BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146757.4 - phase: 0 /pseudo
(755 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 138 8e-33
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 97 8e-32
CO982349 116 4e-26
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 89 9e-18
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 83 5e-16
BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis ... 82 7e-16
BM891241 63 2e-14
TC212765 61 4e-14
BI972659 74 2e-13
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 58 5e-13
BM309783 59 7e-13
CF922212 69 1e-11
BM891637 65 1e-10
AW757033 64 2e-10
BU548706 57 4e-08
AI496436 55 5e-08
BI315739 52 1e-06
TC234526 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, ... 45 9e-05
TC222765 45 1e-04
TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance... 42 0.001
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 138 bits (348), Expect = 8e-33
Identities = 77/237 (32%), Positives = 127/237 (53%)
Frame = +1
Query: 6 IMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQI 65
++ NG T F RG+RQGDPL+P+LF I + L+ ++ VE + P G G I
Sbjct: 202 VLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLVGANGVPI 381
Query: 66 SHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDIL 125
S L +ADD + F EA+ E + L F S +IN K+C + V Q +++
Sbjct: 382 SILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSC-FGVFGVTDQWKQEAA 558
Query: 126 HHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLAKSV 185
++ + + +YLG + ++ I+ K + KL+ WK + ++ GR+TL KSV
Sbjct: 559 NYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGGRVTLIKSV 738
Query: 186 ISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGL 242
+++IP Y + ++P+++ D++ KI R F+WG +K I W+ CLPK GG+
Sbjct: 739 LTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPKERGGI 909
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 96.7 bits (239), Expect(2) = 8e-32
Identities = 46/103 (44%), Positives = 68/103 (65%)
Frame = -3
Query: 6 IMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQI 65
++WNGE D F G+RQ DP++PYLFV+C++RLSH+I + K ++ R G I
Sbjct: 644 LLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKKL*RSIQVNRGGLLI 465
Query: 66 SHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKT 108
SHL F DDL+LF EA+++Q + L++F +SG K+N +KT
Sbjct: 464 SHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKT 336
Score = 59.7 bits (143), Expect(2) = 8e-32
Identities = 29/85 (34%), Positives = 46/85 (54%)
Frame = -2
Query: 112 FSKNVDTQLREDILHHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQ 171
FSKNV+ + EDI G + LG YLG + F+ I++K+ + + WK
Sbjct: 324 FSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSN 145
Query: 172 CLTLAGRITLAKSVISTIPYYHMQY 196
L++ GR+TL K V+ +P + MQ+
Sbjct: 144 LLSMVGRLTLTK*VV*ALPSHIMQF 70
>CO982349
Length = 795
Score = 116 bits (290), Expect = 4e-26
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 3/234 (1%)
Frame = +3
Query: 6 IMWNGEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQI 65
I+ N + F RG+RQGDPL+P LF I + L+ ++ + V+ K + G+ +
Sbjct: 105 ILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFNSFLVGKNKEPV 284
Query: 66 SHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDIL 125
S L +ADD + F EA++E + L F ASG KIN ++ D +E
Sbjct: 285 SILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAIWKPDHWCKEA-- 458
Query: 126 HHTGFNQVNSLGM---YLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLA 182
F + L M YLG + R + I+ K ++KL WKQ+ ++L GR+TL
Sbjct: 459 --AEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHISLGGRVTLI 632
Query: 183 KSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLP 236
++++ +P Y + + P + ++ IQR F+WG R+ + W+ CLP
Sbjct: 633 NAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETVCLP 794
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 88.6 bits (218), Expect = 9e-18
