BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.5 + phase: 2 /pseudo/partial
(273 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI973593 similar to GP|16416383|dbj anthocyanin-related membrane... 90 1e-18
BE821765 69 3e-12
TC221167 weakly similar to UP|Q948Q7 (Q948Q7) Anthocyanin-relate... 62 4e-10
TC220296 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-... 59 3e-09
BE657772 30 1.2
TC204229 homologue to UP|SARA_ARATH (O04834) GTP-binding protein... 28 3.4
CF808667 28 4.4
TC222248 weakly similar to GB|AAC51925.1|2708305|AF016369 U4/U6 ... 28 5.8
AW397853 similar to SP|Q43070|GAE1_ UDP-glucose 4-epimerase (EC ... 27 9.9
>AI973593 similar to GP|16416383|dbj anthocyanin-related membrane protein 1
{Arabidopsis thaliana}, partial (16%)
Length = 436
Score = 89.7 bits (221), Expect = 1e-18
Identities = 45/58 (77%), Positives = 47/58 (80%)
Frame = +3
Query: 2 NGTIIYFLDWLMWKQIFLL*RHINTPHLQV*CYLTAGLFHASCCLHGFS*KQNIDSRR 59
NG I YFLDWLM KQIFLL*RHIN H QV*C LTAG H SC LHGFS*KQN+DS+R
Sbjct: 258 NGIITYFLDWLMLKQIFLL*RHINIHH*QV*CCLTAGPSHVSCFLHGFS*KQNMDSKR 431
>BE821765
Length = 597
Score = 68.6 bits (166), Expect(2) = 3e-12
Identities = 38/51 (74%), Positives = 39/51 (75%)
Frame = -2
Query: 198 LSSMVLLC*ICLF*PQTCGLS*FASSLTMRRLIGCTTWRLVLLSSALLSTL 248
L SMV LC*ICL+* TCGLS*FA LTMRRLIGCT W LVLL LSTL
Sbjct: 491 LRSMVPLC*ICLY*XLTCGLS*FAFLLTMRRLIGCTMWPLVLLLLVSLSTL 339
Score = 20.0 bits (40), Expect(2) = 3e-12
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 183 AQ*A*IYSLVGWG 195
AQ A IYS V WG
Sbjct: 595 AQXAQIYSXVSWG 557
>TC221167 weakly similar to UP|Q948Q7 (Q948Q7) Anthocyanin-related membrane
protein 3, partial (33%)
Length = 757
Score = 61.6 bits (148), Expect = 4e-10
Identities = 33/44 (75%), Positives = 33/44 (75%)
Frame = +1
Query: 197 CLSSMVLLC*ICLF*PQTCGLS*FASSLTMRRLIGCTTWRLVLL 240
CL SMVL C*ICL *PQTCGLS*F TMRRLIGCT LV L
Sbjct: 181 CLRSMVLQC*ICLC*PQTCGLS*FVFLRTMRRLIGCTLCHLVPL 312
>TC220296 similar to GB|BAB70612.1|16416383|AB060644 anthocyanin-related
membrane protein 1 {Arabidopsis thaliana;} , partial
(34%)
Length = 497
Score = 58.5 bits (140), Expect = 3e-09
Identities = 37/60 (61%), Positives = 42/60 (69%), Gaps = 4/60 (6%)
Frame = +1
Query: 1 QNGTIIYFLDWLMWKQIFLL*RHINTPH----LQV*CYLTAGLFHASCCLHGFS*KQNID 56
QNGTII F DWLM KQIFLL*RH NTPH + + C+ + + HAS GFS*KQNID
Sbjct: 325 QNGTII*FSDWLM*KQIFLL*RHTNTPHSXSVMLLDCW-SXPVRHAS--YMGFS*KQNID 495
>BE657772
Length = 421
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/62 (38%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = +1
Query: 204 LC*ICLF*PQTCGLS*FAS-SLTMRRLIGCTTWRLVLLSSALLSTLCTYCCTFIS*TSCS 262
LC L *P+T S F+S L+ R I T W L+ S LLS+ TF+S + S
Sbjct: 118 LCIHHLL*PRTLPYSLFSSCQLSHRASIPLTKWLLLSPRSILLSSFLLCLLTFLSPDNQS 297
Query: 263 VW 264
W
Sbjct: 298 RW 303
>TC204229 homologue to UP|SARA_ARATH (O04834) GTP-binding protein SAR1A,
partial (52%)
Length = 604
Score = 28.5 bits (62), Expect = 3.4
Identities = 14/24 (58%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = +1
Query: 187 *IYSLVGWGI-CLSSMVLLC*ICL 209
*I+SLVGWGI CL +LL +C+
Sbjct: 466 *IFSLVGWGIFCLKHWILL*GLCM 537
>CF808667
Length = 738
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = -1
Query: 196 ICLSSMVLLC*ICLF*PQTCGLS*FASSLTMRRLIGCTTWRL 237
+CLS L+ IC+F C +S A ++ L GC W L
Sbjct: 669 LCLSKWYLIYIICIF---NCLVSLLARNVITHSLCGCCVWIL 553
>TC222248 weakly similar to GB|AAC51925.1|2708305|AF016369 U4/U6 small
nuclear ribonucleoprotein hPrp4 {Homo sapiens;} ,
partial (7%)
Length = 747
Score = 27.7 bits (60), Expect = 5.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 249 CTYCCTFIS*TSCS 262
CT+CCTF S SC+
Sbjct: 257 CTFCCTFFSSNSCN 298
>AW397853 similar to SP|Q43070|GAE1_ UDP-glucose 4-epimerase (EC 5.1.3.2)
(Galactowaldenase) (UDP- galactose 4-epimerase). [Garden
pea], partial (16%)
Length = 429
Score = 26.9 bits (58), Expect = 9.9
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 224 LTMRRLIGCTTWRLVLLSSALLSTLCTYCCTFIS*TSCSVWSLFFWYFFK 273
LTM LI + +L + LS+LC C +S S S W+ F+W F K
Sbjct: 142 LTM--LIAHKELKYLLPTKFFLSSLCR--CINLSRISRSSWT*FYWNFLK 5
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.374 0.167 0.659
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,123,162
Number of Sequences: 63676
Number of extensions: 279894
Number of successful extensions: 6759
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5014
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 5368
length of query: 273
length of database: 12,639,632
effective HSP length: 96
effective length of query: 177
effective length of database: 6,526,736
effective search space: 1155232272
effective search space used: 1155232272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146752.5