BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146755.8 + phase: 0 /pseudo
(1711 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 176 1e-43
CO982349 121 3e-27
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 75 3e-23
BI974689 76 2e-21
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 69 6e-21
CO986021 95 2e-19
TC222557 74 4e-19
TC231841 93 1e-18
TC213061 90 7e-18
TC231922 90 1e-17
CO984521 89 2e-17
TC213164 87 5e-17
TC221865 85 2e-16
CO979823 84 5e-16
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 84 5e-16
TC233956 84 7e-16
BI471325 65 2e-15
TC233392 79 1e-14
BG404993 79 1e-14
CA851073 79 2e-14
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 176 bits (445), Expect = 1e-43
Identities = 104/308 (33%), Positives = 160/308 (51%)
Frame = +1
Query: 900 LDNALVAIELIHYMKAKTKGSQGDVALKLDISKAYDRLDWEYLRDIMIQMRFSEKWIRWI 959
L +AL+A E+I K K + K+D KAYD + W +L +M +M FS KWI+WI
Sbjct: 1 LHSALIANEVIDEAKRSNKSC---LVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWI 171
Query: 960 MLCVETVDYTVLVNGVQVGPLIPGRGIRQGDPLSPYLFILCAEGLSALIRDAERRGVITG 1019
CV++ +VLVNG +P RG+RQGDPL+P+LF + AEGL+ L+R A +
Sbjct: 172 EECVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKP 351
Query: 1020 TRICTSAPAISHLLFADDCFLFFRASEQEASVMKNILTTYEAASGQAINLQKSEMYCSRN 1079
+ + IS L +ADD F A+++ +K IL ++E S IN KS +
Sbjct: 352 YLVGANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKS-CFGVFG 528
Query: 1080 TPTECQNRIATTLGVKQVLGTGKYLGLPSMIGRSKKATFKFVKDRIWNRINSWSSRCLSQ 1139
+ + A L + YLG+P + + + + +++ W R +S
Sbjct: 529 VTDQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISF 708
Query: 1140 AGREILIKSVLQSIPSYVMSIFLLPSTFIGEIEKMLNAFWWGHNSANSRGMHWLSWERLS 1199
GR LIKSVL SIP Y S F +P + + ++ K+ F WG + + + W+ WE+L
Sbjct: 709 GGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWG-GGPDQKKISWIRWEKLC 885
Query: 1200 VPKTFGGM 1207
+PK GG+
Sbjct: 886 LPKERGGI 909
>CO982349
Length = 795
Score = 121 bits (303), Expect = 3e-27
Identities = 74/244 (30%), Positives = 115/244 (46%)
Frame = +3
Query: 958 WIMLCVETVDYTVLVNGVQVGPLIPGRGIRQGDPLSPYLFILCAEGLSALIRDAERRGVI 1017
WI C+ + ++LVN + P RG+RQGDPL+P LF + AEGL+ L+R+A R
Sbjct: 69 WIRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRF 248
Query: 1018 TGTRICTSAPAISHLLFADDCFLFFRASEQEASVMKNILTTYEAASGQAINLQKSEMYCS 1077
+ + +S L +ADD F A+ + V+K IL +E ASG IN +S
Sbjct: 249 NSFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFGAI 428
Query: 1078 RNTPTECQNRIATTLGVKQVLGTGKYLGLPSMIGRSKKATFKFVKDRIWNRINSWSSRCL 1137
C+ A L + YLG+P + + + ++ W R +
Sbjct: 429 WKPDHWCK-EAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHI 605
Query: 1138 SQAGREILIKSVLQSIPSYVMSIFLLPSTFIGEIEKMLNAFWWGHNSANSRGMHWLSWER 1197
S GR LI ++L ++P Y S F PS + ++ + F WG S R + W+ WE
