sbjct: 2830 KFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADA 3009

Query: 1367 LSRLENNEVTKKEGAIMAEFPDEQLFAIRERPWFADMANFKAGNIIPDDMEQ-HQRKKFF 1425
            LSR+           ++A      +F          +   +A  I    ++Q  +  K  
Sbjct: 3010 LSRM----------FMLAWSEPHSIF----------LEELRARLISDPHLKQLMETYKQG 3129

Query: 1426 KDANHYLWDDPYLFKVSTDGLIRRCVAGEEIKN-IVWHCHSSAYGGHHSGERTAAKVLQS 1484
             DA+HY   +  L+    D ++    A EEI N I+   HSS  GGH    RT A+ L++
Sbjct: 3130 ADASHYTVREGLLY--WKDRVV--IPAEEEIVNKILQEYHSSPIGGHAGITRTLAR-LKA 3294

Query: 1485 GFWWPTLFKDCHDFVRRCDNCQRTGSISKRNEMPLTGIIEVEPF--DCW---GIDFMGPF 1539
             F+WP + +D   ++++C  CQ+  S    N +P  G+++  P     W    +DF+   
Sbjct: 3295 QFYWPKMQEDVKAYIQKCLICQQAKS---NNTLP-AGLLQPLPIPQQVWEDVAMDFITGL 3462

Query: 1540 PPSSSYLHILVCVDYVTKWVEAIPCVAN-DSKTVVNFLRKNIFTRFGTPRVLISDGGKHF 1598
            P S     I+V +D +TK+   IP  A+ +SK V      +I    G PR ++SD  + F
Sbjct: 3463 PNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVF 3642

Query: 1599 CNNFLETVLKKYNIKHKVATPYHPQTSGQVEVSNRQLKQILEKTVASSRKDWSRKLDDAL 1658
             + F + + K       +++ YHPQ+ GQ EV N+ L+  L        K W + L  A 
Sbjct: 3643 TSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAE 3822

Query: 1659 WAYRIAFKTHLGLSPYQLVFGKACHLPVELEHKAYWAIKALNFDQTLAGKKRLLKLNELE 1718
            + Y  A+   LG++P++ ++G+    P  L  +A          + L  +  LL   ++ 
Sbjct: 3823 FWYNTAYHMSLGMTPFRALYGRE---PPTLTRQACSIDDPAEVREQLTDRDALLAKLKI- 3990

Query: 1719 EMRLGAYENAVIYKERTKRYHDKGLVRREFYVGQLVLL------FNSRLKLFPGKLKSKW 1772
                    N    ++  KR  DK  +   F +G  VL+       +S +     KL  ++
Sbjct: 3991 --------NLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRY 4146

Query: 1773 SGPFMIESISPYGAVELSKPGEPGTFKV-NAQRIKPYLG 1810
             GPF + +     A +L  P       V +  ++KP+ G
Sbjct: 4147 FGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNG 4263


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
            {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score =  183 bits (464), Expect = 7e-46
 Identities = 80/125 (64%), Positives = 105/125 (84%)
 Frame = -3

Query: 1603 LETVLKKYNIKHKVATPYHPQTSGQVEVSNRQLKQILEKTVASSRKDWSRKLDDALWAYR 1662
            +  +LKKY + H+V+TPYHPQT+GQ E+SNR++K+ILEK V  SRKDWS +LDDALWA+R
Sbjct: 376  MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197

Query: 1663 IAFKTHLGLSPYQLVFGKACHLPVELEHKAYWAIKALNFDQTLAGKKRLLKLNELEEMRL 1722
             A+K  +G+SPY++VFGKACHLPVE+EHKAYWA+K  NF    AG++R L+L+EL+E+RL
Sbjct: 196  TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17

Query: 1723 GAYEN 1727
             AYEN
Sbjct: 16   EAYEN 2


>BE802896 
          Length = 416

 Score =  183 bits (464), Expect = 7e-46
 Identities = 86/138 (62%), Positives = 109/138 (78%)
 Frame = -2

