BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.15 + phase: 0 /pseudo
(178 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229243 187 2e-48
BG726586 118 1e-27
AW185955 33 0.093
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 29 1.3
BU965518 28 1.8
TC203945 UP|EF12_DAUCA (P34823) Elongation factor 1-alpha (EF-1-... 28 1.8
TC230018 similar to UP|Q39941 (Q39941) HAHB-1, partial (24%) 28 1.8
BM093743 weakly similar to SP|Q18779|SQV7_ UDP-sugar transporter... 28 1.8
BM731380 28 2.3
AW234331 28 3.0
TC204246 weakly similar to UP|Q71RY3 (Q71RY3) Suppressor-of-whit... 28 3.0
BF596024 similar to GP|18958092|em SI:bZ71M17.2.1, partial (1%) 27 3.9
BE474925 homologue to PIR|T47897|T47 guanine nucleotide exchange... 27 5.1
TC232527 27 5.1
TC229057 27 5.1
TC230017 similar to UP|Q39941 (Q39941) HAHB-1, partial (20%) 27 5.1
TC206962 similar to UP|Q9FM17 (Q9FM17) Similarity to nuclear pro... 27 5.1
TC233081 27 5.1
TC206287 UP|HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A p... 27 6.7
BF425463 26 8.7
>TC229243
Length = 1189
Score = 187 bits (475), Expect = 2e-48
Identities = 101/156 (64%), Positives = 119/156 (75%), Gaps = 4/156 (2%)
Frame = +1
Query: 27 RSNGGKYFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVLKL 86
RSN KY FV+ASAL+VLAC +YLY+L+EK+ISLVYYSLLFDIFLV LLL PV K +
Sbjct: 1 RSNA-KYLFVHASALLVLACALYLYVLKEKAISLVYYSLLFDIFLVNLLLGKPVKKESVV 177
Query: 87 ILVILTKLSFSCRVCCDYASF----WSTA*DSLYEPVLLECVTPVTCYWTLSLIVREESE 142
I+ +F ++ Y S + D + +PVL+ECVTPVTCYWTLSLI+R ESE
Sbjct: 178 IMP-----AFGVQLETHYVSGKVIRYFVPIDKILKPVLIECVTPVTCYWTLSLIIRGESE 342
Query: 143 MVLVYKNLRPPVKMLVHVWKALCAATDNKGETCIHA 178
MVLV+KNLRPPVKMLVHVWKALCAATD+K ETC HA
Sbjct: 343 MVLVFKNLRPPVKMLVHVWKALCAATDSKEETCTHA 450
>BG726586
Length = 407
Score = 118 bits (296), Expect = 1e-27
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +1
Query: 113 DSLYEPVLLECVTPVTCYWTLSLIVREESEMVLVYKNLRPPVKMLVHVWKALCAATDNKG 172
D + +PVL+ECVTPVTCYWTLSLI+R ESEMVLV+KNLRPPVKML +VWKALCAATD+K
Sbjct: 184 DKILKPVLIECVTPVTCYWTLSLIIRGESEMVLVFKNLRPPVKMLAYVWKALCAATDSKE 363
Query: 173 ETCIHA 178
ETC HA
Sbjct: 364 ETCTHA 381
>AW185955
Length = 443
Score = 32.7 bits (73), Expect = 0.093
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 62 YYSLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVC 101
Y LL + + LLL + +I +L L+L++L +LS RVC
Sbjct: 442 YIILLLHVIKLLLLLIISIISLLNLLLLLLLELSLFLRVC 323
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 28.9 bits (63), Expect = 1.3
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = -1
Query: 42 IVLACGIYLYLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVLKLILVILTKL 94
+ L C YL+ + L+ LLF + L+ LLL L ++ +L L+L+ L L
Sbjct: 184 LTLQCHAYLHQ*SQGHFPLLLLLLLFLLLLLLLLLLLLLLLLLLLLLLFLLLL 26
>BU965518
Length = 445
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -1
Query: 33 YFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIF 70
+F +++S+L ACG L+ L ++SI ++Y L F+ +
Sbjct: 346 FFLLFSSSLN--ACGENLFKLGQRSIPQIFYELQFNFY 239
>TC203945 UP|EF12_DAUCA (P34823) Elongation factor 1-alpha (EF-1-alpha),
partial (28%)
Length = 384
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 129 CYWTLSLIVREESEMVLVYKNLRPP 153
C +L L VREE ++L Y +LRPP
Sbjct: 70 CSTSLRLSVREELPLILHYGSLRPP 144
>TC230018 similar to UP|Q39941 (Q39941) HAHB-1, partial (24%)
Length = 725
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (50%)
Frame = -3
Query: 64 SLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVCCDYASFW 108
S L L+ LL+ P + L+LI V ++ S RVC SFW
Sbjct: 438 SKLISELLLLPLLQEPSVSFLRLITVPVSLQSLLFRVCNSACSFW 304
>BM093743 weakly similar to SP|Q18779|SQV7_ UDP-sugar transporter sqv-7
(Squashed vulva protein 7). {Caenorhabditis elegans},
partial (10%)
Length = 437
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 56 KSISLVYYSLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCR 99
+ I L+ +S+L +FLV+LLL + +L+++ L FSCR
Sbjct: 243 RDIHLLLFSVLA*LFLVRLLLEHGI-----YLLMLMAMLLFSCR 359
>BM731380
Length = 433
Score = 28.1 bits (61), Expect = 2.3
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 41 LIVLACGIYLYLLEEKSISLVYYSLLFDI-FLVKLLLRLPVIKVLKLILVIL 91
