BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.14 - phase: 2 /pseudo
(1086 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 231 1e-60
CO982349 129 7e-30
AW757033 128 1e-29
TC231922 110 3e-24
TC221865 108 2e-23
TC213061 101 2e-21
CO984521 95 2e-19
CO986021 94 3e-19
TC222557 68 6e-19
CA851073 93 7e-19
TC233392 91 3e-18
TC231841 89 1e-17
CO979823 86 9e-17
TC233956 85 2e-16
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 62 2e-16
BM527030 85 2e-16
TC211809 73 5e-16
BI972659 83 8e-16
BE660043 66 6e-13
AW423846 72 2e-12
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 231 bits (590), Expect = 1e-60
Identities = 117/229 (51%), Positives = 153/229 (66%), Gaps = 1/229 (0%)
Frame = +1
Query: 551 LDGILIANELVDDAKRNNKELLMFKVDFEKAYDSVDWRYLDEVMAKMNFPRLWRSWIMEC 610
L LIANE++D+AKR+NK L+FKVD+EKAYDSV W +L +M +M+F W WI EC
Sbjct: 1 LHSALIANEVIDEAKRSNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEEC 180
Query: 611 VTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEGLNVMMSTVGSNGLFAPYTV 670
V +A+ SVLVNG PT EF +RGLRQGDPL+PFLF + AEGLN +M L+ PY V
Sbjct: 181 VKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYLV 360
Query: 671 GAE-VPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDVSGLKVNFHKSMFFGVNIN 729
GA VP+S+ LQ+ADDT+ G + NV A+K +L FE VS L++NF KS F +
Sbjct: 361 GANGVPISI--LQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVFGVT 534
Query: 730 ESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLVERIRRRLS 778
+ W EAA +HC PFIYLG+PIG + R+ H W ++ + R+LS
Sbjct: 535 DQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLS 681
>CO982349
Length = 795
Score = 129 bits (324), Expect = 7e-30
Identities = 76/196 (38%), Positives = 111/196 (55%), Gaps = 7/196 (3%)
Frame = +3
Query: 606 WIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEGLNVMMSTVGSNGLF 665
WI C+ +A+ S+LVN P +EF +RGLRQGDPL+P LF + AEGL +M F
Sbjct: 69 WIRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRF 248
Query: 666 APYTVGA-EVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDVSGLKVNFHKSMFF 724
+ VG + PVS+ LQ+ADDT+ + N++ +KT+L FE SGLK+NF +S F
Sbjct: 249 NSFLVGKNKEPVSI--LQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESRFG 422
Query: 725 GVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLVERIRRRLSG----- 779
+ + W EAA ++C +PF YLG+PI +PR P++ + +L+
Sbjct: 423 AIWKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRH 602
Query: 780 -VLEDRESLWNVVLCA 794
L R +L N +L A
Sbjct: 603 ISLGGRVTLINAILTA 650
>AW757033
Length = 441
Score = 128 bits (322), Expect = 1e-29
Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Frame = -2
Query: 625 TDEFHFERGLRQGDPLSPFLFLLAAEGLNVMMSTVGSNGLFAPYTVGA-EVPVSVSHLQF 683
T EF RGLRQGDPL+P LF +AAEGL +M + + + VG + PVS+ LQ+
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSI--LQY 267
Query: 684 ADDTLLIGVKSWANVRAMKTVLLLFEDVSGLKVNFHKSMFFGVNINESWLHEAAVVMHCR 743
ADDT+ G + NVR +KT+L FE SGLK+NF KS F +++ + W EAA M+C
Sbjct: 266 ADDTIFFGEATMENVRVIKTILRGFELASGLKINFAKSRFGAISVPD*WRKEAAEFMNCS 87
