BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146756.3 - phase: 0
(138 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC206026 UP|PSA6_SOYBN (O48551) Proteasome subunit alpha type 6 ... 265 5e-72
TC216539 homologue to UP|PSA6_SOYBN (O48551) Proteasome subunit ... 258 8e-70
TC225506 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit ... 97 3e-21
TC225502 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit ... 96 5e-21
TC225504 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit ... 95 1e-20
TC225505 similar to UP|PSA2_ARATH (O23708) Proteasome subunit al... 80 4e-16
AW309413 weakly similar to SP|O48551|PSA6_ Proteasome subunit al... 78 2e-15
TC204281 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 su... 75 8e-15
TC204277 similar to UP|Q8LF69 (Q8LF69) 20S proteasome subunit PA... 75 8e-15
TC224606 homologue to UP|PSA4_SPIOL (P52427) Proteasome subunit ... 72 1e-13
TC224800 homologue to UP|PSA4_SPIOL (P52427) Proteasome subunit ... 71 2e-13
AW396398 similar to SP|O23708|PSA2 Proteasome subunit alpha type... 71 2e-13
TC205193 homologue to UP|PSA7_CICAR (Q9SXU1) Proteasome subunit ... 67 2e-12
BE801677 similar to SP|O23708|PSA2_ Proteasome subunit alpha typ... 62 9e-11
TC218552 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 ... 52 7e-08
TC227911 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 ... 50 3e-07
TC218551 homologue to UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit ... 50 3e-07
AW277971 similar to GP|22947842|gb 20S proteasome alpha 6 subuni... 50 3e-07
TC205194 homologue to UP|PSA7_CICAR (Q9SXU1) Proteasome subunit ... 46 6e-06
TC215340 homologue to UP|PSA3_SPIOL (O24362) Proteasome subunit ... 41 2e-04
>TC206026 UP|PSA6_SOYBN (O48551) Proteasome subunit alpha type 6 (20S
proteasome alpha subunit A) (20S proteasome subunit
alpha-1) (Proteasome iota subunit) , complete
Length = 1119
Score = 265 bits (677), Expect = 5e-72
Identities = 130/138 (94%), Positives = 135/138 (97%)
Frame = +2
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDE GPQLYKCDPAGHYFGHKATSA
Sbjct: 500 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSA 679
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G KDQEAINFLEKKMKNDPSFTY+ETVQTAI+ALQSVLQEDFKATEIEVGVV+KD PEFR
Sbjct: 680 GLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFR 859
Query: 121 VLSTEEIDEHLTAISERD 138
VL+T+EIDEHLTAISERD
Sbjct: 860 VLTTDEIDEHLTAISERD 913
>TC216539 homologue to UP|PSA6_SOYBN (O48551) Proteasome subunit alpha type 6
(20S proteasome alpha subunit A) (20S proteasome
subunit alpha-1) (Proteasome iota subunit) , complete
Length = 1073
Score = 258 bits (658), Expect = 8e-70
Identities = 126/138 (91%), Positives = 132/138 (95%)
Frame = +3
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDE GPQLYKCDPAGHYFGHKATSA
Sbjct: 486 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSA 665
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G KDQEAINFLEKKMKNDPSFTY+ VQTAI+ALQSV+QEDFK TEIEVGVV+K+ PEFR
Sbjct: 666 GLKDQEAINFLEKKMKNDPSFTYEXXVQTAISALQSVVQEDFKTTEIEVGVVRKENPEFR 845
Query: 121 VLSTEEIDEHLTAISERD 138
VL+TEEIDEHLTAISERD
Sbjct: 846 VLTTEEIDEHLTAISERD 899
>TC225506 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , partial (68%)
Length = 920
Score = 96.7 bits (239), Expect = 3e-21
Identities = 54/134 (40%), Positives = 78/134 (57%)
Frame = +3
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV+ L + +A Q +TQ +RP GV +V G DD NGPQLY+ DP+G YF KA++
Sbjct: 90 IPVNQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDD-NGPQLYQVDPSGSYFSWKASAM 266
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G A FLEK+ +D D++V TAI L+ + IE+G++ DK FR
Sbjct: 267 GKNVSNAKTFLEKRYTDD--MELDDSVHTAILTLKEGFEGQISGKNIEIGIIGADK-NFR 437
Query: 121 VLSTEEIDEHLTAI 134
VL+ EID++L +
Sbjct: 438 VLTPAEIDDYLAEV 479
>TC225502 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , complete