Query: 1187 SFLGHAGFYRRFIKDFSKIAKPLCNLLVKETEFDFDVECLNAFSLIKNKLVTAPIIIAPN 1246
            SFLGHAGFYRRFI+DF K+A PL NLL KE EFDF+ +C  AF  +K  L+T PII AP+
Sbjct: 415  SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236

Query: 1247 WDLHFELMCDASDYAVGAVLGQRKNKFFHAIYYASKVLNESQVNYSTTEKELLAVIFALE 1306
            W   FELMCDAS+YA+G VL Q+ +K    IYY+S+ L+ +Q NY+TTEKELLA++FALE
Sbjct: 235  WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56

Query: 1307 KFRSYLIGSKVIVFTDHA 1324
            KF SYL+G+++IV+ DHA
Sbjct: 55   KFHSYLLGTRIIVYIDHA 2


>CF922488 
          Length = 741

 Score =  174 bits (440), Expect = 4e-43
 Identities = 95/237 (40%), Positives = 138/237 (58%)
 Frame = +3

Query: 1007 MCIDYRRLNTATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSGYNQIAVAPEDQEKTAFT 1066
            MC+DYR LN A+ KD FPLP ++ +++     + + F+DG+SGYNQI +APED EKT F 
Sbjct: 30   MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAPEDMEKTTFI 209

Query: 1067 CPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSVFGKSFDQCLFHLN 1126
              +G F Y+ M FGL    AT+QR M+++F DM+ K IEV+MDD  V  ++ ++ L +L 
Sbjct: 210  TLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRTEEEHLVNLR 389

Query: 1127 AVLKRCTETNLILNWEKCHFMVTEGIVLGHKISSKGIEVDQAKIEVIEKLPPPMNVKGVR 1186
             + +R  +  L LN  KC F V    +L    S +GIEVD  K++VI ++  P   K V+
Sbjct: 390  KLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMAKPHTEKQVQ 569

Query: 1187 SFLGHAGFYRRFIKDFSKIAKPLCNLLVKETEFDFDVECLNAFSLIKNKLVTAPIII 1243
             FLG   +  RFI       +PL  LL K     +D +C  AF  IK  L+   +++
Sbjct: 570  GFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLINPHVLV 740


>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
            partial (3%)
          Length = 416

 Score =  103 bits (257), Expect(2) = 9e-43
 Identities = 46/63 (73%), Positives = 55/63 (87%)
 Frame = +2

Query: 1640 EKTVASSRKDWSRKLDDALWAYRIAFKTHLGLSPYQLVFGKACHLPVELEHKAYWAIKAL 1699
            EK VASSRKDWS KL+DALWA + A KT +GL+P+Q+V+ KACHLPVEL+HKAYWA+K L
Sbjct: 224  EKNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELKHKAYWAMKCL 403

Query: 1700 NFD 1702
            NFD
Sbjct: 404  NFD 412



 Score = 90.9 bits (224), Expect(2) = 9e-43
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +3

Query: 1567 NDSKTVVNFLRKNIFTRFGTPRVLISDGGKHFCNNFLETVLKKYNIKHKVATPYHPQTSG 1626
            ND+K V+ FL+KNIF+RFG PR+LISDGG HF  + L  VLK  +++HKV T YHPQT+G
Sbjct: 3    NDAKIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNG 182

Query: 1627 QVEVSN 1632
            Q +VSN
Sbjct: 183  QAKVSN 200


>BI321666 
          Length = 430

 Score =  157 bits (398), Expect = 3e-38
 Identities = 74/134 (55%), Positives = 96/134 (71%), Gaps = 4/134 (2%)
 Frame = +2

Query: 1478 AAKVLQSGFWWPTLFKDCHDFVRRCDNCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMG 1537
            +  VLQS F+ P++FKD +   + C+ CQRT S+SKRNE+PL  I+EVE FD WGIDF+G
Sbjct: 5    STNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFVG 184

Query: 1538 PFPPSSSYLHILVCVDYVTKWVEAIPCVANDSKTVVNFLRKNIFTRFGTPRVLISDGGKH 1597
            PFPPS S  +ILV VDYV+KWVEA+ C  +D+K V+ FL+K IF+R G P VLI +GG H
Sbjct: 185  PFPPSFSNEYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGGSH 364