L+VL G+YL L+ + L+ LL + L+ LL+ L +++VL L+LV+L
Sbjct: 257 LLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLL 412
>AW234331
Length = 370
Score = 27.7 bits (60), Expect = 3.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -1
Query: 33 YFFVYASALIVLACGIYLYLLEEKSISL----VYYSLLFDIFLVKLLLRLPVIKVLKLIL 88
Y ++ + +L+ GI + ++EK I+ + L+FD+F V L+ L L+LIL
Sbjct: 235 YDVLFPRVIYILSDGISMKPIKEKDINFDSFDKFVELVFDLFSVCTLVMLEKPSPLRLIL 56
>TC204246 weakly similar to UP|Q71RY3 (Q71RY3)
Suppressor-of-white-apricot-like protein 2, partial (9%)
Length = 1279
Score = 27.7 bits (60), Expect = 3.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 51 YLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVC 101
YLLE + L+ L +KLLLRL + + +L L++ S CR C
Sbjct: 772 YLLEPLLLGLLLRLYLLGGERLKLLLRLRLWCLYRLNLLVSASFSCLCRSC 620
>BF596024 similar to GP|18958092|em SI:bZ71M17.2.1, partial (1%)
Length = 367
Score = 27.3 bits (59), Expect = 3.9
Identities = 13/51 (25%), Positives = 25/51 (48%)
Frame = -1
Query: 14 YPSEDVDIHHIVLRSNGGKYFFVYASALIVLACGIYLYLLEEKSISLVYYS 64
YPS + + V S +FF + + L C +YLY+ ++ +V ++
Sbjct: 148 YPSLSLSV--CVRLSESASFFFCFGCSYSSLCCYVYLYIFCATTLEIVSFT 2
>BE474925 homologue to PIR|T47897|T47 guanine nucleotide exchange
factor-like protein - Arabidopsis thaliana, partial
(1%)
Length = 122
Score = 26.9 bits (58), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 49 YLYLLEEKSISLVYYSLLFDIFLV 72
YLY E S+S YS++FDI L+
Sbjct: 10 YLYGKEYLSLSYFLYSIMFDILLI 81
>TC232527
Length = 506
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 48 IYLYLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVL 84
+ L L K S Y+ L F FLV + + LP+IKV+
Sbjct: 385 LLLPLFSCKINSSSYFILYFFFFLVHIPITLPIIKVI 495
>TC229057
Length = 536
Score = 26.9 bits (58), Expect = 5.1
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Frame = -2
Query: 115 LYEPVLLECVTPVTCY----WTLSLIVREESEMVLVYKNLR 151
+++P +L C+ + Y TL ++RE S +L+Y LR
Sbjct: 151 MFDP*ILSCLVGIILYSYFLGTLK*LIRESSVNILIYWQLR 29
>TC230017 similar to UP|Q39941 (Q39941) HAHB-1, partial (20%)
Length = 633
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 65 LLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVCCDYASFW 108
L+ ++ L+ LL + L+LI V ++ S RVC SFW
Sbjct: 282 LISELLLLPLLQEP*SVSFLRLITVPVSLQSLLFRVCNSVCSFW 151
>TC206962 similar to UP|Q9FM17 (Q9FM17) Similarity to nuclear protein ZAP,
partial (21%)
Length = 718
Score = 26.9 bits (58), Expect = 5.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 103 DYASFWSTA*DSLYEPVLLECV--TPVTC 129
D+A FW+TA S YE +LE PV C
Sbjct: 186 DFAQFWATAKRSGYEVYILEATYKDPVGC 272
>TC233081
Length = 642
Score = 26.9 bits (58), Expect = 5.1
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 9/59 (15%)
Frame = -1
Query: 42 IVLACGIYLYLLEEKSISL--VYYSLLFDIFLVKLLLRLPVI-------KVLKLILVIL 91
++ C + L E SI L V++ +F IFL+K L +P++ +VL + ++L
Sbjct: 573 VIRTCNVKLVGSHEHSIGLFRVHFGRIFYIFLIKGLR*VPIVCCLPTPQEVLSFVYILL 397
>TC206287 UP|HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A protein),
complete
Length = 1058
Score = 26.6 bits (57), Expect = 6.7
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = -1
Query: 82 KVLKLILVILTKLSFSCRVCCDYASF 107
KV +I + LTK+SF+C +C + +
Sbjct: 215 KVKGMIWMTLTKISFTCLLCSSFRDY 138
>BF425463
Length = 421
Score = 26.2 bits (56), Expect = 8.7
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -2
Query: 34 FFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVLKLILVI 90
F + LI + I L L E+ ++SLL + L+ LLLR + L LILVI
Sbjct: 321 FLAVLAPLITIV*VINLALCHERES---WFSLLLLVLLLLLLLRF*LFLSLVLILVI 160
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.144 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,169,295
Number of Sequences: 63676
Number of extensions: 163965
Number of successful extensions: 1320
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of query: 178
length of database: 12,639,632
effective HSP length: 91
effective length of query: 87
effective length of database: 6,845,116
effective search space: 595525092
effective search space used: 595525092
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146752.15