BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146755.11 + phase: 0
(246 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD396637 214 2e-56
TC213305 weakly similar to UP|Q9FHB8 (Q9FHB8) Arabidopsis thalia... 177 4e-45
TC217322 139 9e-34
BE659962 96 2e-20
TC217324 72 3e-13
AW734057 59 2e-09
TC212058 49 2e-06
AW567977 44 9e-05
TC217323 36 0.018
TC213035 similar to UP|Q960C4 (Q960C4) SD07741p, partial (3%) 28 2.9
TC206332 28 2.9
BM086513 weakly similar to GP|9759492|dbj nuclear pore protein-l... 28 3.8
BU551338 28 5.0
TC232421 28 5.0
TC231744 27 6.5
TC228200 27 6.5
TC226018 weakly similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosom... 27 8.5
>CD396637
Length = 537
Score = 214 bits (546), Expect = 2e-56
Identities = 102/127 (80%), Positives = 112/127 (87%)
Frame = -1
Query: 118 GLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNS 177
GLYAPIAYIL GIFEGDKEGIKAA PHVFLL+SQVFMEGVAFS FS+P+RAFVPV YNS
Sbjct: 507 GLYAPIAYILEGIFEGDKEGIKAAAPHVFLLSSQVFMEGVAFSGRFSTPMRAFVPVFYNS 328
Query: 178 RRIFTIVDWLRDEISKVGEEHSGSYKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFK 237
RRIFTIVDWLR EI+KV E HSGS +RI+ G LAVANMAFWCFNLFGFL+PVYLP+VF+
Sbjct: 327 RRIFTIVDWLRSEINKVNEVHSGSDRRIFVGMVLAVANMAFWCFNLFGFLLPVYLPKVFR 148
Query: 238 AYYSSQK 244
YY+ K
Sbjct: 147 LYYAGHK 127
>TC213305 weakly similar to UP|Q9FHB8 (Q9FHB8) Arabidopsis thaliana genomic
DNA, chromosome 5, TAC clone:K24M7, partial (21%)
Length = 547
Score = 177 bits (449), Expect = 4e-45
Identities = 83/105 (79%), Positives = 93/105 (88%)
Frame = +3
Query: 140 AATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVIYNSRRIFTIVDWLRDEISKVGEEHS 199
AA PHVFLL+SQVFMEGVAFS FS+P+RAFVPV YNSRRIFTIVDWLR EI+KV EEHS
Sbjct: 3 AAAPHVFLLSSQVFMEGVAFSGMFSTPMRAFVPVFYNSRRIFTIVDWLRSEINKVNEEHS 182
Query: 200 GSYKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFKAYYSSQK 244
GS +RI+ GR LAVANMAFWCFNLFGFL+PVYLP+VF+ YY+ K
Sbjct: 183 GSDRRIFVGRVLAVANMAFWCFNLFGFLLPVYLPKVFRLYYAGHK 317
>TC217322
Length = 1077
Score = 139 bits (351), Expect = 9e-34
Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
Frame = +1
Query: 49 QLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILK 108
+L +A ++V SASG+V D F + Y+ +S AFPS S + +I K
Sbjct: 256 ELQLVAFILVFSASGLVPLLDLVFPALASAYILALSLFAFPSSSSSSTRSLHDSGTEIFK 435
Query: 109 ------IYVFIGAIIGLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFS-N 161
+YV +G +GL+ P+AY+L G GD+ +++ATPH+FLL+ Q+ E + +
Sbjct: 436 GGRLFRMYVVVGITVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIIGGLS 615
Query: 162 GFSSPIRAFVPVIYNSRRIFTIVDWLRDEISKVGEEHSGSYKRI---YAGRALAVANMAF 218
FS P+RA VP+IY RRIF +DW+ D + +++ + + G+ LAVAN+A+