Sbjct: 606 SLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRR-IAWVKWET 782
Query: 1198 LSVP 1201
+ +P
Sbjct: 783 VCLP 794
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 75.1 bits (183), Expect(2) = 3e-23
Identities = 38/120 (31%), Positives = 63/120 (51%)
Frame = -3
Query: 956 IRWIMLCVETVDYTVLVNGVQVGPLIPGRGIRQGDPLSPYLFILCAEGLSALIRDAERRG 1015
++ + C+ T ++L NG + P G+RQ DP++PYLF+LC E LS LI +
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 1016 VITGTRICTSAPAISHLLFADDCFLFFRASEQEASVMKNILTTYEAASGQAINLQKSEMY 1075
+ ++ ISHL F DD LF A+ + V+ L + +SG +N+ K++ +
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSF 327
Score = 53.5 bits (127), Expect(2) = 3e-23
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = -2
Query: 1070 QKSEMYCSRNTPTECQNRIATTLGVKQVLGTGKYLGLPSMIGRSKKATFKFVKDRIWNRI 1129
Q + S+N + I++ LG++ GKYLG+P TF F+ D++ R
Sbjct: 342 QNQKFSFSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRF 163
Query: 1130 NSWSSRCLSQAGREILIKSVLQSIPSYVM 1158
+ W S LS GR L K V+ ++PS++M
Sbjct: 162 SRWKSNLLSMVGRLTLTK*VV*ALPSHIM 76
>BI974689
Length = 409
Score = 76.3 bits (186), Expect(2) = 2e-21
Identities = 31/55 (56%), Positives = 43/55 (77%)
Frame = -1
Query: 1387 RVPGKWNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPPTCAICNNHEE 1441
R+ G W IW LK+PPK+K+ + R+ R+CLP+R+RL +KGVQCP TCA C+N+ E
Sbjct: 403 RLQGNWKKIWALKVPPKVKHLIRRIQRDCLPSRVRLHAKGVQCPSTCAFCHNNLE 239
Score = 46.2 bits (108), Expect(2) = 2e-21
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 1448 FACSKSVGCWQRLGFWPSIQQIWSHNAFCADIIFSLLQQLDIAHQ-QIFAVTLWSLWRHR 1506
F C V W G WP IQQ + +IF L+ L++ A+ L ++WR +
Sbjct: 236 FGCEHVVSVWMASGLWPKIQQQVHNAEVIQQLIFPLMDALNLDQDYNK*AIILRTIWRRQ 57
Query: 1507 NNKVWNNI 1514
N KVW ++
Sbjct: 56 NEKVWEDV 33
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 69.3 bits (168), Expect(2) = 6e-21
Identities = 38/100 (38%), Positives = 60/100 (60%)
Frame = -3
Query: 898 SILDNALVAIELIHYMKAKTKGSQGDVALKLDISKAYDRLDWEYLRDIMIQMRFSEKWIR 957
+I D V E+I+ + K G G++ALK+DI KA+D LD ++L ++ + +S +
Sbjct: 837 TIKDCTCVTSEVINMLDKKVFG--GNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCN 664
Query: 958 WIMLCVETVDYTVLVNGVQVGPLIPGRGIRQGDPLSPYLF 997
WI + + + ++ VNG VG RG+RQGDPLSP L+
Sbjct: 663 WIRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
Score = 51.6 bits (122), Expect(2) = 6e-21
Identities = 34/132 (25%), Positives = 61/132 (45%)
Frame = -2
Query: 1030 SHLLFADDCFLFFRASEQEASVMKNILTTYEAASGQAINLQKSEMYCSRNTPTECQNRIA 1089
SH++ ADD +F + + + + N Y+ + GQ I+ KS+++ + P + I+
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIG-SIPGQRLRVIS 275
Query: 1090 TTLGVKQVLGTGKYLGLPSMIGRSKKATFKFVKDRIWNRINSWSSRCLSQAGREILIKSV 1149
L Y G+P G+ + V D+I ++ SW LS GR L+ SV
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 1150 LQSIPSYVMSIF 1161