Query: 1598 FCN----NFLETVL 1607
             CN     F  T++
Sbjct: 365  LCNA*LARFFNTIM 406


>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
          Length = 1144

 Score =  152 bits (385), Expect = 1e-36
 Identities = 114/376 (30%), Positives = 175/376 (46%), Gaps = 19/376 (5%)
 Frame = -3

Query: 4    RRNSEDLEY---DPEIEKTARANRKAVRVSKSVPPGTRT---PIPDPTLIETETTTPPPV 57
            RRNSE +     D E   T     ++   S S P    +   P+ DP + E         
Sbjct: 1073 RRNSERVRKFF*DLEAVATPEEEPQSSEASSSFPIAGHSHIEPVEDPIMAEE-------- 918

Query: 58   ITMEEGDPPPARPKLGDYGLANHRGRLTHVFRP-ANPVAFEIKASVQNGLKERQFDGTGT 116
                     P R  L DY  +      T + +P           S+   ++   F G   
Sbjct: 917  ---------PRRVALEDYSSSTVPQFFTSIAQPEVQAQTITYPPSLIQLIQSNFFHGLPN 765

Query: 117  ISPHEHLSHFAETCEFCVPPANVNEDQKKLRLFPFTLIGKAKDWLLTLPNGTIQTWEELE 176
              P+ HL+ + E C   +  A V  D  +L L  F+L G+AK WL +    ++++W+E+ 
Sbjct: 764  EDPYAHLATYIEICN-TIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVV 588

Query: 177  LKFLEKYFPMSKYLDKKQEIASFRQGEGESLYDAWERFNLLLKRCPGHEFSEKQYLQFFT 236
             KFL+KYFP SK  + K  I+SF Q   ESL +A ERF  LL++ P H FSE   L  F 
Sbjct: 587  EKFLKKYFPESKTAEGKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSEPIQLNIFI 408

Query: 237  EGLTHSNRMFLDASAGGSLRVKTDHEVQILIENMASNEY-----RAETKKKERGVFGVSD 291
            + L   ++  +DAS GG +++KT  E   LIE+MA+++      RA    K + +  ++ 
Sbjct: 407  DELRPESKQLVDASVGGKIKMKTPDEAMDLIESMAASDIAILRDRAHIPTK-KSLLELTS 231

Query: 292  TTSILANQAAMNKQIEILTK-------EVHAYQLSNKQQAAAIRCDLCGEGHPNGECVPE 344
              ++LA    ++KQ+E LTK       ++H+ Q S+        C + GE H +G C+P 
Sbjct: 230  QDTLLAQNKLLSKQLETLTKTLSKLPTQLHSAQTSHSSILQVTGCTIFGEAHESGCCIP- 54

Query: 345  GASEEANYVNYQRQNP 360
               + A+ VNY    P
Sbjct: 53   NEEQIAHEVNYMGNRP 6


>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score =  139 bits (351), Expect = 9e-33
 Identities = 73/237 (30%), Positives = 118/237 (48%), Gaps = 2/237 (0%)
 Frame = +1

Query: 1397 RPWFADMANFKAGNIIPDDMEQHQRKKFFKDANHYLWDDPYLFKVSTDGLIRRCVAGEEI 1456
            +PW+ D+  +        ++  + ++   + A  +      L+K + D    RCV   E 
Sbjct: 133  KPWYFDIKRYVISKEYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREA 312

Query: 1457 KNIVWHCHSSAYGGHHSGERTAAKVLQSGFWWPTLFKDCHDFVRRCDNCQRTGSISKRNE 1516
             +++   H  ++G H +G   A K+L++G++W T+  DC   VR+C  CQ          
Sbjct: 313  NHMIEEVHEGSFGTHANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPP 492

Query: 1517 MPLTGIIEVEPFDCWGIDFMGPFPPSSSYLH--ILVCVDYVTKWVEAIPCVANDSKTVVN 1574
             PL  +    PF  WGID +G   P +S  H  ILV +DY TKWVEA          VV 
Sbjct: 493  HPLNVMSSPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVR 672