Length = 1114
Score = 95.9 bits (237), Expect = 5e-21
Identities = 54/134 (40%), Positives = 77/134 (57%)
Frame = +1
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV L + +A Q +TQ +RP GV +V G DD NGPQLY+ DP+G YF KA++
Sbjct: 400 IPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDD-NGPQLYQVDPSGSYFSWKASAM 576
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G A FLEK+ +D D+ V TAI L+ + IE+G++ DK +FR
Sbjct: 577 GKNVSNAKTFLEKRYTDD--MELDDAVHTAILTLKEGFEGQISGKNIEIGIIGADK-KFR 747
Query: 121 VLSTEEIDEHLTAI 134
VL+ EID++L +
Sbjct: 748 VLTPAEIDDYLAEV 789
>TC225504 homologue to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , complete
Length = 1151
Score = 94.7 bits (234), Expect = 1e-20
Identities = 53/134 (39%), Positives = 77/134 (56%)
Frame = +2
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV L + +A Q +TQ +RP GV +V G DD NGPQLY+ DP+G YF KA++
Sbjct: 452 IPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDD-NGPQLYQVDPSGSYFSWKASAM 628
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G A FLEK+ +D D+ V T+I L+ + IE+G++ DK +FR
Sbjct: 629 GKNVSNAKTFLEKRYTDD--MELDDAVHTSILTLKEGFEGQISGKNIEIGIIGADK-KFR 799
Query: 121 VLSTEEIDEHLTAI 134
VL+ EID++L +
Sbjct: 800 VLTPAEIDDYLAEV 841
>TC225505 similar to UP|PSA2_ARATH (O23708) Proteasome subunit alpha type 2
(20S proteasome alpha subunit B) , partial (46%)
Length = 632
Score = 79.7 bits (195), Expect = 4e-16
Identities = 44/108 (40%), Positives = 63/108 (57%)
Frame = +2
Query: 27 GVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEKKMKNDPSFTYDET 86
GV +V G DD NGPQLY+ DP+G YF KA++ G A FLEK+ +D D+
Sbjct: 14 GVSLLVAGFDD-NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDD--MELDDA 184
Query: 87 VQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFRVLSTEEIDEHLTAI 134
V TA+ L+ + IE+G++ DK +FRVL+ EID++L +
Sbjct: 185 VHTAMLTLKEGFEGQISGKNIEIGIIGADK-KFRVLTPAEIDDYLAEV 325
>AW309413 weakly similar to SP|O48551|PSA6_ Proteasome subunit alpha type 6
(EC 3.4.25.1) (20S proteasome alpha subunit A), partial
(28%)
Length = 220
Score = 77.8 bits (190), Expect = 2e-15
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = -1
Query: 14 SQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEK 73
S V+ Q+ YMR LG V + GIDDE PQLYKCDPAGH K SAGSK ++FL+K
Sbjct: 220 SHVHPQYVYMRLLGAVPRL*GIDDEQPPQLYKCDPAGHPPRCKVISAGSKQ*TVLHFLQK 41
Query: 74 KMKNDPSFTYDE 85
K+K D FTY +
Sbjct: 40 KIKPDL*FTYQQ 5
>TC204281 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 subunit,
partial (91%)
Length = 1275
Score = 75.5 bits (184), Expect = 8e-15
Identities = 44/130 (33%), Positives = 77/130 (58%), Gaps = 1/130 (0%)
Frame = +3
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV L +ADK+QV TQ ++ RP GV +V G+D E+G LY P+G+YF ++A +
Sbjct: 507 LPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-ESGAHLYYNCPSGNYFEYQAFAI 683
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQ-EDFKATEIEVGVVQKDKPEF 119
GS+ Q A +LE++ +N + ++ ++ A+ A + LQ E +++ + VV +P F
Sbjct: 684 GSRSQAAKTYLERRFENFVGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEP-F 860
Query: 120 RVLSTEEIDE 129
+L E + +
Sbjct: 861 HILDPETVQQ 890
>TC204277 similar to UP|Q8LF69 (Q8LF69) 20S proteasome subunit PAF1, partial
(92%)
Length = 1153
Score = 75.5 bits (184), Expect = 8e-15
Identities = 44/130 (33%), Positives = 77/130 (58%), Gaps = 1/130 (0%)
Frame = +3
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV L +ADK+QV TQ ++ RP GV +V G+D E+G LY P+G+YF ++A +
Sbjct: 381 LPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-ESGAHLYYNCPSGNYFEYQAFAI 557
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQ-EDFKATEIEVGVVQKDKPEF 119
GS+ Q A +LE++ +N + ++ ++ A+ A + LQ E +++ + VV +P F
Sbjct: 558 GSRSQAAKTYLERRFENFVGSSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEP-F 734
Query: 120 RVLSTEEIDE 129
+L E + +
Sbjct: 735 HILDQETVQQ 764