+ + Y S++
Sbjct: 94 IHGMLLYSFSVY 59
>CO986021
Length = 900
Score = 95.1 bits (235), Expect = 2e-19
Identities = 65/234 (27%), Positives = 108/234 (45%), Gaps = 18/234 (7%)
Frame = -1
Query: 1322 NTKEWNENFIRYVFNAETSNQILQTPLLQSVQV-----DKATWRFEKNGLYSVRSAYREI 1376
NT W+ + R +F+ E I + ++ + D W+ + G+YS +SAYR
Sbjct: 897 NTWNWDFKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYR-- 724
Query: 1377 INRNDVLLQHRVPGK----WNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPPT 1432
+LL + PG+ + I+W LK+PP+ + F WR+ R+ L R L+ + V
Sbjct: 723 -----LLLPNNRPGQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHVALQDI 559
Query: 1433 -CAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHNAFCADIIFSLLQQLD--I 1489
C +C NH+E+ HLFF C ++G W W S+ + AF D +Q D
Sbjct: 558 MCPLCGNHQEEAGHLFFHCRMTIGLW-----WESMNWTRTLGAFLDDPAAHFIQFSDGFG 394
Query: 1490 AHQQIFAVTLW------SLWRHRNNKVWNNIVETTEEIGDRAVAFLNSWKAAQE 1537
A + LW ++W+HRN+ ++ ++ D A+ +W A E
Sbjct: 393 AQRNHNRRCLWWIALTSTIWQHRNSLLFKGTPFQPPKVMDDALFHAWTWLKATE 232
>TC222557
Length = 1002
Score = 73.9 bits (180), Expect(2) = 4e-19
Identities = 41/142 (28%), Positives = 64/142 (44%), Gaps = 4/142 (2%)
Frame = +1
Query: 1395 IWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPPT-CAICNNHEEDGKHLFFACSKS 1453
+W LK+P K F WR+ + +PT+ L + VQ C CN EE+ HLFF C +
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRVQLNNLMCPFCNRQEEEASHLFFNCPRI 618
Query: 1454 VGCWQRLGFWPSIQQIWS---HNAFCADIIFSLLQQLDIAHQQIFAVTLWSLWRHRNNKV 1510
+ W W ++S + + S + L + + WS+WRHRN V
Sbjct: 619 LPLWWESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWVALTWSIWRHRNRIV 798
Query: 1511 WNNIVETTEEIGDRAVAFLNSW 1532
+ N ++ D A+ + SW
Sbjct: 799 FLNKAFNGSKLMDDAIFLVWSW 864
Score = 40.8 bits (94), Expect(2) = 4e-19
Identities = 30/121 (24%), Positives = 50/121 (40%), Gaps = 10/121 (8%)
Frame = +3
Query: 1267 SVRDYLKHGLKWSIGTGETISVWNQPWL--KDPLCLQPVTEVQIMWDA---LTVGHLFKP 1321
+V + + W +G G+ I W WL ++PL + I + V
Sbjct: 36 AVHGLFQSAIDWKVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLILVMGFHSA 215
Query: 1322 NTKEWNENFIRYVFNAETSNQILQTPLLQSVQVDKAT-----WRFEKNGLYSVRSAYREI 1376
N EW + R++F+ E + +D+ T W+ E NG +S RSAYR +
Sbjct: 216 NVWEWKLEWRRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRML 395
Query: 1377 I 1377
+
Sbjct: 396 L 398
>TC231841
Length = 791
Score = 92.8 bits (229), Expect = 1e-18
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Frame = +3
Query: 1349 LQSVQVDKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFL 1408
+Q Q D+ W+ + +G Y+ +SAY + + + + G + +W LKLP KI F
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGE---MFEEQQDGVFEELWKLKLPSKITIFA 215
Query: 1409 WRVCRNCLPTRMRLISKGVQC-PPTCAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQ 1467
