BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146757.11 - phase: 0 /pseudo
(348 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA820470 204 4e-53
TC219094 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate... 182 1e-46
TC219095 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate... 149 2e-36
TC211240 weakly similar to PIR|T00565|T00565 geranylgeranyl-diph... 111 4e-25
TC216245 similar to UP|Q949X7 (Q949X7) Diaminopimelate decarboxy... 28 4.7
TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, parti... 28 8.0
TC209744 weakly similar to UP|Q9LQV8 (Q9LQV8) F10B6.13, partial ... 28 8.0
>CA820470
Length = 429
Score = 204 bits (520), Expect = 4e-53
Identities = 98/138 (71%), Positives = 114/138 (82%)
Frame = +2
Query: 1 MSSSEEASSMETTTIDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLH 60
M +S E ++KD+HVTF ++MY+LLP+PYESQEINHLTLAYFVIS LDIL+SLH
Sbjct: 14 MMNSTEEEYRGCEIMEKDVHVTFLELMYYLLPSPYESQEINHLTLAYFVISGLDILDSLH 193
Query: 61 LVEKEAVANWVLSFQVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYC 120
V K+AV +WVLSFQ G D N+GQFYGFHGSKTSQFPPDENGV HNNSHLASTYC
Sbjct: 194 KVAKDAVVSWVLSFQAHPGAKTDLNDGQFYGFHGSKTSQFPPDENGVLIHNNSHLASTYC 373
Query: 121 ALAILKIVGYDLSSLDSE 138
A++ILKIVGY+LS+LDSE
Sbjct: 374 AISILKIVGYELSNLDSE 427
>TC219094 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate
geranylgeranyltransferase I beta chain homolog At2g39550
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(36%)
Length = 456
Score = 182 bits (463), Expect = 1e-46
Identities = 97/135 (71%), Positives = 106/135 (77%)
Frame = +2
Query: 209 VQLIALLHLSG*WDTLKTMFSQVVICLL**ICRCCWTGSCRDKGLMVDFKVDLINLLIHV 268
VQLI L HLS *WD+LK +FSQVV+ LL**+ CCWTGSCR + LM FKVD INL IHV
Sbjct: 47 VQLIVLWHLSD*WDSLKIIFSQVVLHLL**MRHCCWTGSCRGRELMGVFKVDQINLAIHV 226
Query: 269 MHFGLEAF*EFSGAAILLTIKLYVDFCFPVNTSMVVSANSLETFQIYTIPTMDLQLSACW 328
MHFGLE F* F GA+ LLTI+LYVDFCF VN SMVVSANSL + Q YT PTMD LSACW
Sbjct: 227 MHFGLEPF*GFWGASNLLTIRLYVDFCFLVNISMVVSANSLGSIQTYTTPTMDSLLSACW 406
Query: 329 KNLA*SHFVLNLELL 343
KNLA*+HF N E L
Sbjct: 407 KNLA*NHFFRNWESL 451
>TC219095 similar to PIR|T00565|T00565 geranylgeranyl-diphosphate
geranylgeranyltransferase I beta chain homolog At2g39550
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(28%)
Length = 574
Score = 149 bits (375), Expect = 2e-36
Identities = 77/107 (71%), Positives = 85/107 (78%)
Frame = +1
Query: 235 LL**ICRCCWTGSCRDKGLMVDFKVDLINLLIHVMHFGLEAF*EFSGAAILLTIKLYVDF 294
LL**+ CCWTGSCR + LM FKVD IN +IHVMHFGLE F* F GAA LLT++LYVDF
Sbjct: 1 LL**MHHCCWTGSCRGRELMGVFKVDQINPVIHVMHFGLEPF*GF*GAANLLTVRLYVDF 180
Query: 295 CFPVNTSMVVSANSLETFQIYTIPTMDLQLSACWKNLA*SHFVLNLE 341
CF VN SMVVS NSLE+ Q T PTM+L LSACWKNL *+HFVLN E
Sbjct: 181 CFLVNISMVVSENSLESIQTCTTPTMELPLSACWKNLL*NHFVLNWE 321
>TC211240 weakly similar to PIR|T00565|T00565 geranylgeranyl-diphosphate