Query: 744 HGRIPFIYLGLPIGGDPRKLHFWHPLV 770
+PF YLG+PIG +PR+ W P++
Sbjct: 86 LLSLPFSYLGIPIGANPRRRETWDPII 6
>TC231922
Length = 803
Score = 110 bits (275), Expect = 3e-24
Identities = 67/240 (27%), Positives = 114/240 (46%), Gaps = 3/240 (1%)
Frame = -3
Query: 813 WWRQLNQIRCGVGLAENAWLVDNIVRKVGDGSTTLFWEDPWLLN-VPLAVSFSRLFELAE 871
WW+ L ++ + + N+V +VG G FW+D WL L +++L+ ++
Sbjct: 771 WWKDLRRL---YNQPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISR 601
Query: 872 NKGVSVREMFLLGWGADGGAWRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLH 931
+++ +M A ++WRRRLF +E + + + +S +Q D W+
Sbjct: 600 Q*NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKAD 421
Query: 932 SSQLYTVQSAYSYL-TAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKR 990
SS +Y+ +SAY L ++ + + LW +P + +F WRLFL+RL T+ NL +R
Sbjct: 420 SSGVYSTKSAYRLLMPSISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRR 241
Query: 991 NVLEATNVSSGALCG-KEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFC 1049
++ LCG + EE HLFF C LW W+ + + +H QFC
Sbjct: 240 SI--PIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADPASHFIQFC 67
>TC221865
Length = 1045
Score = 108 bits (269), Expect = 2e-23
Identities = 82/266 (30%), Positives = 125/266 (46%), Gaps = 9/266 (3%)
Frame = -3
Query: 829 NAWLVDNIVRKVGDGSTTLFWEDPWL-LNVPLAVSFSRLFELAENKGVSVREMFLLGWGA 887
N L + IV KVG G FWED + L + R+++++ + ++++
Sbjct: 956 NRVLQNEIVWKVGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETT 777
Query: 888 DGGAWRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYL-- 945
++WRR LF E + + +S F + L+D WVW+ + Y+ +SAY +
Sbjct: 776 WEWKFQWRRPLFDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQH 597
Query: 946 TAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALC- 1004
A +N F+ +W +P K IF RL +RL TK+NLR+R V +G LC
Sbjct: 596 EAAKANTDPAFEE-IWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQV-----QLNGTLCL 435
Query: 1005 ---GKEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTH--ANQFCALGGFSKNYM 1059
EEE HLFF C +W +W+ F N H + F LG N
Sbjct: 434 FCRNYEEEASHLFFSCTKTQPVWWESLSWINTSGAFSANPRHHFLQHSFGLLGLKQYNR* 255
Query: 1060 KAFTIIWISVLFTIWKDRNRRIFQNQ 1085
K + W+++ FTIW+ RNR IF N+
Sbjct: 254 KCW---WVALTFTIWQHRNRTIFSNE 186
>TC213061
Length = 823
Score = 101 bits (251), Expect = 2e-21
Identities = 63/197 (31%), Positives = 95/197 (47%), Gaps = 4/197 (2%)
Frame = +2
Query: 892 WRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLT--AVD 949
++WRR LF E E++ + + +++D+ D+WVW SS Y +SAY + +
Sbjct: 32 FQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAYRVIREGIPE 211
Query: 950 SNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEE 1009
EF + LW VP+KV +F WRL + L T+DNLR++ V E +E
Sbjct: 212 EEQDREF-KELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRV-ELHEYVCPLCRSMDES 385
Query: 1010 RDHLFFQCDYYGRLWLLISNWLGFVTVF--HDNLYTHANQFCALGGFSKNYMKAFTIIWI 1067
HLFF C +W +W+ V F H + H + G N K + W+
Sbjct: 386 ASHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQGNRWKWW---WL 556
