BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146757.2 + phase: 0
(1715 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 1111 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 1104 0.0
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 228 2e-59
TC232995 227 3e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 224 2e-58
TC213445 123 2e-48
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 169 1e-41
BM143109 167 4e-41
AI959950 166 6e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 159 8e-39
NP004897 gag-protease polyprotein 157 3e-38
CO983516 155 2e-37
AI855982 147 5e-35
AI966222 117 5e-32
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 132 2e-30
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 129 8e-30
CO982036 128 2e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 124 3e-28
BI321712 122 1e-27
BG508993 120 5e-27
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 1111 bits (2873), Expect = 0.0
Identities = 659/1700 (38%), Positives = 944/1700 (54%), Gaps = 26/1700 (1%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 49 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKKFL----------SKRGSYKNFKKEDQKG--CF 315
DE + + +L + L + ++QK + SK + K KG C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 909
Query: 316 NCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEA 375
C+ GH IA+CP K+ KG S S D +SE SD +
Sbjct: 910 GCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD---S 1023
Query: 376 DDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELT 435
D D A G+ T +ED ++ S+I EL S ++L E +
Sbjct: 1024 DRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQEA 1167
Query: 436 DLKEKYVDLMKQQKSTLLKLKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGNK 494
LK+ DL ++++ K ELKG +++ E+ KS+ + +KGS
Sbjct: 1168 QLKKVIADLEAEKEAH----KEEISELKGEVGFLNSKLENMTKSI-----KMLNKGSDT- 1317
Query: 495 HEIALDDFIMAGIDRSKVASMIYNTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
LD+ ++ G KN G +G+G++ + + ++ +
Sbjct: 1318 ----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTM------------T 1407
Query: 553 TFVP-EGTNAKTAVQSKPEASGSQAKITSKPENLKIKVMTKSVPKSQKITILKRSETVHQ 611
FVP + T Q + G Q K SK + + K
Sbjct: 1408 EFVPAKNRTGATMSQHRSRHHGMQQK-KSKRKKWRCHYCGK------------------Y 1530
Query: 612 NLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKLLSIHPKVCLRAREKQRSWY 671
IKP ++ S K + K K ++ L +H + A+E WY
Sbjct: 1531 GHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVS----LVVHTSLRASAKE---DWY 1689
Query: 672 LDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGL 730
LDSGCSRHMTG K L + V FG GKIIG G + + + S+N V LV GL
Sbjct: 1690 LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGL 1869
Query: 731 KHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCL 790
NL+SISQ CD G++V F+K+ C LV + + KG R ++ + CL
Sbjct: 1870 TANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCL 2046
Query: 791 LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS 850
S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK S +
Sbjct: 2047 SSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQK 2226
Query: 851 KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 910
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF
Sbjct: 2227 LQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKE 2406
Query: 911 FCIQIQSEKELNILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNRVVERKNRT 970
+++Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQN +VERKNRT
Sbjct: 2407 LSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRT 2586
Query: 971 LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1030
LQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P++ +FH F
Sbjct: 2587 LQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIF 2766
Query: 1031 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS 1090
G CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T+ V ES++V DD P
Sbjct: 2767 GSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPAR 2946
Query: 1091 KTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNSEAEPSSKVQNE 1150
K + + + DA++S + N+E S+ ++
Sbjct: 2947 KKDVEEDVRTSGDNVADAAKSGE------------------------NAENSDSATDESN 3054
Query: 1151 IASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKESPRRTRSHFRQEESLIGLLSIIEPKT 1210
I D + +T + + HP+ELIIG TRS + S +S IEPK
Sbjct: 3055 INQPDKRSST--------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKN 3210
Query: 1211 VEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKA 1270
V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P N+IGTKW+F+NK NE+G +TRNKA
Sbjct: 3211 VKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKA 3390
Query: 1271 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEV 1330
RLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG + EEV
Sbjct: 3391 RLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEV 3570
Query: 1331 YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRKT 1390
YV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF K
Sbjct: 3571 YVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQ 3750
Query: 1391 LKKDILIVQIYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVY 1450
++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +F+G+Q+ Q ++ ++
Sbjct: 3751 DAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIF 3930
Query: 1451 VHQTKYTKELLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1510
+ Q++Y K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTASR
Sbjct: 3931 LSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASR 4110
Query: 1511 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAG 1570
PDI ++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y + L+G+CDAD+AG
Sbjct: 4111 PDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAG 4290
Query: 1571 DRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQ 1630
+RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y