Query: 1575 FLRKNIFTRFGTPRVLISDGGKHFCNNFLETVLKKYNIKHKVATPYHPQTSGQVEVS 1631
            F++K I  R+G PR +I+D G +  N  +  + +++ I+H   TPY P+ +  VEV+
Sbjct: 673  FIKKEIICRYGLPRKIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843


>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
          Length = 482

 Score =  135 bits (339), Expect = 2e-31
 Identities = 59/78 (75%), Positives = 70/78 (89%)
 Frame = -3

Query: 1620 YHPQTSGQVEVSNRQLKQILEKTVASSRKDWSRKLDDALWAYRIAFKTHLGLSPYQLVFG 1679
            YHPQT+GQ EVSN+++K++LE  V SSRKDW+ KLDDA WAYRIAFKT +GLSP+QLV+G
Sbjct: 234  YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55

Query: 1680 KACHLPVELEHKAYWAIK 1697
            KACHL VELEHKAYWA+K
Sbjct: 54   KACHLSVELEHKAYWALK 1


>TC232398 
          Length = 1054

 Score = 95.1 bits (235), Expect(2) = 6e-31
 Identities = 44/93 (47%), Positives = 67/93 (71%)
 Frame = +1

Query: 675 KKLGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFPADFVILDMAEDEDMPLIL 734
           +++G  + +PTRMTL LAD SI+  FGV+ED+LVKV+ LIF  DFVI+D+ ED ++ LIL
Sbjct: 172 RRIGNQKIEPTRMTLQLADHSITRSFGVVEDILVKVHQLIFLVDFVIMDIEEDAEIRLIL 351

Query: 735 GRPFLATGRALIDVEMGQLMLRFHNEQVVFNIF 767
           G PF+ T + ++D+  G L +   +++  FN+F
Sbjct: 352 GWPFMVTAKCVVDMGKGNLEMSVEDQKATFNLF 450



 Score = 59.7 bits (143), Expect(2) = 6e-31
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 584 LQVNIPFGDALDQMPVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKLPPKLKDPG 642
           L++ IPFG+ + QMP+Y KF+K++L  + K  + E I + E C A++Q KLPPK KD G
Sbjct: 2   LEITIPFGERIQQMPLYKKFLKDILIKKGKYINSETIVVGEYCRALIQ-KLPPKFKDLG 175


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score =  126 bits (316), Expect = 1e-28
 Identities = 61/141 (43%), Positives = 89/141 (62%)
 Frame = +3

Query: 1006 RMCIDYRRLNTATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSGYNQIAVAPEDQEKTAF 1065
            RMC+DYR LN A+ KD+FPLP +D ++  +A  A + F+DG+SGYNQI +APED EKT F
Sbjct: 3    RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182

Query: 1066 TCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSVFGKSFDQCLFHL 1125
               +G F Y+ M FGL    AT+ R M+++F DM+ K IE ++D+     +  ++ L +L
Sbjct: 183  ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362

Query: 1126 NAVLKRCTETNLILNWEKCHF 1146
              +  +  +  L LN  KC F
Sbjct: 363  QNLFGQLRKYRLRLNPRKCVF 425


>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
           regulator, partial (3%)
          Length = 1374

 Score =  124 bits (312), Expect = 3e-28
 Identities = 74/195 (37%), Positives = 109/195 (54%), Gaps = 4/195 (2%)
 Frame = +2

Query: 110 QFDGTGTISPHEHLSHFAETCEFCVPPANVNEDQKKLRLFPFTLIGKAKDWLLTLPNGTI 169
           +F G     PH+HL  F   C    PP +V ED   L+ FP +L G AKDWL  L   +I
Sbjct: 551 KFHGLVGEDPHKHLKEFHIVCSTMKPP-DVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSI 727

Query: 170 QTWEELELKFLEKYFPMSKYLDKKQEIASFRQGEGESLYDAWERFNLLLKRCPGHEFSEK 229
             W++L+  FLEK+FP S+    +++I+  RQ   ESLY+ WERF      CP H+ S++
Sbjct: 728 FNWDDLKRVFLEKFFPASRTTTIRKDISGIRQLSRESLYEYWERFKKSCASCPHHQISKQ 907