Sbjct: 616 MFSPPVRALVPMIYTVRRIFVDIDWIHDVWLNKTLPVNATFQDLAWYWFGKGLAVANLAY 795
Query: 219 WCFNLFGFLIPVYLPRVFKAYYSSQ 243
NLFGFLIP +LPR F+ Y+ +
Sbjct: 796 LSINLFGFLIPRFLPRAFERYFQDK 870
>BE659962
Length = 667
Score = 95.5 bits (236), Expect = 2e-20
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 49 QLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILK 108
+L +A +V SASG+V D + IY+ + + AFPSH P + + +
Sbjct: 168 ELQLVAFALVFSASGLVPLLDLAYSALISIYLMLLGRFAFPSHGCAPGPMF--HESGLFQ 341
Query: 109 IYVFIGAIIGLYAPIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGVAFSNGF-SSPI 167
+YV +G +GL+ P+AY+L G GDK+ +++A+PH+FLLA Q+ E V S S P+
Sbjct: 342 VYVVVGTTVGLFLPLAYVLGGFGRGDKQAVRSASPHLFLLAFQILTENVISSFSLVSPPV 521
Query: 168 RAFVPVIYNSRRIFTIV 184
RA VP++Y R I+
Sbjct: 522 RAMVPLMYTVPRTLWIL 572
>TC217324
Length = 545
Score = 71.6 bits (174), Expect = 3e-13
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Frame = +1
Query: 163 FSSPIRAFVPVIYNSRRIFTIVDWLRDEISKVGEEHSGSYKRI---YAGRALAVANMAFW 219
FS P+RA VP+ RRIF +DW+ D + ++ + + G+ LAVAN+A++
Sbjct: 7 FSPPVRALVPIXXTIRRIFVDIDWIHDXXLNKTLPVNAKFQDLAWYWFGKGLAVANLAYF 186
Query: 220 CFNLFGFLIPVYLPRVFKAYYSSQ 243
NLFGFLIP +LPR F+ Y+ +
Sbjct: 187 SINLFGFLIPRFLPRAFERYFQEK 258
>AW734057
Length = 417
Score = 59.3 bits (142), Expect = 2e-09
Identities = 32/54 (59%), Positives = 40/54 (73%), Gaps = 4/54 (7%)
Frame = +3
Query: 1 MSGGVGPTGCDISLPKEEQEIEHKEEQD----KSLNKSTSTPQRKTSFLSFRQL 50
MSGGVGPTG DISLP +EQE+ HKE Q+ K+L+K+ +T K +FLSFR L
Sbjct: 258 MSGGVGPTGSDISLP-QEQEVGHKEPQEQHSLKNLHKTITTTPHKPTFLSFRHL 416
>TC212058
Length = 1017
Score = 48.9 bits (115), Expect = 2e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 208 GRALAVANMAFWCFNLFGFLIPVYLPRVFKAYYSSQ 243
G+ LAVAN+A++ NLFGFLIP +LPR F+ Y+ +
Sbjct: 685 GKGLAVANLAYFSINLFGFLIPRFLPRAFERYFQDK 792
>AW567977
Length = 132
Score = 43.5 bits (101), Expect = 9e-05
Identities = 16/36 (44%), Positives = 26/36 (71%)
Frame = +3
Query: 122 PIAYILHGIFEGDKEGIKAATPHVFLLASQVFMEGV 157
P+AY+L G GD+ +++ATPH+FLL+ Q+ E +
Sbjct: 6 PLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENI 113
>TC217323
Length = 516
Score = 35.8 bits (81), Expect = 0.018
Identities = 23/66 (34%), Positives = 37/66 (55%)
Frame = +1
Query: 49 QLNCLAVVVVLSASGMVSPEDFGFVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILK 108
+L +A ++V SASG+V D F F+ Y+ +S+ AFPS S IF + ++ +
Sbjct: 325 ELQLVAFILVFSASGLVPLLDLVFPAFASAYILALSQFAFPS-ASSSGTEIF-KGSRLFR 498
Query: 109 IYVFIG 114
+YV G
Sbjct: 499 MYVVFG 516
>TC213035 similar to UP|Q960C4 (Q960C4) SD07741p, partial (3%)
Length = 851
Score = 28.5 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 57 VVLSASGMVSPEDFGFVLFSVIYMCF 82