WR+ R+ LPTR L K ++ P C C + EE HLFF CS+ W W ++
Sbjct: 216 WRLIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLL 395
Query: 1468 QIWSHN--AFCADIIFSLLQQLDIAHQQIFAVTL-WSLWRHRNNKVWNNIVETTEEIGDR 1524
++ ++ I+ + + + + + + L W++W+ RNN +++N +I D
Sbjct: 396 GVFPNHPRQHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANKILDE 575
Query: 1525 AVAFLNSWKAAQETRIRSSPANPHFDISKWSKPSVGRFKCNVDAAFSAS 1573
A+ + +W E + H+ ++WS N+ AAFS S
Sbjct: 576 AIFLIWTWLTHLE-----KDFSIHY--NQWSS--------NIRAAFSNS 677
>TC213061
Length = 823
Score = 90.1 bits (222), Expect = 7e-18
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 14/222 (6%)
Frame = +2
Query: 1325 EWNENFIRYVFNAETSN-----QILQTPLLQSVQVDKATWRFEKNGLYSVRSAYREIINR 1379
EW + R +F++E Q ++ ++S D+ W E +G Y RSAYR I
Sbjct: 23 EWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYRVI--- 193
Query: 1380 NDVLLQHRVPGKWNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPP-TCAICNN 1438
+ + + ++ +W LK+P K+ F WR+ ++ LPTR L K V+ C +C +
Sbjct: 194 REGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRVELHEYVCPLCRS 373
Query: 1439 HEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHNAFCADIIFSLLQQLDIAHQQI---- 1494
+E HLFF CSK + W W S+ + AF Q +Q +
Sbjct: 374 MDESASHLFFHCSKILPIW-----WESLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQGNR 538
Query: 1495 ----FAVTLWSLWRHRNNKVWNNIVETTEEIGDRAVAFLNSW 1532
+ W++W+HRN+ +++N ++ D AV + +W
Sbjct: 539 WKWWWLALTWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTW 664
>TC231922
Length = 803
Score = 89.7 bits (221), Expect = 1e-17
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 13/239 (5%)
Frame = -3
Query: 1263 RSLWSVRDY--LKHGLKWSIGTGETISVWNQPWLKDPLCLQPVTEVQIMWDA---LTVGH 1317
R L++ D+ + + W +G G+ I W WL + LQ LT+
Sbjct: 756 RRLYNQPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ*NLTISK 577
Query: 1318 L--FKPNTKEWNENFIRYVFNAETSNQI-----LQTPLLQSVQVDKATWRFEKNGLYSVR 1370
+ F N + W + R +F+ E + + + +Q+ D W+ + +G+YS +
Sbjct: 576 MGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTK 397
Query: 1371 SAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCP 1430
SAYR ++ R+ + I+W+LK+PP+ F WR+ + LPTR L + +
Sbjct: 396 SAYRLLMPSISPAPSRRI---FQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQ 226
Query: 1431 P-TCAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHNAFCADIIFSLLQQLD 1488
C +C E+ HLFF C + G W W S++ I A AD +Q D
Sbjct: 225 DIMCPLCGCQHEEAGHLFFHCKMTKGLW-----WESMRWIRVIGALPADPASHFIQFCD 64
>CO984521
Length = 716
Score = 89.0 bits (219), Expect = 2e-17
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Frame = -2
Query: 1355 DKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFLWRVCRN 1414
D+ W E +G YS +SAY+ + + V + GK+ +W L++P K+ F WR+ ++
Sbjct: 646 DQWKWAAEPSGCYSTKSAYKAL---HHVTVGEEQDGKFKELWKLRVPLKVAIFAWRLIQD 476