Query: 230 QYLQFFTEGLTHSNRMFLDASAGGSLRVKTDHEVQILIENMASNEYRAETKKKE---RGV 286
             L +F E L++  R  +DA++GG+L   T  E + LI+ MASN  +   +      RGV
Sbjct: 908 LLL*YFYEELSNMKRSMIDAASGGALGDMTPTEARNLIKKMASNSQQFSARNDAIVLRGV 1087

Query: 287 FGV-SDTTSILANQA 300
             V +D++S   N++
Sbjct: 1088HEVATDSSSSTENKS 1132


>BQ133845 
          Length = 389

 Score =  122 bits (305), Expect = 2e-27
 Identities = 60/120 (50%), Positives = 84/120 (70%)
 Frame = +2

Query: 557 KLPYPHLAKKKKKEEGQFKKFMQLFSQLQVNIPFGDALDQMPVYAKFMKEMLTGRRKPKD 616
           ++PYP +   K KE+    KF+ +F +L++ +PF +AL QMP+YA F+K+MLT +     
Sbjct: 32  EVPYPLVPS*KDKEQ-HLAKFLDIFKKLEITLPFEEALQQMPLYANFLKDMLTKKNWYIH 208

Query: 617 DENISLSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCDLGASINLMPLSMMKK 676
            + I +  NCSA++QR LPP   DPG  T+PCSIG V +G+AL DLGASINLMPLSM ++
Sbjct: 209 SDKIVVEGNCSAVIQRILPP*HTDPGFVTMPCSIGEVAVGKALIDLGASINLMPLSMCRQ 388


>TC222094 
          Length = 984

 Score = 75.9 bits (185), Expect(2) = 4e-27
 Identities = 40/83 (48%), Positives = 54/83 (64%)
 Frame = -3

Query: 193 KQEIASFRQGEGESLYDAWERFNLLLKRCPGHEFSEKQYLQFFTEGLTHSNRMFLDASAG 252
           K EI+SF Q   ESL +A +RF+ LL + P H FSE   L  F +G+   ++  LDASAG
Sbjct: 478 KVEISSFHQHPHESLSEALDRFHGLLWKTPTHGFSEPVQLNIFIDGMQPHSKQLLDASAG 299

Query: 253 GSLRVKTDHEVQILIENMASNEY 275
           G +++KT  E   LIENMA+N+Y
Sbjct: 298 GKIKLKTPEEAIELIENMAANDY 230



 Score = 65.9 bits (159), Expect(2) = 4e-27
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
 Frame = -2

Query: 67  PARPKLGDYGLANHRGRLTHVFRPANPVA-FEIKASVQNGLKERQFDGTGTISPHEHLSH 125
           P R  L DY         T + RP    A F    S+   ++   F G  T  P+ HL+ 
Sbjct: 857 PQRMTLEDYSSPIIPQYFTSIARPEVQTANFSYPYSLIQLIQGNLFYGLPTEDPYAHLAT 678

Query: 126 FAETCEFCVPPANVNEDQKKLRLFPFTLIGKAKDWLLTLPNGTIQTWEELELKFLEKYFP 185
           + + C   V    V ED   L LF F+L G+A+ WL +     ++TW E   KFL+KYFP
Sbjct: 677 YIDICN-TVKIVGVPEDAIHLDLFCFSLAGEARTWLRSFKGNNLRTWNEXXEKFLKKYFP 501

Query: 186 MSKYLDKK 193
            SK +  K
Sbjct: 500 ESKTIXXK 477


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score =  114 bits (286), Expect = 3e-25
 Identities = 65/167 (38%), Positives = 96/167 (56%)
 Frame = +1

Query: 1177 PPPMNVKGVRSFLGHAGFYRRFIKDFSKIAKPLCNLLVKETEFDFDVECLNAFSLIKNKL 1236
            P   +V  +RSF G A FYRRF+ +FS +A PL  L+ K   F +  +   AF+L+K KL
Sbjct: 97   PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKL 276