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Frame = +2
Query: 196 YAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGLGFRQTHKMNEAFL 255
+ +P I +++ +QR F+WG RK ++W CLPKA GGLG + N L
Sbjct: 8 FFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLL 187
Query: 256 MKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKALVNIWN-----DFKG 310
K W+L ++ W +VL+SKYG L ++ DS WK L+ K
Sbjct: 188 GKWRWDLFYIQQEPWAKVLQSKYGGWRALEEG-SSGSKDSAWWKDLIKTQQLQRNIPLKR 364
Query: 311 HVVWNIGDGRNTNFWLDKWVPNNESL 336
+W +G G FW D W + SL
Sbjct: 365 ETIWKVGGGDRIKFWEDLWTNTDLSL 442
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 82.8 bits (203), Expect = 5e-16
Identities = 36/99 (36%), Positives = 54/99 (54%)
Frame = +2
Query: 175 LAGRITLAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCC 234
+ GR+TL KSV+S +P + + KIP+ I D++ +QR F+WG + + + W C
Sbjct: 2 MGGRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADIC 181
Query: 235 LPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRV 273
PK DGGLG + N A + +W L N LW R+
Sbjct: 182 NPKIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis thaliana},
partial (1%)
Length = 422
Score = 82.4 bits (202), Expect = 7e-16
Identities = 41/108 (37%), Positives = 57/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 224 KAHLISWDVCCLPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNND 283
K H SW C PK GGLG R MN++ LMK N+ P DL RV+RSKY D
Sbjct: 3 KVHWTSWKALCSPKKSGGLGLRLLSHMNKSLLMKST*NMCTKPNDL*VRVVRSKYK*GKD 182
Query: 284 LIASINAHPYDSPLWKALVNIWNDF-KGHVVWNIGDGRNTNFWLDKWV 330
++ I+ + W+ +V+ W ++ IG+GR+ +FW D WV
Sbjct: 183 ILP*IDPKKTGTNFWQGIVHCWEKITHDNIARKIGNGRSVHFWKDVWV 326
>BM891241
Length = 407
Score = 62.8 bits (151), Expect(2) = 2e-14
Identities = 29/67 (43%), Positives = 39/67 (57%)
Frame = -2
Query: 217 GDSDQGRKAHLISWDVCCLPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRS 276
GD D +K + W+V CLPK GGLG + K N A L K +W L + + LW R++ S
Sbjct: 403 GDHDH-KKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 277 KYGRNND 283
KYG +D
Sbjct: 226 KYGGWSD 206
Score = 34.7 bits (78), Expect(2) = 2e-14
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 308 FKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYM 345
F ++ W +G G NFW DKW+ + +L NQ ++
Sbjct: 120 FHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYNQLFL 7
>TC212765
Length = 637
Score = 60.8 bits (146), Expect(2) = 4e-14
Identities = 40/120 (33%), Positives = 57/120 (47%)
Frame = +3
Query: 30 PYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQISHLLFADDLLLFAEASIEQAHCVL 89
PYLFV+CM+RL+ I D W P+ + +L+ DD+ LF A + A+
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 90 HCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDILHHTGFNQVNSLGMYLGANLAPGRS 149
L F Q G K+N +K+ +Y S + LR+ I + SLG YL GRS
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIHGRS 374
Score = 35.8 bits (81), Expect(2) = 4e-14
Identities = 20/65 (30%), Positives = 29/65 (43%)
Frame = +2
Query: 165 LNGWKQQCLTLAGRITLAKSVISTIPYYHMQYAKIPKTICDEIDKIQRGFIWGDSDQGRK 224
L WK + L A + L V+ P Y M+ + +P++I IDK R IW
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIWNKVGASLS 595
Query: 225 AHLIS 229
H +S
Sbjct: 596 WHSVS 610
>BI972659
Length = 453
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 58/92 (63%)
Frame = +1
Query: 139 YLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLAKSVISTIPYYHMQYAK 198
YLG +A S R + ++NK ++KL+ W Q+ L++ GR+TL KSV++ +P Y + + K
Sbjct: 184 YLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFK 363
Query: 199 IPKTICDEIDKIQRGFIWGDSDQGRKAHLISW 230
IP+ I D++ +QR F+WG + + ISW
Sbjct: 364 IPQRIVDKLVSLQRTFMWGGNQHHNR---ISW 450
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 58.2 bits (139), Expect(2) = 5e-13
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Frame = -2