Sbjct: 4291 SADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYN 4470
Query: 1631 INANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWAD 1690
+ + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +DTE Q AD
Sbjct: 4471 VEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIAD 4650
Query: 1691 IFTKPLSVERFDFIKKNLNM 1710
IFTK L +F+ ++ L +
Sbjct: 4651 IFTKALDANQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 1104 bits (2856), Expect = 0.0
Identities = 658/1706 (38%), Positives = 946/1706 (54%), Gaps = 27/1706 (1%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKK------FLSKRGSYKNFKKEDQKG-------C 314
DE + + +L + L + R+QK F ++GS KK D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQ-KKSDEKPSHSKGIQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G + +ED ++ S+I EL S +EL E +
Sbjct: 1024 SDRDVNALTGRFES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLKLKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ ++ ELKG +++ E+ KS+ + +KGS
Sbjct: 1168 AQLKKVIANLEAEKEAHEEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 1317
Query: 494 KHEIALDDFIMAGIDRSKVASMIYNTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ + G KN G +G+G++ + + ++
Sbjct: 1318 ----MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRTTM------------ 1407
Query: 552 STFVP-EGTNAKTAVQSKPEASGSQAKITSKPENLKIKVMTKSVPKSQKITILKRSETVH 610
+ FVP + + T Q + G+Q K SK + + K
Sbjct: 1408 TEFVPAKNSTGATMSQHRSRHHGTQQK-KSKRKKWRCHYCGK------------------ 1530
Query: 611 QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKLLSIHPKVCLRAREKQRSW 670
IKP +++S G K + K++S+ LRA K+ W
Sbjct: 1531 YGHIKPFCYHLHGHPHHGTQSSSS------GRKMMWVPKHKIVSLVVHTSLRASAKE-DW 1689
Query: 671 YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDG 729
YLDSGCSRHMTG K + + V FG GKI G G + + + S+N V LV G
Sbjct: 1690 YLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKG 1869
Query: 730 LKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVC 789
L NL+SISQ CD G++V F+K+ C LV + + KG R ++ + C
Sbjct: 1870 LTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTC 2046
Query: 790 LLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFK 849
L S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK S +
Sbjct: 2047 LFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 2226
Query: 850 SKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS 909
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF
Sbjct: 2227 KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFK 2406
Query: 910 SFCIQIQSEKELNILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNRVVERKNR 969
+++Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQN +VERKNR
Sbjct: 2407 ELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNR 2586
Query: 970 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQ 1029
TLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P + +FH
Sbjct: 2587 TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHI 2766
Query: 1030 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPG 1089
FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T+ V ES++V DD P
Sbjct: 2767 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPA 2946
Query: 1090 SKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEITPEAESNSEAEPSSKVQN 1149
K + + + D +D+ K E +N
Sbjct: 2947 RKKDVEEDVR---------TSGDNVADTAKSAE-----------------------NAEN 3030
Query: 1150 EIASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKESPRRTRSHFRQEESLIGLLSIIEPK 1209
++ D + Q +P + + HP+ELIIG TRS + S +S IEPK
Sbjct: 3031 SDSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPK 3210
Query: 1210 TVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNK 1269
V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P N+IGTKW+F+NK NE+G +TRNK
Sbjct: 3211 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 3390
Query: 1270 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEE 1329
ARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG + EE
Sbjct: 3391 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 3570
Query: 1330 VYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRK 1389
YV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF K
Sbjct: 3571 AYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 3750
Query: 1390 TLKKDILIVQIYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGV 1449
++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +F+G+Q+ Q ++ +
Sbjct: 3751 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSI 3930
Query: 1450 YVHQTKYTKELLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1509
++ Q+KY K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTAS
Sbjct: 3931 FLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 4110
Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYA 1569
RPDI ++V +CAR+Q++P+ SHL VKRI +Y+ GT++ G++Y D L+G+CDAD+A
Sbjct: 4111 RPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWA 4290
Query: 1570 GDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDY 1629
G +RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y
Sbjct: 4291 GSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEY 4470
Query: 1630 QINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWA 1689
+ + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +DTE Q A
Sbjct: 4471 NVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIA 4650
Query: 1690 DIFTKPLSVERFDFIKKNLNMHFVSD 1715
DIFTK L +F+ ++ L + + D
Sbjct: 4651 DIFTKALDANQFEKLRGKLGICLLED 4728
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 228 bits (580), Expect = 2e-59
Identities = 109/153 (71%), Positives = 130/153 (84%)
Frame = -3
Query: 1222 LAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQE 1281
+AMQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G + RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1282 GIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDL 1341
