BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146759.1 + phase: 0 /pseudo
(188 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215774 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH,... 82 2e-21
TC232508 similar to GB|BAC55960.1|28071265|AB087408 actin bindin... 30 0.66
AI496114 28 1.9
TC203379 similar to GB|BAC55960.1|28071265|AB087408 actin bindin... 28 1.9
CD400971 27 4.3
TC208334 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prot... 27 4.3
TC206916 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, parti... 27 5.6
BG508062 27 5.6
TC205896 similar to UP|Q9SP12 (Q9SP12) 1-Cys peroxiredoxin, part... 27 5.6
TC215125 GB|AAP47435.1|32331815|AY164861 RTNLB25 {Glycine max;} ... 27 7.3
TC210998 weakly similar to UP|Q9FY63 (Q9FY63) Ser/thr specific p... 27 7.3
BG510198 27 7.3
AW759423 26 9.5
TC230695 similar to PIR|D86282|D86282 protein F10B6.26 [imported... 26 9.5
TC228918 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (4%) 26 9.5
>TC215774 similar to UP|Q94ES0 (Q94ES0) AAA-metalloprotease FtsH, partial
(79%)
Length = 2084
Score = 82.4 bits (202), Expect(2) = 2e-21
Identities = 44/79 (55%), Positives = 57/79 (71%), Gaps = 16/79 (20%)
Frame = +3
Query: 54 KNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKN-----NESEVA-----------K 97
+ ++ISFQEFK K+LEPGLVDHIVVSNK +AK+YV+N ++EVA +
Sbjct: 3 EQKQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRNTPLNQTDNEVAQGTQPAIGSGGQ 182
Query: 98 YKYYFKIGSVDSFERKLKK 116
YKYYF IGSV+SFE KL++
Sbjct: 183 YKYYFNIGSVESFEEKLEE 239
Score = 36.2 bits (82), Expect(2) = 2e-21
Identities = 35/92 (38%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Frame = +1
Query: 112 RKLKKD*ALIIMILYVLLILLKPTGFR--------CFSYYLHSCWLSE-------FSFII 156
RK KK A +MIL + ILLK G R C + L W E + +
Sbjct: 235 RKRKKLWAFTLMILCLSHILLKWFGTRN**GLLQHCCFWDLSCIWEGECKVELVLVAVVA 414
Query: 157 RNVLMEC*TLEKHMLL**TNMPKTRKQGSVLL 188
V +E T EKH LL *T MPKTR +LL
Sbjct: 415 ARVPVEYST*EKHQLLK*TKMPKTRSILKMLL 510
>TC232508 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
{Arabidopsis thaliana;} , partial (25%)
Length = 1050
Score = 30.0 bits (66), Expect = 0.66
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 26 QEALKKLGTLMTLIGGLILSFFYFRPFGKNQEISFQEFKIKV---LEPGLVDHIVVSNKE 82
Q AL+K+ +L+ + I + R ++ ++EF I V L+ GLV I +S+ +
Sbjct: 428 QTALQKMYSLLEKVEQSIYALLRTRDMAISR---YKEFGIPVTWLLDTGLVGKIKLSSVQ 598
Query: 83 LAKIYVKNNESEV 95
LA +Y+K SE+
Sbjct: 599 LANMYMKRVASEL 637
>AI496114
Length = 352
Score = 28.5 bits (62), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +2
Query: 139 CFSYYLHSCWLSEFSFIIRNVLMEC*TLEKHM 170
CF++ H+CW+ F ++EC T KH+
Sbjct: 50 CFAHLCHACWMHSF-------VLECTTEAKHV 124
>TC203379 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
{Arabidopsis thaliana;} , partial (29%)
Length = 1246
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 26 QEALKKLGTLMTLIGGLILSFFYFRPFGKNQEISFQEFKIKV---LEPGLVDHIVVSNKE 82
+ ALKK+ +L+ + + + R ++ ++EF I V ++ G+V I +S+ +
Sbjct: 599 EAALKKMYSLLEKVEQSVYALLRTRDMAISR---YKEFGIPVNWLMDSGVVGKIKLSSVQ 769
Query: 83 LAKIYVKNNESEV 95
LAK Y+K SE+
Sbjct: 770 LAKKYMKRVASEL 808
>CD400971
Length = 628
Score = 27.3 bits (59), Expect = 4.3
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Frame = -3
Query: 53 GKNQEISFQEFKIKVLEPG------LVDHIVVSNKELAKIYVKNNESEVAKYKYYFKIGS 106
G ++ + ++ K K+ EP +VD + + + +V F GS
Sbjct: 614 GNSKRVGTEKQKKKIWEPSNSSHHKVVDDVTDEHGSFPNVSFTKGIDDVLD----FGAGS 447
Query: 107 -VDSFERKLKKD*ALIIMILYVLLILLKPTGFRCFSYYLH 145
DS + + D*A I+M+L V + GFR F ++L+
Sbjct: 446 NSDSLLKTHEFD*ATIVMVLVVHNLTWMLLGFRSFCFFLN 327