Query: 1068 SVLFTIWKDRNRRIFQN 1084
++ +TIWK RN IF N
Sbjct: 557 ALTWTIWKHRNDIIFSN 607
>CO984521
Length = 716
Score = 94.7 bits (234), Expect = 2e-19
Identities = 63/186 (33%), Positives = 87/186 (45%), Gaps = 3/186 (1%)
Frame = -2
Query: 902 EEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNITAEFD---R 958
E ++ + +L F ++ +LSD+W W S Y+ +SAY L V + E D +
Sbjct: 712 EIDMAVAFLQQLEGFTIRPELSDQWKWAAEPSGCYSTKSAYKALHHV--TVGEEQDGKFK 539
Query: 959 FLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEERDHLFFQCD 1018
LW VPLKV IF WRL ++L TK NLRK+ V E EE HLFF C
Sbjct: 538 ELWKLRVPLKVAIFAWRLIQDKLPTKANLRKKRV-ELQEYLCPLCRSVEETASHLFFHCS 362
Query: 1019 YYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRN 1078
LW +W+ + VF H +Q G K + W ++ ++IWK RN
Sbjct: 361 KVSPLWWESQSWVNMMGVFPYQPDQHFSQH-IFGASVGLQGKRWQWWWFALTYSIWKHRN 185
Query: 1079 RRIFQN 1084
IF N
Sbjct: 184 SIIFSN 167
>CO986021
Length = 900
Score = 94.0 bits (232), Expect = 3e-19
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Frame = -1
Query: 892 WRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSN 951
++WRR LF E E + +S + L D +W+ + +Y+ +SAY L + +N
Sbjct: 879 FKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLL--LPNN 706
Query: 952 ITAEFD---RFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGK-E 1007
+ + LW +P + +F WRLF +RL+ + NL +R+V A LCG +
Sbjct: 705 RPGQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHV--ALQDIMCPLCGNHQ 532
Query: 1008 EERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTIIWI 1067
EE HLFF C LW NW + F D+ H QF G +N+ + + WI
Sbjct: 531 EEAGHLFFHCRMTIGLWWESMNWTRTLGAFLDDPAAHFIQFSDGFGAQRNHNRR-CLWWI 355
Query: 1068 SVLFTIWKDRNRRIFQ 1083
++ TIW+ RN +F+
Sbjct: 354 ALTSTIWQHRNSLLFK 307
>TC222557
Length = 1002
Score = 68.2 bits (165), Expect(2) = 6e-19
Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Frame = +1
Query: 960 LWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEERDHLFFQCDY 1019
LW +PLK F WRL R+ TK NL +R V + N+ +EEE HLFF C
Sbjct: 439 LWQLKIPLKATTFAWRLIKERIPTKGNLWRRRV-QLNNLMCPFCNRQEEEASHLFFNCPR 615
Query: 1020 YGRLWLLISNWLGFVTVF----HDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWK 1075
LW W V VF N H L K+ + W+++ ++IW+
Sbjct: 616 ILPLWWESLAWTKTVGVFSPIPRQNYMQH-----TLISKGKHLQARWKCWWVALTWSIWR 780
Query: 1076 DRNRRIFQNQ 1085
RNR +F N+
Sbjct: 781 HRNRIVFLNK 810
Score = 45.4 bits (106), Expect(2) = 6e-19
Identities = 32/111 (28%), Positives = 54/111 (47%), Gaps = 4/111 (3%)
Frame = +3
Query: 839 KVGDGSTTLFWEDPWLL-NVPLAVSFSRLFELAENKGVSVREMFLLGW-GADGGAWR--W 894
KVG G FWED WL+ PL + RL+ ++ + + + ++G+ A+ W+ W
Sbjct: 72 KVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQ---QKLILVMGFHSANVWEWKLEW 242
Query: 895 RRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYL 945
RR LF E + + +S + D WVW+ + ++ +SAY L
Sbjct: 243 RRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAYRML 395
>CA851073
Length = 633
Score = 92.8 bits (229), Expect = 7e-19
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Frame = +1