GIDY ET+APVARLE IR+LL+Y LYQMDVKSAFLNG+I+EEVYV+QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1342 KHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1374
P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 227 bits (579), Expect = 3e-59
Identities = 107/173 (61%), Positives = 139/173 (79%)
Frame = +2
Query: 1332 VKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRKTL 1391
V+QPPGFE P+HVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1392 KKDILIVQIYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVYV 1451
DIL+VQIYVDDIIFGS+N SLCKEFS MQ EFEMSMMGELK+F+G+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1452 HQTKYTKELLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1504
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 224 bits (572), Expect = 2e-58
Identities = 121/246 (49%), Positives = 164/246 (66%), Gaps = 1/246 (0%)
Frame = +3
Query: 1337 GFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRKTLKKD-I 1395
GFED + P HV+ + L L +F + D + T + + LKK+
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPE-E*RTPHYSERLKKETF 488
Query: 1396 LIVQIYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVYVHQTK 1455
LI+ IYVDDIIFG+++ +CKEF +LM+D FE SM GELKF +G+QI Q G+++HQ K
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1456 YTKELLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1515
YTK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRPDI+F
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1516 SVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIER 1575
VCLCARFQS P+ SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++ER
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVER 1028
Query: 1576 KSTSGN 1581
KSTS N
Sbjct: 1029 KSTSRN 1046
>TC213445
Length = 705
Score = 123 bits (308), Expect(2) = 2e-48
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = +1
Query: 1572 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1631
+ +R+STS C F+G L+SW SK+Q ++ +STAEAEYISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1632 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1669
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 90.1 bits (222), Expect(2) = 2e-48
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +2
Query: 1499 MIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1558
MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1559 KLIGFCDA 1566
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 169 bits (428), Expect = 1e-41
Identities = 92/222 (41%), Positives = 136/222 (60%), Gaps = 4/222 (1%)
Frame = +1
Query: 1491 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1550
VD +R +IGSL YL SRP+I F+V L +RF PR SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1551 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1607
L+ KS L+G+ D+D+ D + KST G + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1608 EYISAASCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1666
EY++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1667 FIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1708
+IRD V KG + +++ E Q AD+ TKP+ V RF I L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BM143109
Length = 415
Score = 167 bits (423), Expect = 4e-41
Identities = 81/137 (59%), Positives = 107/137 (77%)
Frame = +1
Query: 1334 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRKTLKK 1393
QPP ++ + P+HV+KLKK LYGLKQA RAWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1394 DILIVQIYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVYVHQ 1453
DIL+VQIYVDDIIFGS+N SLCK+FS+ MQ+EFEMSMM EL FF+G+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1454 TKYTKELLKKFKLEDCK 1470
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>AI959950
Length = 466
Score = 166 bits (421), Expect = 6e-41
Identities = 84/130 (64%), Positives = 104/130 (79%)
Frame = -1
Query: 1223 AMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1282
AMQEEL+QFQ+N+V LV P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1283 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLK 1342
IDY +TFA VARLE I +LLS+A + LYQMDVKSAFLNG+I++EVYV+QPPGFE+
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1343 HPDHVYKLKK 1352
HV+KL K
Sbjct: 31 LHQHVFKLNK 2
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 159 bits (403), Expect = 8e-39
Identities = 76/111 (68%), Positives = 91/111 (81%)
Frame = +3
Query: 1207 EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVT 1266
EPK ++EA+ DD WI+ MQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G +
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1267 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1317
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+LL+YA LYQMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>NP004897 gag-protease polyprotein
Length = 1923
Score = 157 bits (398), Expect = 3e-38
Identities = 177/704 (25%), Positives = 292/704 (41%), Gaps = 26/704 (3%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVSSDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNFKKEDQK-------GC 314
DE + + +L + L + R+QK F ++GS + K+ D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G +ED ++ S+I EL S +EL E +
Sbjct: 1024SDRDVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLKLKASEEELKG-FNLISATYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ + ELKG +++ E+ KS+ + +KGS
Sbjct: 1168AQLKKVIANLEAEKEAH----EEEISELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 1317
Query: 494 KHEIALDDFIMAGIDRSKVASMIYNTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ + G KN G +G+G++ + + ++
Sbjct: 1318----MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRITM------------ 1407
Query: 552 STFVP-EGTNAKTAVQSKPEASGSQAKITSKPENLKIKVMTKSVPKSQKITILKRSETVH 610
+ FVP + + T Q + G+Q K SK + + K
Sbjct: 1408TEFVPAKISTGATMSQHRSRHHGTQQK-KSKRKKWRCHYCGK------------------ 1530
Query: 611 QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKLLSIHPKVCLRAREKQRSW 670
IKP +++S + + K K+++ L +H + A+E W