>TC224606 homologue to UP|PSA4_SPIOL (P52427) Proteasome subunit alpha type 4
(20S proteasome alpha subunit C) (20S proteasome
subunit alpha-3) (Proteasome 27 kDa subunit) , partial
(98%)
Length = 1002
Score = 71.6 bits (174), Expect = 1e-13
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Frame = +2
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
MPV+ L + + D Q YTQ +RP GV + G D G QLY DP+G+Y G KA +
Sbjct: 392 MPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYTSDPSGNYGGWKAAAI 571
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATE----IEVGVVQKDK 116
G+ +Q A + L++ K+D T +E VQ A+ L + +E EV + K
Sbjct: 572 GANNQAAQSILKQDYKDD--ITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLSPAGK 745
Query: 117 PEFRVLSTEEIDEHL 131
+++V S E + + L
Sbjct: 746 VKYQVCSPENLTKLL 790
>TC224800 homologue to UP|PSA4_SPIOL (P52427) Proteasome subunit alpha type 4
(20S proteasome alpha subunit C) (20S proteasome
subunit alpha-3) (Proteasome 27 kDa subunit) , partial
(98%)
Length = 1303
Score = 70.9 bits (172), Expect = 2e-13
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Frame = +2
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
MPV+ L + + D Q YTQ +RP GV + G D G QLY DP+G+Y G KA +
Sbjct: 464 MPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAI 643
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATE----IEVGVVQKDK 116
G+ +Q A + L++ K+D T +E VQ A+ L + +E EV + K
Sbjct: 644 GANNQAAQSILKQDYKDD--ITREEAVQLALKVLSKTMDSTSLTSEKLELAEVFLSPSGK 817
Query: 117 PEFRVLSTEEIDEHL 131
++ V S E + + L
Sbjct: 818 VKYEVCSPEALTKML 862
>AW396398 similar to SP|O23708|PSA2 Proteasome subunit alpha type 2 (EC
3.4.25.1) (20S proteasome alpha subunit B). [Mouse-ear
cress], partial (67%)
Length = 475
Score = 70.9 bits (172), Expect = 2e-13
Identities = 42/134 (31%), Positives = 71/134 (52%)
Frame = +2
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV L + +A + Q T+ +RP V +V G DD NGPQLY+ DP+G Y KAT+
Sbjct: 83 IPVTQLVREVAAEMQESTESGGVRPFVVTLVVAGFDD-NGPQLYQVDPSG*YRSWKATAV 259
Query: 61 GSKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFR 120
G A LEK+ +D D+ T++ L+ + ++E+G++ D+ + R
Sbjct: 260 GKNVANAKTLLEKRCSDD--MELDDARHTSVLTLREGFEGHISGNDMEIGII*ADE-KVR 430
Query: 121 VLSTEEIDEHLTAI 134
V E+D+++ +
Sbjct: 431 V*REAEVDDYVAEV 472
>TC205193 homologue to UP|PSA7_CICAR (Q9SXU1) Proteasome subunit alpha type 7
(20S proteasome alpha subunit D) (20S proteasome
subunit alpha-4) , complete
Length = 1287
Score = 67.4 bits (163), Expect = 2e-12
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +2
Query: 3 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDD-ENGPQLYKCDPAGHYFGHKATSAG 61
V+ + ++IA Q YTQ +RP G+ +++G D + P LY+ DP+G + KA + G
Sbjct: 470 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTHSPSLYQTDPSGTFSAWKANATG 649
Query: 62 SKDQEAINFLEKKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFRV 121
FLEK K+ ETV+ AI AL V++ K IEV V+ K++ R
Sbjct: 650 RNSNSIREFLEKNYKDTSG---QETVKLAIRALLEVVESGGK--NIEVAVMTKEQ-GLRQ 811
Query: 122 LSTEEID 128
L EID
Sbjct: 812 LEEAEID 832
>BE801677 similar to SP|O23708|PSA2_ Proteasome subunit alpha type 2 (EC
3.4.25.1) (20S proteasome alpha subunit B). [Mouse-ear
cress], partial (41%)
Length = 295
Score = 62.0 bits (149), Expect = 9e-11
Identities = 36/101 (35%), Positives = 56/101 (54%)
Frame = -1
Query: 34 GIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEKKMKNDPSFTYDETVQTAIAA 93
G+DD NGPQ Y+ +P+G YF +A + + A FLEK+ N D+ V TA+
Sbjct: 292 GVDD-NGPQ*YQVNPSGSYFPCQAPAMANHVSNAQTFLEKRYTN--HMELDDAVHTAMLT 122
Query: 94 LQSVLQEDFKATEIEVGVVQKDKPEFRVLSTEEIDEHLTAI 134
L+ + I +G++ DK +FRVL+ EID++L +
Sbjct: 121 LKEGFEGQISGQNIVIGIIGADK-KFRVLTPAEIDDYLAEV 2
>TC218552 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 (20S
proteasome alpha subunit E) (20S proteasome subunit
alpha-5) , complete
Length = 1031
Score = 52.4 bits (124), Expect = 7e-08