Query: 1415 CLPTRMRLISKGVQCPP-TCAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSH- 1472
LPT+ L K V+ C +C + EE HLFF CSK W W ++ ++ +
Sbjct: 475 KLPTKANLRKKRVELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQSWVNMMGVFPYQ 296
Query: 1473 -NAFCADIIFSLLQQLDIAHQQ--IFAVTLWSLWRHRNNKVWNNIVETTEEIGDRAVAFL 1529
+ + IF L Q FA+T +S+W+HRN+ +++N ++ D AV L
Sbjct: 295 PDQHFSQHIFGASVGLQGKRWQWWWFALT-YSIWKHRNSIIFSNANFDAHKLMDDAVFIL 119
Query: 1530 NSW 1532
+W
Sbjct: 118 WTW 110
>TC213164
Length = 446
Score = 87.4 bits (215), Expect = 5e-17
Identities = 47/134 (35%), Positives = 76/134 (56%)
Frame = +3
Query: 777 LTAAFTLEEFKTAAFSMQADKCPGPDGFNPGFYQNFWNMCGSEIHKAGCEWLENGVFPPH 836
L A F +E + + K PGPDG N F + FW++ +++ + E+ NGVF
Sbjct: 18 LVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLKR 197
Query: 837 LNSTNIALIPKGDAQTTMKDWRPIALCNVVYKMVAKVLANRLKNVLDKCISTSQSAFVPG 896
N+ +ALIPK ++ +++PI+L +YK+VAK+L+ R K VL I Q+ F+ G
Sbjct: 198 SNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFMEG 377
Query: 897 RSILDNALVAIELI 910
R L N ++A E++
Sbjct: 378 RHTLHNVVIANEIM 419
>TC221865
Length = 1045
Score = 85.1 bits (209), Expect = 2e-16
Identities = 79/289 (27%), Positives = 125/289 (42%), Gaps = 28/289 (9%)
Frame = -3
Query: 1272 LKHGLKWSIGTGETISVWNQPWL--------KDPLCLQPVTEVQIMWDALTVGHLFKPNT 1323
L++ + W +G G+ W + K P Q + Q + VG T
Sbjct: 947 LQNEIVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQ--VGS-HTETT 777
Query: 1324 KEWNENFIRYVFNAETSN------QILQTPLLQSVQVDKATWRFEKNGLYSVRSAYREII 1377
EW + R +F+ E I + P+ + + D W+ E NG YS RSAY
Sbjct: 776 WEWKFQWRRPLFDNEVDTTIGFLEDISRFPIHRHL-TDCWVWKSEPNGHYSTRSAYH--- 609
Query: 1378 NRNDVLLQHRVPGK-----WNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPPT 1432
L+QH + IW LK+P K F R+ ++ LPT+ L + VQ T
Sbjct: 608 -----LMQHEAAKANTDPAFEEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQVQLNGT 444
Query: 1433 -CAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHNAFCAD-------IIFSLL 1484
C C N+EE+ HLFF+C+K+ W W S+ I + AF A+ F LL
Sbjct: 443 LCLFCRNYEEEASHLFFSCTKTQPVW-----WESLSWINTSGAFSANPRHHFLQHSFGLL 279
Query: 1485 QQLDIAHQQIFAVTL-WSLWRHRNNKVWNNIVETTEEIGDRAVAFLNSW 1532
+ + V L +++W+HRN +++N ++ + A+ + SW
Sbjct: 278 GLKQYNR*KCWWVALTFTIWQHRNRTIFSNEPFNGSKMMEDAMFLVWSW 132
>CO979823
Length = 853
Score = 84.0 bits (206), Expect = 5e-16
Identities = 60/208 (28%), Positives = 91/208 (42%), Gaps = 7/208 (3%)
Frame = -2
Query: 1355 DKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFLWRVCRN 1414
DK W+ E G YS +S Y + L + + IW LK+P K F WR+ R+
Sbjct: 702 DKWLWKPEPGGHYSTKSGYHVLWGE---LTEEIQDADFAEIWKLKIPTKAAVFAWRLVRD 532
Query: 1415 CLPTRMRLISKGVQCPP-TCAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHN 1473
LPT+ L + V C +CNN EE HLFF C+K++ W W +++