Sbjct: 1531YGHIKPFCYHLHGHPHHGTQSSSSRRKMMWVPKHKIVS----LVVHTSLRASAKE---DW 1689
Query: 671 YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI 714
YLDSGCSRHMTG K + + V FG GKI G G +
Sbjct: 1690YLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKL 1821
>CO983516
Length = 724
Score = 155 bits (391), Expect = 2e-37
Identities = 76/120 (63%), Positives = 92/120 (76%)
Frame = +2
Query: 1289 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1348
F PVARLE+IRLLL A LYQMDVKSAFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1349 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRKTLKKDILIVQIYVDDIIFG 1408
+LKK+LYGLKQAPRAWY+RL+ L + + +G +D TLF K ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 147 bits (370), Expect = 5e-35
Identities = 78/161 (48%), Positives = 104/161 (64%)
Frame = +2
Query: 1175 PEELIIGSKESPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRN 1234
P + IIG TR + + + +S+IEPK ++EA+ DD WI+AMQEELNQF+RN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1235 DVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1294
+VW LV KP +I TKWVFRNKL+E + +KARLVA+GY+Q +G+DY T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1295 LEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQP 1335
L I + LSY LY SA L+G++ EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>AI966222
Length = 430
Score = 117 bits (294), Expect(2) = 5e-32
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +1
Query: 973 EMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGC 1032
EMART +++N KHF AE +N CY+QN+IYIRP+L++T YEL+KGR+PNISYF+ F C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 1033 TCYILNTKDYLKKFDAKAQRGIFLGYSE 1060
C+I+NTKD L K D+K+ GIF+ YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 40.4 bits (93), Expect(2) = 5e-32
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 1062 SKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNA 1100
SKA+RVYNS T +EE++H++F +P + E ES A
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 132 bits (331), Expect = 2e-30
Identities = 66/131 (50%), Positives = 92/131 (69%)
Frame = -2
Query: 1240 VPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1299
VP P K +G +WV+ K+ GEV R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1300 LLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQ 1359
L L+ A L+Q+D+K+AFL+G +EE++Y++QPPGF V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1360 APRAWYDRLSN 1370
+PRAW+ + S+
Sbjct: 46 SPRAWFGKFSH 14
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 129 bits (325), Expect = 8e-30
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Frame = +2
Query: 1559 KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQ 1618
+L G+CDAD+AG ++R+STSG C F+G NL+SW SK+Q +A S+AEAEY S A +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1619 LLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1677
L+W+K L++ + + +YCDN AA+ ++ NP+ H R KHIEI HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1678 DIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMH 1711
+FI + Q DI TK L + + L +
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475
>CO982036
Length = 674
Score = 128 bits (321), Expect = 2e-29
Identities = 74/207 (35%), Positives = 121/207 (57%), Gaps = 4/207 (1%)
Frame = -2
Query: 1400 IYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVYVHQTKYTKE 1459
+YVD II GSS +L + + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1460 LLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1519
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP+I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1520 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1576
+F S+P +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1577 STSGNCQFLGENLIS-WASKRQATIAM 1602
STSG FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 124 bits (312), Expect = 3e-28
Identities = 60/134 (44%), Positives = 88/134 (64%)
Frame = +3
Query: 1202 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNE 1261
L S+ P T+ EAL GW AM +E+ + N W+LVP P K +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1262 QGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1321
G+V R KARLVA+GY+Q GI+Y +TF+PV L +RL L+ A L+Q+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1322 LNGVIEEEVYVKQP 1335
L+G +EE++Y++QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI321712
Length = 399
Score = 122 bits (306), Expect = 1e-27
Identities = 57/124 (45%), Positives = 86/124 (68%)
Frame = -3
Query: 1400 IYVDDIIFGSSNASLCKEFSKLMQDEFEMSMMGELKFFMGIQINQSKEGVYVHQTKYTKE 1459
+YVDD+IF +N S+ +EF K M +EFEM+ MG + +++GI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1460 LLKKFKLEDCKMMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1519
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1520 CARF 1523
+R+
Sbjct: 19 VSRY 8
>BG508993
Length = 374
Score = 120 bits (301), Expect = 5e-27
Identities = 55/123 (44%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1543 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1602
KGT + GL Y S +YKL+GFCD+D+AGD +RKST+G F+G+ + +W+SK+Q + +
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1603 STAEAEYISAASCCTQLLWMKHQLEDYQ-INANSIPIYCDNTAAICLSKNPILHSRAKHI 1661
T EAEY++A SC +W++ LE+ Q + S IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1662 EIK 1664
+ +
Sbjct: 364 DTR 372
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,634,704
Number of Sequences: 63676
Number of extensions: 935210
Number of successful extensions: 4287
Number of sequences better than 10.0: 197
Number of HSP's better than 10.0 without gapping: 4118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4234
length of query: 1715
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1605
effective length of database: 5,635,272
effective search space: 9044611560
effective search space used: 9044611560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146757.2