Query: 66 SHLLFADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLR--ED 123
SH++ ADD+++F + + H +++ ++ + GQ I+++K+ ++ +LR D
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRLRVISD 272
Query: 124 ILHH----TGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRI 179
+L + FN Y G + G+ R + +KI+ KL WK L++ GRI
Sbjct: 271 LLQYFHSDIPFN-------YFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRI 113
Query: 180 TLAKSVISTIPYY 192
L SVI + Y
Sbjct: 112 QLVNSVIHGMLLY 74
Score = 34.7 bits (78), Expect(2) = 5e-13
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 9 NGEKTDTFFSTRGIRQGDPLSPYLF 33
NGE F RG+RQGDPLSP L+
Sbjct: 618 NGEPVGFFSCQRGVRQGDPLSPSLY 544
>BM309783
Length = 433
Score = 59.3 bits (142), Expect(2) = 7e-13
Identities = 32/81 (39%), Positives = 41/81 (50%)
Frame = +2
Query: 217 GDSDQGRKAHLISWDVCCLPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRS 276
GD+D GRK H++ W +P GG+G MN+A LMKI W LW VLR
Sbjct: 8 GDNDGGRKHHVVGWKAMIMP*HSGGVGMCDLTIMNQACLMKIGWAFRMGDGSLWADVLRG 187
Query: 277 KYGRNNDLIASINAHPYDSPL 297
YG+N L S+ D P+
Sbjct: 188 *YGQN*FLRDSVVVKSTDPPV 250
Score = 33.1 bits (74), Expect(2) = 7e-13
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 296 PLWKALVNIWNDFKGHVVWNIGDGRNTNFWLDKWV 330
PLWK++V + + W + +GR+ W DKWV
Sbjct: 243 PLWKSIVKL*PNIINVERWIVNNGRSIRAW*DKWV 347
>CF922212
Length = 445
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/86 (39%), Positives = 48/86 (55%)
Frame = -2
Query: 199 IPKTICDEIDKIQRGFIWGDSDQGRKAHLISWDVCCLPKADGGLGFRQTHKMNEAFLMKI 258
+P + D++ ++Q+ F+WG +K ++WD CLPK GLG R K N A L K
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 259 LWNLIKNPEDLWCRVLRSKYGRNNDL 284
WNL + +L RVL SKY R +L
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNL 184
>BM891637
Length = 427
Score = 65.1 bits (157), Expect = 1e-10
Identities = 41/122 (33%), Positives = 53/122 (42%), Gaps = 6/122 (4%)
Frame = -1
Query: 221 QGRKAHLISWDVCCLPKADGGLGFRQTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGR 280
+G+K ISW CC GGLG + +N A L+K W + P LW R+L SKY
Sbjct: 424 EGKKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKG 245
Query: 281 NNDLIASINAHPYDSPLWKALVNIWNDFKGHVV------WNIGDGRNTNFWLDKWVPNNE 334
L + Y SP W L I N + + W +G G FW D WV +
Sbjct: 244 WRGLDQGPQKY-YFSPWWADLRAI-NQHQSMIAASNQFCWKVGRGDQILFWEDSWVDDGT 71
Query: 335 SL 336
L
Sbjct: 70 PL 65
>AW757033
Length = 441
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/96 (37%), Positives = 53/96 (54%)
Frame = -2
Query: 13 TDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQISHLLFAD 72
T F RG+RQGDPL+P LF I + L+ ++ + V ++ G+Y +S L +AD
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYAD 261
Query: 73 DLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKT 108
D + F EA++E + L F ASG KIN K+
Sbjct: 260 DTIFFGEATMENVRVIKTILRGFELASGLKINFAKS 153
>BU548706
Length = 647
Score = 56.6 bits (135), Expect = 4e-08
Identities = 34/117 (29%), Positives = 58/117 (49%)
Frame = +2
Query: 335 SLMSIGNQTYMDITLSVRDVLSPSGDWNIDFLINNLPTNTVNQILALSIPNDDDGPDTIG 394
+L S+G+ D L V + + G WN DFL LP++ V I + +P+ ++G D++
Sbjct: 185 ALKSLGDS---DWDLKVIEATAQDGSWNYDFLEEMLPSHVVCIICGMLLPSIENGNDSLI 355
Query: 395 WGGTNTHHFTVQSAYSLQHQDCPILEGDWKSIWKWHGPHRIQTFIWLDTHERILTNF 451
+ +F + S Y +KSIW GP R++ F+W H+ + TN+
Sbjct: 356 *KFSTNGNFNLASIYRNXXL--------FKSIWDRPGPKRVKLFLWKSAHDALPTNY 502
>AI496436
Length = 414
Score = 55.1 bits (131), Expect(2) = 5e-08
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Frame = +1
Query: 88 VLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDILHHTGFNQVNS--LGM---YLGA 142
+L C ++ +SG KIN K+ T + DI + +NS L M YLG
Sbjct: 4 ILRCFEL---SSGLKINFAKS------QFGTICKSDIWRKEAADYLNSSVLSMPFVYLGI 156
Query: 143 NLAPGRSLRGKFNHIVNKIQSKLNGWKQQCLTLAGRITLAKSVISTIPYYHMQYAKIPKT 202
+ + +V K + KL WKQ+ ++ GR+TL SV++ +P Y + + +IP