Sbjct: 531 RLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKTAMPQT 352
Query: 1474 ------AFCADIIFSLLQQLDIAHQQIFAVTLWSLWRHRNNKVWNNIVETTEEIGDRAVA 1527
+ DI L + + + W++W+HRN V+ N ++ + A+
Sbjct: 351 PRQHFLQYGTDIADGLKSK---RWKCWWIALTWTIWQHRNKVVFQNATFHGNKVLEDALL 181
Query: 1528 FLNSWKAAQETRIRSSPANPHFDISKWS 1555
L SW A E N HF ++WS
Sbjct: 180 LLWSWFKALE-----KDFNLHF--NQWS 118
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 84.0 bits (206), Expect = 5e-16
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +2
Query: 1159 SIFLLPSTFIGEIEKMLNAFWWGHNSANSRGMHWLSWERLSVPKTFGGMGFKSLRAFNLA 1218
S F LP I ++E + F WG A+SR + W++W+ + +PK GG+G K LR FN
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWG-GEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTT 181
Query: 1219 MIGKQAWKLISNPDSLITKLLKAKYFPHSDYFSASIGHNPSYVWRSLWSVRDY-----LK 1273
++GK W L K+L++KY S G S W+ L + LK
Sbjct: 182 LLGKWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLK 361
Query: 1274 HGLKWSIGTGETISVWNQPWLKDPLCLQ 1301
W +G G+ I W W L L+
Sbjct: 362 RETIWKVGGGDRIKFWEDLWTNTDLSLR 445
>TC233956
Length = 757
Score = 83.6 bits (205), Expect = 7e-16
Identities = 54/187 (28%), Positives = 85/187 (44%), Gaps = 9/187 (4%)
Frame = +2
Query: 1355 DKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFLWRVCRN 1414
D WR E G+ S +SAY+ I + D QH K +W +K+PPK +F+WR+ +
Sbjct: 59 DTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKK---LWEIKVPPKALSFVWRLLWD 229
Query: 1415 CLPTRMRLISKGVQC-PPTCAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQQIWSHN 1473
LPT+ LI + +Q C C++ E HLFF C K + W W + +
Sbjct: 230 RLPTKDNLIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPLW-----WEFLSWVKEDK 394
Query: 1474 AFCADIIFSLLQQLDIAHQQIFAV--TLW------SLWRHRNNKVWNNIVETTEEIGDRA 1525
F + + LQ A ++ T+W S+WR RN+ ++ N + D
Sbjct: 395 VFHCRPMDNFLQHYSSAASKVSNTRRTMWWIAVTNSIWRLRNDIIFQNQTVDITRLTDST 574
Query: 1526 VAFLNSW 1532
+ L +W
Sbjct: 575 LFLLWTW 595
>BI471325
Length = 421
Score = 64.7 bits (156), Expect(2) = 2e-15
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +2
Query: 1029 ISHLLFADDCFLFFRASEQEASVMKNILTTYEAASGQAINLQKSEMYCSRNTPTECQNRI 1088
+SHLL D FLF R ++EA V+KNILTT+EA+SG +NL+KSE+ SRNT ++ I
Sbjct: 44 LSHLLSVDFYFLFCRTIDKEADVLKNILTTFEASSGLVVNLRKSEICFSRNTSQIARDSI 223
Query: 1089 ATTLGV 1094
LG+
Sbjct: 224 FFHLGM 241
Score = 37.4 bits (85), Expect(2) = 2e-15
Identities = 24/61 (39%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Frame = +1
Query: 1102 KYLGLPSMIGRSKKATFKFVKD---RIWNRINSWSSRCLSQAGREILIKSVLQSIPSYVM 1158
+YL +PSMI KKA F +++D RI++ + S Q + ++IK V QSI +Y M
Sbjct: 241 EYLDMPSMIRTKKKAIFNYLRDEFGRIYSTLVQQES-FKGQREKCLIIKYVAQSITTYCM 417
Query: 1159 S 1159
S
Sbjct: 418 S 420
>TC233392
Length = 1145
Score = 79.3 bits (194), Expect = 1e-14