Query: 918 LQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNIT-AEFDRFLWLKAVPLKVNIFVWRL 976
+Q+ L D VW+ +Y+ +SAY L + +++ A + +W +P + +F WRL
Sbjct: 10 IQSHLQDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSWRL 189
Query: 977 FLNRLATKDNLRKRNVLEATNVSSGALCG-KEEERDHLFFQCDYYGRLWLLISNWLGFVT 1035
+RL T+ NL +RNV + + LCG ++EE DHLFF C LW W V
Sbjct: 190 IKDRLPTRHNLLRRNV--SIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQIVG 363
Query: 1036 VFHDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQ 1083
+ +H QFC G +N+ + + WI++ +IWK RN IFQ
Sbjct: 364 PLSVSPASHFVQFCDGFGAGRNHTR-WCGWWIALTSSIWKHRNLLIFQ 504
>TC233392
Length = 1145
Score = 90.9 bits (224), Expect = 3e-18
Identities = 57/176 (32%), Positives = 88/176 (49%), Gaps = 5/176 (2%)
Frame = -1
Query: 914 SNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTA-VDSNITAEFDRFLWLKAVPLKVNIF 972
S+ +Q + D WVW+ ++LY+ +SAY L ++ + LW +P K +IF
Sbjct: 686 SHAQIQQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIF 507
Query: 973 VWRLFLNRLATKDNLRKRNVLEATNVSSGALCG----KEEERDHLFFQCDYYGRLWLLIS 1028
WRL +RL TK NL +R V V +LC +EE+ H+F +C+ LW
Sbjct: 506 AWRLIRDRLPTKSNLHRRQV-----VLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQ 342
Query: 1029 NWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQN 1084
W+ + V N H Q SK Y + + WI++ +++WK RN+ IFQN
Sbjct: 341 TWVRSLGVSPINKRQHFLQHVHGTPGSKRYNR-WKTWWIALTWSLWKHRNQVIFQN 177
>TC231841
Length = 791
Score = 88.6 bits (218), Expect = 1e-17
Identities = 54/171 (31%), Positives = 81/171 (46%), Gaps = 4/171 (2%)
Frame = +3
Query: 918 LQADLSDRWVWRLHSSQLYTVQSAYSYLTA--VDSNITAEFDRFLWLKAVPLKVNIFVWR 975
+Q D+WVW+ S YT +SAY L + F+ LW +P K+ IF WR
Sbjct: 45 IQPQQGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEE-LWKLKLPSKITIFAWR 221
Query: 976 LFLNRLATKDNLRKRNVLEATNVSSGALCGKEEERDHLFFQCDYYGRLWLLISNWLGFVT 1035
L +RL T+ NLR++ + E + EE HLFF C +W +W+ +
Sbjct: 222 LIRDRLPTRSNLRRKQI-EVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLG 398
Query: 1036 VFHDNLYTHANQ--FCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQN 1084
VF ++ H Q + G + K + W+++ +TIWK RN IF N
Sbjct: 399 VFPNHPRQHFLQHIYGVTAGMRASRWKWW---WLALTWTIWKQRNNMIFSN 542
>CO979823
Length = 853
Score = 85.9 bits (211), Expect = 9e-17
Identities = 56/195 (28%), Positives = 85/195 (42%), Gaps = 4/195 (2%)
Frame = -2
Query: 894 WRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNIT 953
WRR E + + + ++ + D+W+W+ Y+ +S Y L +
Sbjct: 792 WRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEEI 613
Query: 954 AEFD-RFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGK-EEERD 1011
+ D +W +P K +F WRL +RL TK NLR+R V+ V LC EE
Sbjct: 612 QDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVMVQDMVC--PLCNNIEEGAA 439
Query: 1012 HLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCA--LGGFSKNYMKAFTIIWISV 1069
HLFF C LW +W+ T H Q+ G K + WI++
Sbjct: 438 HLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHFLQYGTDIADGLKSKRWKCW---WIAL 268
Query: 1070 LFTIWKDRNRRIFQN 1084