Sbjct: 157 PIGANSRHSDVWEPVVRKCERKLASWKQKYVSFGGRVTLINSVLTALPIYLLSFFRIPDK 336
Query: 203 ICDEID 208
+ D+ D
Sbjct: 337 VVDKAD 354
Score = 20.8 bits (42), Expect(2) = 5e-08
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 210 IQRGFIWGDSDQGRKAHLISW 230
IQR F+WG + RK I+W
Sbjct: 359 IQRRFLWGGDLE*RK---IAW 412
>BI315739
Length = 442
Score = 51.6 bits (122), Expect = 1e-06
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Frame = +3
Query: 27 PLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQISHLLFADDLLLFAEASIEQAH 86
PLSPYLF ICM++L+ +I +V + W P++ R GP IS + + ++ F +
Sbjct: 48 PLSPYLF*ICMEKLAILIQSKVNEETWEPIKISRNGPGISPIYSSQIIVYFL*KPL---- 215
Query: 87 CVLHCLDIFCQASGQKINRNKTCVYFSKNVDTQLREDILHHTGFNQ-----VNSLGMYLG 141
VL K+N + C + V ++ + + GF + L L
Sbjct: 216 -VL------------KLNW*EMCC--NSFV*PEVSRRVFKNPGF*HKRMCLIEKLPGSLL 350
Query: 142 ANLAPGRSLRGKFNHIVNKIQSKLNGWKQQ 171
L GR+ + F H+V+ I ++L+GWK +
Sbjct: 351 **LLAGRTKKEDFAHVVDMINNRLDGWKSK 440
>TC234526 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, partial
(11%)
Length = 603
Score = 45.4 bits (106), Expect = 9e-05
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 395 WGGTNTHHFTVQSAYSLQHQDCPILEGD-WKSIWKWHGPHRIQTFIWLDTHERILTNFQR 453
W G F+V AY +Q + E + WK IWK + P +I+ FIW H+R+ T +
Sbjct: 22 WLGNTLGDFSVSRAYQRINQFHTLNESENWKKIWKINAPQKIRVFIWQLVHKRLTTKKRV 201
Query: 454 SNGVVEYLLIARIVEMKMKLFFMCFAIASTLPRYGFTSF 492
+ + L R V +K C IA L R + F
Sbjct: 202 VSWGIGTLSCHRFVTLKRPFCTSC-VIALWLARMFYFFF 315
>TC222765
Length = 959
Score = 45.1 bits (105), Expect = 1e-04
Identities = 51/244 (20%), Positives = 89/244 (35%), Gaps = 21/244 (8%)
Frame = +3
Query: 246 QTHKMNEAFLMKILWNLIKNPEDLWCRVLRSKYGRNNDLIASINAHPYDSPLWKALVNIW 305
+ ++N+ FLMK+ +L + + LW +VLR KY +I +N S WK
Sbjct: 24 EKRRVNDTFLMKLAQDLCISKDKLWVKVLRRKYDYGKHIIPQMNKATNAST*WK------ 185
Query: 306 NDFKGHVVWNIGDGRNTNFWLDKWVPNNESLMSIGNQTYMDITLSVRDVLSPSGDWNIDF 365
F+ + FW+D+W + ++ D+ + V+ +GDW++ +
Sbjct: 186 --FEAFI--------TLRFWIDEW---------LLKMSHCDL-*KIIYVVFENGDWDVQY 305
Query: 366 LI------NNLPTNTVNQILALSIPNDDDGPDTIGWGGTNTHHFTVQSA-------YSLQ 412
L N P+ T HH V + + LQ
Sbjct: 306 LSYLFQDHGNCPSKTTQ---------------------CG*HHCMVAFSKWKVFLIFRLQ 422
Query: 413 HQDCPI----LEGDWKSIWKWHGPHRIQTFIWLDTHERILTN----FQRSNGVVEYLLIA 464
+ + EG + IW+W + IW LTN F + +V ++L
Sbjct: 423 FRSFYLG*LNEEGIFDLIWQWSDQECFRVIIWKIGQRAFLTNAFLFFTKLFRIVPFVLTL 602
Query: 465 RIVE 468
+ E
Sbjct: 603 NVAE 614
>TC233219 weakly similar to UP|Q8LKI9 (Q8LKI9) NBS/LRR resistance
protein-like protein (Fragment), partial (74%)
Length = 781
Score = 41.6 bits (96), Expect = 0.001
Identities = 44/165 (26%), Positives = 72/165 (42%), Gaps = 4/165 (2%)
Frame = +3
Query: 10 GEKTDTFFSTRGIRQGDPLSPYLFVICMDRLSHMIADQVEAKYWIPMRAGRYGPQISHLL 69
G ++D F T G+ QG LSPYLF + +D L+ I + V +L
Sbjct: 99 GGESDDFPITIGLHQGSTLSPYLFTLILDVLTEQIQEIVS----------------RCML 230
Query: 70 FADDLLLFAEASIEQAHCVLHCLDIFCQASGQKINRNKT----CVYFSKNVDTQLREDIL 125
FADD++L E S E+ + L + G +++R+K+ C + + + I
Sbjct: 231 FADDIVLLGE-SREKLNERLETWRRALETHGFRLSRSKSEYMECKFNKRRRVSNSEVKIG 407
Query: 126 HHTGFNQVNSLGMYLGANLAPGRSLRGKFNHIVNKIQSKLNGWKQ 170
H QV YLG+ + + G NH +IQ+ W++
Sbjct: 408 DHI-IPQVTRF-KYLGSVIQDDGEIEGDVNH---RIQA*WMKWRK 527
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.338 0.149 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,720,368
Number of Sequences: 63676
Number of extensions: 605962
Number of successful extensions: 4723
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 4595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4704
length of query: 755
length of database: 12,639,632
effective HSP length: 104
effective length of query: 651
effective length of database: 6,017,328
effective search space: 3917280528
effective search space used: 3917280528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146757.4