>TC208334 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (86%)
Length = 1578
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 8/65 (12%)
Frame = +3
Query: 104 IGSVDSF-----ERKLKKD*ALIIMILYVLLILLKP---TGFRCFSYYLHSCWLSEFSFI 155
+G V SF + +L K L M YV++ L P T + + +CW+ FSF+
Sbjct: 1137 LGKVKSFP*CHSKTRLMKQIYLKWMSSYVIVASLLPSPNTKGEVLGHKVFACWICTFSFL 1316
Query: 156 IRNVL 160
R L
Sbjct: 1317 TREFL 1331
>TC206916 similar to UP|Q945M8 (Q945M8) AT4g31460/F3L17_30, partial (70%)
Length = 963
Score = 26.9 bits (58), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = -1
Query: 38 LIGGLILSFFYFRPFGKNQEISFQEFKIK 66
+I L+ SFF+F PFG+ + FQ F I+
Sbjct: 228 IIPSLLPSFFFFSPFGETKP-*FQSFSIR 145
>BG508062
Length = 429
Score = 26.9 bits (58), Expect = 5.6
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 6/35 (17%)
Frame = +1
Query: 71 GLVDHIVVS------NKELAKIYVKNNESEVAKYK 99
GLV+H++ ++E+A VKNN+ V +YK
Sbjct: 109 GLVNHVIEEAELLKKSREIADAIVKNNQDLVLRYK 213
>TC205896 similar to UP|Q9SP12 (Q9SP12) 1-Cys peroxiredoxin, partial (75%)
Length = 714
Score = 26.9 bits (58), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 135 TGFRCFSYYLHSCWLSEFSF 154
T F+ FS+Y+H WL +F F
Sbjct: 131 T*FKYFSFYIHIWWLLDFFF 190
>TC215125 GB|AAP47435.1|32331815|AY164861 RTNLB25 {Glycine max;} , partial
(61%)
Length = 851
Score = 26.6 bits (57), Expect = 7.3
Identities = 13/42 (30%), Positives = 19/42 (44%)
Frame = +1
Query: 113 KLKKD*ALIIMILYVLLILLKPTGFRCFSYYLHSCWLSEFSF 154
+ KK+ + +Y L+ KP CF + L C FSF
Sbjct: 586 RTKKEATTSVFFIY*SLVSFKPYTKPCFGFSLGGCGTRGFSF 711
>TC210998 weakly similar to UP|Q9FY63 (Q9FY63) Ser/thr specific protein
kinase-like protein, partial (20%)
Length = 711
Score = 26.6 bits (57), Expect = 7.3
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +3
Query: 100 YYFKIGSVDSFERKLKKD*ALIIMILYVLLILLKPTGFRCFSYYL 144
YYF I ++ K L++M+L +LLIL KPT +Y L
Sbjct: 18 YYFYIFIFMFS*KETMKTKLLLLMLLMLLLILHKPTWILASAYPL 152
>BG510198
Length = 442
Score = 26.6 bits (57), Expect = 7.3
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = +1
Query: 70 PGLVDHIVVSNKELAKIYVKNNESEV 95
PG++ H+++ N+ +KI + N SEV
Sbjct: 25 PGIIKHVLIKNEGKSKITLIRNISEV 102
>AW759423
Length = 316
Score = 26.2 bits (56), Expect = 9.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 125 LYVLLILLKPTGFRCFSYYLHSCWL 149
+++ L+LL+ T F CFS+ L+ WL
Sbjct: 126 VFLSLLLLRDTTFECFSFLLYP-WL 197
>TC230695 similar to PIR|D86282|D86282 protein F10B6.26 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(80%)
Length = 874
Score = 26.2 bits (56), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (51%)
Frame = +1
Query: 120 LIIMILYVLLILLKPTGFRCFSYYLHSCWLSEFSFIIRNVLMEC 163
LI +I+++ L+ P S +L C L EFSF+ N M C
Sbjct: 70 LINLIIFIPLLFFSPLNSLFHSCFL--CGLFEFSFLQFN*KMAC 195
>TC228918 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (4%)
Length = 1181
Score = 26.2 bits (56), Expect = 9.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 90 NNESEVAKYKYYFKIGSVDSFERKLKKD*ALIIM--ILYVLLILL 132
N + E +KYKY+ + +V KK *+L M + +VL++LL
Sbjct: 911 NEKHEQSKYKYFIRKATVRGMN---KKK*SLFCMLSLTFVLIVLL 1036
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.337 0.148 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,735,860
Number of Sequences: 63676
Number of extensions: 102365
Number of successful extensions: 1141
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of query: 188
length of database: 12,639,632
effective HSP length: 92
effective length of query: 96
effective length of database: 6,781,440
effective search space: 651018240
effective search space used: 651018240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146759.1