Identities = 30/110 (27%), Positives = 58/110 (52%)
Frame = +3
Query: 19 QHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEKKMKND 78
+ + RP GV ++ G DENGP LY DP+G ++ A + GS + A + L+++ D
Sbjct: 504 EESMSRPFGVSLLIAG-HDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKD 680
Query: 79 PSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFRVLSTEEID 128
+ ET+ A++ L+ V++E +++ K P + + + E++
Sbjct: 681 LTLQEAETI--ALSILKQVMEEKVTPNNVDIA---KVAPTYHLYTPSEVE 815
>TC227911 UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5 (20S
proteasome alpha subunit E) (20S proteasome subunit
alpha-5) , complete
Length = 1043
Score = 50.4 bits (119), Expect = 3e-07
Identities = 29/110 (26%), Positives = 57/110 (51%)
Frame = +1
Query: 19 QHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEKKMKND 78
+ + RP GV ++ G DENGP LY DP+G ++ + GS + A + L+++ D
Sbjct: 472 EESMSRPFGVSLLIAG-HDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKD 648
Query: 79 PSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFRVLSTEEID 128
+ ET+ A++ L+ V++E +++ K P + + + E++
Sbjct: 649 LTLQEAETI--ALSILKQVMEEKVTPNNVDIA---KVAPTYHLYTPSEVE 783
>TC218551 homologue to UP|PSA5_SOYBN (Q9M4T8) Proteasome subunit alpha type 5
(20S proteasome alpha subunit E) (20S proteasome
subunit alpha-5) , partial (59%)
Length = 591
Score = 50.4 bits (119), Expect = 3e-07
Identities = 29/110 (26%), Positives = 57/110 (51%)
Frame = +2
Query: 19 QHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLEKKMKND 78
+ + RP GV ++ G DENGP LY DP+G ++ + GS + A + L+++ D
Sbjct: 95 EESMSRPFGVSLLIAG-HDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKD 271
Query: 79 PSFTYDETVQTAIAALQSVLQEDFKATEIEVGVVQKDKPEFRVLSTEEID 128
+ ET+ A++ L+ V++E +++ K P + + + E++
Sbjct: 272 LTLQEAETI--ALSILKQVMEEKVTPNNVDIA---KVAPTYHLYTPSEVE 406
>AW277971 similar to GP|22947842|gb 20S proteasome alpha 6 subunit {Nicotiana
benthamiana}, partial (72%)
Length = 598
Score = 50.4 bits (119), Expect = 3e-07
Identities = 29/90 (32%), Positives = 49/90 (54%)
Frame = +2
Query: 10 IADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAIN 69
+AD + V TQ ++ R GV +V G+D+ Y C P G+Y ++A + GS+ Q A
Sbjct: 332 LADNAHVSTQRSWKRTYGVGLLVAGLDES*AHLYYNC-PHGNYIEYQAFAIGSRSQAAET 508
Query: 70 FLEKKMKNDPSFTYDETVQTAIAALQSVLQ 99
+ E+K +N ++ ++ + AL S LQ
Sbjct: 509 Y*ERKFENYDGS*REDLIKKHLLALVSPLQ 598
>TC205194 homologue to UP|PSA7_CICAR (Q9SXU1) Proteasome subunit alpha type 7
(20S proteasome alpha subunit D) (20S proteasome
subunit alpha-4) , complete
Length = 1164
Score = 45.8 bits (107), Expect = 6e-06
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENG-PQLYKCDPAGHYFGHKATSAG 61
V+ + ++IA Q YTQ +RP G+ +++G D G P LY+ DP+G + G + G
Sbjct: 465 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFLGVE----G 632
Query: 62 SKDQEAINF 70
+ +E + F
Sbjct: 633 ERHREELEF 659
>TC215340 homologue to UP|PSA3_SPIOL (O24362) Proteasome subunit alpha type 3
(20S proteasome alpha subunit G) (20S proteasome
subunit alpha-7) (Proteasome component C8) , partial
(83%)
Length = 909
Score = 40.8 bits (94), Expect = 2e-04
Identities = 24/73 (32%), Positives = 39/73 (52%)
Frame = +1
Query: 1 MPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSA 60
+PV LA +A + T + ++RP G ++LG D +GPQLY +P+G + + +
Sbjct: 232 IPVKELADRVASYVHLCTLYWWLRPFGC-GVILGGYDRDGPQLYMVEPSGVSYRYFGAAI 408
Query: 61 GSKDQEAINFLEK 73
G Q A +EK
Sbjct: 409 GKGRQAAKTEIEK 447
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,642,990
Number of Sequences: 63676
Number of extensions: 48344
Number of successful extensions: 168
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of query: 138
length of database: 12,639,632
effective HSP length: 87
effective length of query: 51
effective length of database: 7,099,820
effective search space: 362090820
effective search space used: 362090820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146756.3