Identities = 60/211 (28%), Positives = 87/211 (40%), Gaps = 9/211 (4%)
Frame = -1
Query: 1336 NAETSNQILQTPLLQSVQVDKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGK---- 1391
N T N Q +Q D W+ E N LYS RSAY+ LLQ + G+
Sbjct: 704 NVSTQNSHAQ---IQQQVPDTWVWKHEPNELYSTRSAYK--------LLQGHLEGEDQDG 558
Query: 1392 -WNIIWNLKLPPKIKNFLWRVCRNCLPTRMRLISKGVQCPPT-CAICNNHEEDGKHLFFA 1449
+W LK+P K F WR+ R+ LPT+ L + V + C C EED H+F
Sbjct: 557 ALQDLWKLKIPAKASIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLE 378
Query: 1450 CSKSVGCWQRLGFWP---SIQQIWSHNAFCADIIFSLLQQLDIAHQQIFAVTLWSLWRHR 1506
C+K W W + I F + + + + + WSLW+HR
Sbjct: 377 CNKIRPLWWESQTWVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHR 198
Query: 1507 NNKVWNNIVETTEEIGDRAVAFLNSWKAAQE 1537
N ++ N ++ + AV +W A E
Sbjct: 197 NQVIFQNAQFNGIKLLEDAVFLHWTWIRAME 105
>BG404993
Length = 412
Score = 79.3 bits (194), Expect = 1e-14
Identities = 39/116 (33%), Positives = 63/116 (53%), Gaps = 1/116 (0%)
Frame = -3
Query: 1349 LQSVQVDKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFL 1408
+Q + D TW+ + +G YS ++AY + + + G + +W LK+PPK F
Sbjct: 350 IQQHEADSWTWKADPSGNYSTKTAYELL---QEAIRGDNEDGIFVQLWKLKIPPKAPVFT 180
Query: 1409 WRVCRNCLPTRMRLISKGVQCPPT-CAICNNHEEDGKHLFFACSKSVGCWQRLGFW 1463
WR+ + LPT++ L + V+ + C +CNN EED HLFF C+K++ W W
Sbjct: 179 WRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWESLSW 12
>CA851073
Length = 633
Score = 79.0 bits (193), Expect = 2e-14
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 6/195 (3%)
Frame = +1
Query: 1349 LQSVQVDKATWRFEKNGLYSVRSAYREIINRNDVLLQHRVPGKWNIIWNLKLPPKIKNFL 1408
+QS D W+ + G+YS +SAYR ++ N + + + + IW LK+PP+ F
Sbjct: 10 IQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANI---FKTIWKLKIPPRAAVFS 180
Query: 1409 WRVCRNCLPTRMRLISKGVQCPPT-CAICNNHEEDGKHLFFACSKSVGCWQRLGFWPSIQ 1467
WR+ ++ LPTR L+ + V C +C +E+ HLFF C + G W W I
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQI- 357
Query: 1468 QIWSHNAFCADIIFSLLQQLDIAHQQIFAVTLW-----SLWRHRNNKVWNNIVETTEEIG 1522
+ + A W S+W+HRN ++ ++
Sbjct: 358 -VGPLSVSPASHFVQFCDGFGAGRNHTRWCGWWIALTSSIWKHRNLLIFQGNQFEPSKVM 534
Query: 1523 DRAVAFLNSWKAAQE 1537
D A+ SW +E
Sbjct: 535 DDALFLAWSWLKVRE 579
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.333 0.142 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,535,241
Number of Sequences: 63676
Number of extensions: 1516643
Number of successful extensions: 12114
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 11676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12032
length of query: 1711
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1601
effective length of database: 5,635,272
effective search space: 9022070472
effective search space used: 9022070472
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146755.8