++L S +S EDF F+LF V Y CF
Sbjct: 562 LILELSFFLSFEDFFFLLFLVAYYCF 485
>TC206332
Length = 519
Score = 28.5 bits (62), Expect = 2.9
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = +3
Query: 74 LFSVIYMCFISKVAFPSHPSKEQPPIFTQQIKILKIYVFIGAIIGLYAPIA 124
LFS++Y S + FPSH S I IL + F+ G Y P A
Sbjct: 123 LFSLLYKFLSSSIVFPSHSS-----ISISSHGILACHSFLSLSHGHYVPCA 260
>BM086513 weakly similar to GP|9759492|dbj nuclear pore protein-like
{Arabidopsis thaliana}, partial (5%)
Length = 429
Score = 28.1 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 46 SFRQLNCLAVVVVLSASGMVSPEDFGFVLFSV---IYMCFISKVA 87
SF LNCL + + S S V E+ V FS+ +CF+ +++
Sbjct: 155 SFTMLNCLDMDIAFSISCFVYAENIRVVSFSIKRYCIVCFMERIS 21
>BU551338
Length = 545
Score = 27.7 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +1
Query: 202 YKRIYAGRALAVANMAFWCFNLFGFLIPVYLPRVFKAYYSSQK 244
YK+ Y G+ +++ + F CFNL + R + AY S +K
Sbjct: 64 YKK*YPGKHISL*FLLFHCFNLLLHFYLIKATRKYDAYIS*KK 192
>TC232421
Length = 423
Score = 27.7 bits (60), Expect = 5.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 160 SNGFSSPIRAFVPVIYNSRRIFTIVDWLRDEISKVGEEHSG 200
S SPIR FV + N RR+ I D++ +S + E SG
Sbjct: 71 STSIFSPIRQFVLSLLNFRRVLPIFDFVLQHLS-LPESRSG 190
>TC231744
Length = 794
Score = 27.3 bits (59), Expect = 6.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 72 FVLFSVIYMCFISKVAFPSHPSKEQPPIFTQQ-IKILKIYVFIGAIIGL--YAPIAYILH 128
FVL SVI + KV ++ +FT+ +K L+ IG + + Y P A+ILH
Sbjct: 241 FVLLSVIAHFELPKVCRKRDQNQVHEQVFTKL*LK*LEFRCEIGYLHNVLPYVPFAFILH 62
Query: 129 G 129
G
Sbjct: 61 G 59
>TC228200
Length = 1002
Score = 27.3 bits (59), Expect = 6.5
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 12 ISLPKEEQEIEHKEEQDKSLNKSTSTPQRKTSFLSFRQLNCLAVVVVLSASGM 64
+S+ E + +EE+ + LNK+T++ SFLS +VV LS +G+
Sbjct: 608 LSIHDEMFYLREREEEMQDLNKATNSKMFTFSFLS--------IVVCLSVAGL 742
>TC226018 weakly similar to UP|Q8H2B9 (Q8H2B9) 60s acidic ribosomal protein,
complete
Length = 1040
Score = 26.9 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 2 SGGVGPTGCDISLPKEEQEIEHKEEQDKSLNKS 34
+GG G + KEE+++E KEE D + S
Sbjct: 758 AGGAGGGAAPAAEAKEEKKVEEKEESDDDMGFS 856
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,907,411
Number of Sequences: 63676
Number of extensions: 142587
Number of successful extensions: 1100
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of query: 246
length of database: 12,639,632
effective HSP length: 95
effective length of query: 151
effective length of database: 6,590,412
effective search space: 995152212
effective search space used: 995152212
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146755.11