Query: 1237 VTAPIIIAPNWDLHFELMCDASDYAVGAVLGQRKNKFFHAIYYASKVLNESQVNYSTTEK 1296
              AP++  P++   FEL CDAS   V AVL Q      H I Y S+ L+ + +NY T +K
Sbjct: 277  TKAPVLALPDFSKTFELECDASGVGVRAVLLQGG----HPIAYFSEKLHSATLNYPTYDK 444

Query: 1297 ELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWV 1343
            EL A+I A + +  +L+  + ++ +DH +LKY+  K     R  +WV
Sbjct: 445  ELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWV 585


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score =  112 bits (279), Expect = 2e-24
 Identities = 58/133 (43%), Positives = 83/133 (61%)
 Frame = +2

Query: 1041 YCFLDGYSGYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMI 1100
            + F+DG+SGYNQI +A ED EKT F   +G F+YR M FGL    AT+QR M+++F DM+
Sbjct: 2    FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181

Query: 1101 EKNIEVFMDDFSVFGKSFDQCLFHLNAVLKRCTETNLILNWEKCHFMVTEGIVLGHKISS 1160
             K IEV++DD     ++  + L +L  +  R  +  L LN  KC F V  G +LG  +S 
Sbjct: 182  HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361

Query: 1161 KGIEVDQAKIEVI 1173
            KGIE+D  K++ +
Sbjct: 362  KGIEIDPEKVKAL 400


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score = 83.6 bits (205), Expect = 7e-16
 Identities = 56/182 (30%), Positives = 93/182 (50%), Gaps = 2/182 (1%)
 Frame = +1

Query: 1629 EVSNRQLKQILEKTVASSRKDWSRKLDDALWAYRIAFKTHLGLSPYQLVFGKACHLPVEL 1688
            E +N+ +K+I++K   S  KDW   L  AL  YR + +T  G +P+ LV+G    LP E+
Sbjct: 1    EAANKNIKKIIQKMTVSY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177

Query: 1689 EHKAYWAIKALNFDQTLAGKKRLLKLNELEEMRLGAYENAVIYKERTKRYHDKGLVRREF 1748
            E  +   +      ++   + R  +LN +E  RL A  +  +Y++R K   DK +  R+F
Sbjct: 178  EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357

Query: 1749 YVGQLVL-LFNSRLKLFPGKLKSKWSGPFMIESISPYGAVELSK-PGEPGTFKVNAQRIK 1806
            + G LVL   +  +K   GK    + GPF+++     GA+ L+   GE     +N+  +K
Sbjct: 358  HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVK 537

Query: 1807 PY 1808
             Y
Sbjct: 538  RY 543


>AW570005 
          Length = 413

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 51/142 (35%), Positives = 76/142 (52%)
 Frame = -2

Query: 1177 PPPMNVKGVRSFLGHAGFYRRFIKDFSKIAKPLCNLLVKETEFDFDVECLNAFSLIKNKL 1236
            PPP   + +R FL   GFYRRFIK ++ +A PL +LL K++ F +  E   AF  +KN +
Sbjct: 412  PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS-FVWSPEADVAFQALKNVV 236

Query: 1237 VTAPIIIAPNWDLHFELMCDASDYAVGAVLGQRKNKFFHAIYYASKVLNESQVNYSTTEK 1296
                ++  P++   F +  DAS   +GAVL Q      H I + SK      V  ST   
Sbjct: 235  TNTLVLALPDFTKPFTVETDASGSDMGAVLSQEG----HPIAFFSKEFCPKLVRSSTYVH 68

Query: 1297 ELLAVIFALEKFRSYLIGSKVI 1318
            EL A+   ++K+R YL+G  ++
Sbjct: 67   ELAAITNVVKKWRQYLLGHHLV 2


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,839,035
Number of Sequences: 63676
Number of extensions: 1175163
Number of successful extensions: 7591
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 6742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7416
length of query: 1825
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1714
effective length of database: 5,571,596
effective search space: 9549715544
effective search space used: 9549715544
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)