geranylgeranyltransferase I beta chain homolog At2g39550
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(29%)
Length = 562
Score = 111 bits (278), Expect = 4e-25
Identities = 52/68 (76%), Positives = 61/68 (89%)
Frame = +2
Query: 110 HNNSHLASTYCALAILKIVGYDLSSLDSESMSSSMKNLQQPDGSFMPIHIGGETDLRFVY 169
HNNSHLASTYCA++ILKIVGY+LS+LDSE++ +SM+NLQQPDGSF+ IH GGETDLRFVY
Sbjct: 314 HNNSHLASTYCAISILKIVGYELSNLDSETIVTSMRNLQQPDGSFISIHTGGETDLRFVY 493
Query: 170 CAGWITGM 177
CA I M
Sbjct: 494 CAATICFM 517
Score = 103 bits (258), Expect = 9e-23
Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
Frame = +3
Query: 15 IDKDLHVTFAQMMYHLLPNPYESQEINHLTLAYFVISSLDILNSLHLVEKEAVA-NWVLS 73
++KD HV F ++MY++LP+PYESQEINHLTLAYF +SLD+ L +E +WVLS
Sbjct: 36 MEKDAHVRFLELMYYMLPSPYESQEINHLTLAYF--ASLDLTF*LTPQSREGCCISWVLS 209
Query: 74 FQVQRGTTNDPNNGQFYGFHGSKTSQFPPDENGVFHHNNSHLASTYCALAILKIVGYDLS 133
FQ G D N+GQFYGF + QFPPDENGV K++ +
Sbjct: 210 FQAHPGAKADLNDGQFYGFM-VQNLQFPPDENGV*FTTTVTWQVLIAPFPY*KLLVMNCP 386
Query: 134 SLDSES---MSSSMKNLQQPDGSFM--PIHIGGETDLRFVYCAGWITGMEWTRKKSRI 186
L + + + NL + F+ I G ++ + WITG+ WTR+K RI
Sbjct: 387 ILILKQL*LL*GTFNNLMEVSFLFILEAKQILGLCIVQLPSVSCWITGVAWTRRKPRI 560
>TC216245 similar to UP|Q949X7 (Q949X7) Diaminopimelate decarboxylase,
partial (31%)
Length = 723
Score = 28.5 bits (62), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 15 IDKDLHVTFAQMMYHLLPNPYESQEIN 41
+ K LHV F +++HL PN E+ ++
Sbjct: 422 LQKSLHVLFCSLIHHLQPNTQEAASLD 342
>TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, partial (43%)
Length = 1750
Score = 27.7 bits (60), Expect = 8.0
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = -3
Query: 110 HNNSHLASTYCALAILKI--VGYDLSSLDSE--SMSSSMKNLQQPDGSFMP-----IHIG 160
H+N++L S +C+L + KI + +DL L E S +++L+ SF+P I G
Sbjct: 509 HSNTNLLSCFCSLCMPKINELHFDLRILHCEPCSFFDFLQSLRSVLSSFVPGGVSFISFG 330
Query: 161 GETDLRFVYCAGWITGMEWTRKKSRI 186
+ + W+ E+ +K R+
Sbjct: 329 NSQSSQLLPIIRWVG--EFEQKAGRV 258
>TC209744 weakly similar to UP|Q9LQV8 (Q9LQV8) F10B6.13, partial (41%)
Length = 1104
Score = 27.7 bits (60), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +2
Query: 24 AQMMYHLLPNPYESQEINHLTLAYFVI 50
A + Y +P P+E+++I HLTL + I
Sbjct: 263 AILSYQTVPGPHETKKIIHLTLHFIAI 343
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.335 0.144 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,863,232
Number of Sequences: 63676
Number of extensions: 239987
Number of successful extensions: 2225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of query: 348
length of database: 12,639,632
effective HSP length: 98
effective length of query: 250
effective length of database: 6,399,384
effective search space: 1599846000
effective search space used: 1599846000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146757.11