TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146756.8 - phase: 0 /pseudo
         (469 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...   174  6e-44
CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...    86  4e-17
TC213121                                                               80  1e-15
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    35  0.072
TC207363 homologue to UP|Q9FMJ0 (Q9FMJ0) Phosphatidylinositol 4-...    31  1.0
TC234874                                                               31  1.4
TC213153                                                               29  5.2
TC210266 similar to UP|Q8LDN5 (Q8LDN5) Topoisomerase-like protei...    28  6.7

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score =  174 bits (442), Expect = 6e-44
 Identities = 87/141 (61%), Positives = 106/141 (74%)
 Frame = +2

Query: 307 SDSIDRSKEDGNDAFEQVTPEFLNCLKTYGLPNHSIILKVGTPIMLLRNLDQAEGLCNGT 366
           SDSI++S    ++ F  +T EF+N L T  LPNH I LKV + IMLLRNLDQ EGLCN T
Sbjct: 2   SDSIEKSDTIESEGFSTITTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNST 181

Query: 367 RLTITRLANHVIEVKIITEKNIGNQVYIPGISMSPSKLPWPFKLVRRQFSIVVSFAITIN 426
           RL IT  A+H+IE KI++ K  GN VYIP ++ SPS+ PWPFKL+RR+F I+VS+A+TIN
Sbjct: 182 RLIITMFADHIIEAKIMSGKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTIN 361

Query: 427 KSQGQSLDHVGLYLPKDVFSH 447
           KSQGQ L  VGLYLP  VFSH
Sbjct: 362 KSQGQLLASVGLYLPTPVFSH 424


>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
           cultivar-group)}, partial (5%)
          Length = 617

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 42/91 (46%), Positives = 59/91 (64%)
 Frame = +2

Query: 41  GIGKTYMWNILAASLRSRKDIVFNVATSGIVALLLPGGRTVHSRFKIPVPTLQSSICDIE 100
           G  KT++W  L+A +RS K ++ +     + +LLLP G T HS F IP+     S C+I 
Sbjct: 11  GTSKTFLWKTLSAGMRS-KGLMSSSCLKRLASLLLPRG*TAHSTFSIPLVIKDDSTCNIN 187

Query: 101 KGTELAELLKQTKLIIWDEAPMAHKFCFEAL 131
           +G+  ++LL  TKLIIWDE P+ +KFCFEAL
Sbjct: 188 QGSARSKLLLHTKLIIWDETPVMNKFCFEAL 280


>TC213121 
          Length = 713

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 32/67 (47%), Positives = 51/67 (75%)
 Frame = +2

Query: 11  MLDEQKNIYNRIMEVVTNEKGGVFFLYGYGGIGKTYMWNILAASLRSRKDIVFNVATSGI 70
           + DE  +I+N+IM ++  + GGV+FLYGYGG GKT++W  L++++ S   IV  +A+SGI
Sbjct: 410 LTDEHASIFNKIMHMIATQSGGVYFLYGYGGTGKTFVWKTLSSTIHSNSGIVLTMASSGI 589

Query: 71  VALLLPG 77
           +++LLPG
Sbjct: 590 LSMLLPG 610


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
           recombination protein PIF1, mitochondrial precursor,
           partial (8%)
          Length = 596

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 20/46 (43%), Positives = 31/46 (66%)
 Frame = +2

Query: 420 SFAITINKSQGQSLDHVGLYLPKDVFSHEQLYVALSRVKSNEGLKI 465
           ++A++I+K QG +L+ V   L +  F    +YVALSRV+S EGL +
Sbjct: 2   AWAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHL 136


>TC207363 homologue to UP|Q9FMJ0 (Q9FMJ0) Phosphatidylinositol 4-kinase
           (At5g64070/MHJ24_5), partial (29%)
          Length = 1606

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 79  RTVHSRFKIPVPTLQ----SSICDIEKGTELAELLKQTKLIIWDEAPMAHKFC 127
           R +++  K+ +PT Q    SS+  I+K   +  L ++T L +W + P    FC
Sbjct: 351 RLLYTLSKVDIPTSQVYVNSSMLSIKKILPVLNLPRETXLKVWQDIPWCPTFC 509


>TC234874 
          Length = 807

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
 Frame = +2

Query: 344 LKVGTPIMLLRNLDQAEGLCNGTRLTITRLANHVIEVKIITEKNIGNQVYIPGISMSPSK 403
           LK  + + + R LD A+      +++I +++ +VI  K I E        +P   +  ++
Sbjct: 170 LKFNSKVEVFRYLDNAQN-----KVSIQKISPNVIVEKAIAEG-------LPPGWVKKTR 313

Query: 404 LPWPFKLVRRQFSIVVSFAITINKSQGQSLDHVGL----YLPKDVFSHEQLYVALSRVKS 459
           +      VRR  S  V+   T++ S GQS D   +     +P+   S E + V +S   S
Sbjct: 314 ITTNGDSVRRDTSTSVTVKPTLSISMGQSSDMDMIANDQQIPRSASSEEYMSVPISECIS 493

Query: 460 NE 461
           N+
Sbjct: 494 NQ 499


>TC213153 
          Length = 479

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 399 MSPSKLPWPFKLVRRQFSIVV 419
           +SPS +PWPF+++  Q +++V
Sbjct: 294 ISPSFIPWPFEILSLQLAVIV 356


>TC210266 similar to UP|Q8LDN5 (Q8LDN5) Topoisomerase-like protein, partial
           (30%)
          Length = 860

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/49 (26%), Positives = 27/49 (54%)
 Frame = +3

Query: 223 GDGKLGEENDGYNDIEISNELLISNFTDPIEAIVQSTYSNLLENFQDGD 271
           G+ ++ + +  Y+  E   +L+ S  TDP++   ++  S + E F +GD
Sbjct: 438 GESRIDKNDPNYDSGEEPYQLVGSTVTDPLDDFKKAVVSIIEEYFSNGD 584


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.328    0.144    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,064,896
Number of Sequences: 63676
Number of extensions: 227445
Number of successful extensions: 1267
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of query: 469
length of database: 12,639,632
effective HSP length: 101
effective length of query: 368
effective length of database: 6,208,356
effective search space: 2284675008
effective search space used: 2284675008
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)