TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146757.5 - phase: 0 /pseudo
         (588 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC212893 similar to UP|Q84VX1 (Q84VX1) At4g38650, partial (17%)        87  3e-26
AW755655                                                               39  0.008
TC216291 similar to UP|Q9MB29 (Q9MB29) Quinolinate phosphoribosy...    33  0.46
BI472169 homologue to GP|11036869|gb| PxORF74 peptide {Plutella ...    32  0.79
TC210321 weakly similar to GB|AAQ89609.1|37201988|BT010587 At3g1...    30  2.3
TC231236                                                               30  3.0
TC217278 similar to UP|Q9LUB2 (Q9LUB2) Indole-3-glycerol phospha...    30  3.9
TC218007 similar to UP|Q940M8 (Q940M8) At1g73650/F25P22_7, parti...    29  6.7
TC208967                                                               29  6.7
TC216423 UP|O49857 (O49857) Epoxide hydrolase, complete                29  6.7
TC206366                                                               28  8.7

>TC212893 similar to UP|Q84VX1 (Q84VX1) At4g38650, partial (17%)
          Length = 609

 Score = 87.4 bits (215), Expect(2) = 3e-26
 Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
 Frame = +3

Query: 446 ASLDTLRATGLPIWITELDVAS---QPNQALYFEQVLREAHSHPGIQGIVMWTAWSPQGC 502
           A LD L   GLPIW+TE+D++    +  QA Y E+VLRE  SHP + GI++WTA+ P GC
Sbjct: 3   AILDKLATLGLPIWLTEVDISKTLDRDAQANYLEEVLREGFSHPSVNGIMLWTAFHPNGC 182

Query: 503 YRICLTDNNFKNLPA 517
           Y++CLTDN F+  P+
Sbjct: 183 YQMCLTDNYFQEPPS 227



 Score = 50.1 bits (118), Expect(2) = 3e-26
 Identities = 25/57 (43%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
 Frame = +1

Query: 512 FKNLPAGDVVDQLINEWGRAEKSGTTDQNGYFEASLFHGDYEIEINHPIK-KKSNFT 567
           F+NLPAGDVVD+L+ EW  +   G TD +G +    F G+Y I + +  K  KS F+
Sbjct: 211 FRNLPAGDVVDKLVEEWQISRVEGVTDVHGSYSFYGFLGEYRISVKYGNKTTKSTFS 381


>AW755655 
          Length = 145

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 15/28 (53%), Positives = 21/28 (74%)
 Frame = +3

Query: 97  HSRNQPHDSVSQKIYLRKGLHYSLSAWI 124
           H+R  P DS SQK+ L+KG+ Y+ SAW+
Sbjct: 54  HNRTHPLDSFSQKVQLKKGMLYTFSAWL 137


>TC216291 similar to UP|Q9MB29 (Q9MB29) Quinolinate
           phosphoribosyltransferase, partial (85%)
          Length = 1203

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 21/76 (27%), Positives = 36/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 162 GLIADTTGVAELYFESNNTSVEIWVDNVSLQPFTE-KQWRSHQELSIEKDRKRKVVVRAV 220
           G +AD     +LY E NN  +E+ V+  +L+   E   + S  + S+ +     +VV   
Sbjct: 872 GGVADALKAVDLYLEQNNLQMEVEVETRTLEEVEEVLHYSSQTKTSLTRIMLDNMVV--- 1042

Query: 221 NEQGHPLPNASISLTM 236
                PLPN  + ++M
Sbjct: 1043-----PLPNGDVDISM 1075


>BI472169 homologue to GP|11036869|gb| PxORF74 peptide {Plutella xylostella
           granulovirus}, partial (5%)
          Length = 391

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 15/41 (36%), Positives = 24/41 (57%)
 Frame = +2

Query: 153 PNCWSMLKGGLIADTTGVAELYFESNNTSVEIWVDNVSLQP 193
           PNCWS++ GG I    G  E  F+   T++ ++V+N   +P
Sbjct: 68  PNCWSIVAGGYI--HKGEMEKAFKCFKTALSLYVENKGWKP 184


>TC210321 weakly similar to GB|AAQ89609.1|37201988|BT010587 At3g13650
           {Arabidopsis thaliana;} , partial (48%)
          Length = 572

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/40 (27%), Positives = 20/40 (49%)
 Frame = -1

Query: 52  HPQKPQYNGGIIKNPELNDGLQGWTTFGDAIIEHRKSLGN 91
           +P +P+  GG++     NDG  G    G+ ++E    + N
Sbjct: 278 YPHRPEGGGGVVLGQRWNDGNTGSVVRGEGLVEVESEMAN 159


>TC231236 
          Length = 1393

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
 Frame = +2

Query: 53  PQKPQYNGGIIKNPELNDGLQGWTTFGDAIIEHRKSLGNK-----FVVTHS----RNQPH 103
           P+  +  G I+  P   +G+  WT  G  ++E+ KS G K      VV H     R    
Sbjct: 146 PKPSELKGSIVTTP---NGIPHWTISG--MVEYIKS-GQKQGDMVLVVPHGTYAVRLGNE 307

Query: 104 DSVSQKIYLRKGLHYSLS 121
            S+ QKI + KG+ YSL+
Sbjct: 308 ASIKQKIQVVKGMFYSLT 361


>TC217278 similar to UP|Q9LUB2 (Q9LUB2) Indole-3-glycerol phosphate synthase
           (AT5g48220/MIF21_11), partial (82%)
          Length = 1418

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 5/68 (7%)
 Frame = +2

Query: 405 STPPTYIEKI-----KEIQSVNSQLPLGIGLESHFPNSPPNLPYMRASLDTLRATGLPIW 459
           +TP   +E+I      E+  +  + PLG+ L+    N+PP   ++ A       TGLP  
Sbjct: 332 NTPRNILEEIVWNKDTEVSHLKERKPLGV-LKKALENAPPARDFIGALKAANERTGLPGL 508

Query: 460 ITELDVAS 467
           I E+  AS
Sbjct: 509 IAEVKKAS 532


>TC218007 similar to UP|Q940M8 (Q940M8) At1g73650/F25P22_7, partial (12%)
          Length = 772

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 409 TYIEKIKEIQSVNSQLPLGIGLESHFPN 436
           TY+ + K+I+ + S+    I L+SH PN
Sbjct: 546 TYLRENKQIRKIKSRRKAAIALQSHIPN 463


>TC208967 
          Length = 794

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 53  PQKPQYNGGIIKNPELNDGLQGWTTFGDAIIE 84
           P +P+  GG++     NDG +G    G+ ++E
Sbjct: 314 PHQPEVGGGVVLGQRRNDGDRGGVASGEPLVE 219


>TC216423 UP|O49857 (O49857) Epoxide hydrolase, complete
          Length = 1343

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/87 (25%), Positives = 36/87 (41%)
 Frame = +1

Query: 380 VHNIDGQTTLFMNEYNTIEDSRDGLSTPPTYIEKIKEIQSVNSQLPLGIGLESHFPNSPP 439
           +  +DG   L+ ++Y      + G        E   ++  V ++  L   L +  P  PP
Sbjct: 550 IRTVDGMRALYGDDYYVCRFQKPG--------EMEAQMAEVGTEYVLENILTTRNPG-PP 702

Query: 440 NLPYMRASLDTLRATGLPIWITELDVA 466
            LP  R   +      LP W+TE D+A
Sbjct: 703 ILPKGRFQFNPEMPNTLPSWLTEEDLA 783


>TC206366 
          Length = 610

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 371 NFSARMFNEVHNIDGQTT--LFMNEYNTIEDSRD 402
           +F AR+FN++HN+ G T+      + N +  SRD
Sbjct: 75  SFRARLFNKIHNLIGDTSKKYDFEDSNHVTSSRD 176


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,318,347
Number of Sequences: 63676
Number of extensions: 381919
Number of successful extensions: 1774
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of query: 588
length of database: 12,639,632
effective HSP length: 103
effective length of query: 485
effective length of database: 6,081,004
effective search space: 2949286940
effective search space used: 2949286940
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)