+TIW+ RN+ +FQN
Sbjct: 267 TWTIWQHRNKVVFQN 223
>TC233956
Length = 757
Score = 85.1 bits (209), Expect = 2e-16
Identities = 62/175 (35%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Frame = +2
Query: 918 LQADLSDRWVWRLHSSQLYTVQSAYSYLTAV--DSNITAEFDRFLWLKAVPLKVNIFVWR 975
L + +D WVWR S+ + + +SAY + + D F + LW VP K FVWR
Sbjct: 41 LNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQHLGFKK-LWEIKVPPKALSFVWR 217
Query: 976 LFLNRLATKDNLRKRNVLEATNVSSGALC-GKEEERDHLFFQCDYYGRLWLLISNWLGFV 1034
L +RL TKDNL KR + ++ C + E HLFF C LW +W+
Sbjct: 218 LLWDRLPTKDNLIKRQIQVEDDLC--PFCHSQSETASHLFFTCGKIMPLWWEFLSWVKED 391
Query: 1035 TVFH----DNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQNQ 1085
VFH DN H + SK T+ WI+V +IW+ RN IFQNQ
Sbjct: 392 KVFHCRPMDNFLQHYS-----SAASKVSNTRRTMWWIAVTNSIWRLRNDIIFQNQ 541
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 62.0 bits (149), Expect(2) = 2e-16
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = -3
Query: 572 LMFKVDFEKAYDSVDWRYLDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFE 631
L K+D KA+D++D +L V+ K + + +WI + +A S+ VNG P F +
Sbjct: 765 LALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIRVILLSAKLSISVNGEPVGFFSCQ 586
Query: 632 RGLRQGDPLSPFLF 645
RG+RQGDPLSP L+
Sbjct: 585 RGVRQGDPLSPSLY 544
Score = 43.1 bits (100), Expect(2) = 2e-16
Identities = 27/89 (30%), Positives = 43/89 (47%), Gaps = 1/89 (1%)
Frame = -2
Query: 679 SHLQFADDTLLIGVKSWANVRAMKTVLLLFEDVSGLKVNFHKSMFFGVNINESWLHEAAV 738
SH+ ADD ++ + NV + L++D G ++ HKS F +I L +
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSIPGQRLRVISD 272
Query: 739 VMHCRHGRIPFIYLGLPI-GGDPRKLHFW 766
++ H IPF Y G+PI G P + H +
Sbjct: 271 LLQYFHSDIPFNYFGVPIFKGKPTRRHLY 185
>BM527030
Length = 421
Score = 84.7 bits (208), Expect = 2e-16
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Frame = +3
Query: 895 RRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNITA 954
RR F W +V + +L L AD D VW+L ++ Y V+ Y +L + +
Sbjct: 3 RRPWFQWG*AMVTSFMNKLEGASLVADRQDSLVWKLALTECYFVRDPYLFLIENTNPVYV 182
Query: 955 EFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALC-GKEEERDHL 1013
F R +W+ A+P V IF W+L ++L T+ NL+ RN+L C GKEE+ HL
Sbjct: 183 LFYRSIWMLAIPHNVAIFEWKLSKDKLPTRKNLQCRNILLEEQHQLCPFCSGKEEDSSHL 362
Query: 1014 FFQCDYYGRLWLLISNWLG 1032
F C + ++W W+G
Sbjct: 363 IFTCSFSYQIWQNCYKWIG 419
>TC211809
Length = 895
Score = 72.8 bits (177), Expect(2) = 5e-16
Identities = 55/159 (34%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Frame = +2
Query: 936 YTVQSAYSYLTAVDSNITAEF--DRF---LWLKAVPLKVNIFVWRLFLNRLATKDNLRKR 990
Y+ +SAY L T EF DR LW +P K +F WRL +RL T NLR R
Sbjct: 206 YSTKSAYRLLMEA----TGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLRVR 373
Query: 991 NVLEATNVSSGALC-GKEEERDHLFFQCDYYGRLWLLISNWLGFVTVF----HDNLYTHA 1045
V N S LC EE+ HLFF C LW +W+ + F D+ H
Sbjct: 374 QV--ELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFLQHD 547
Query: 1046 NQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQN 1084
N+ + GG K +W+++ + IWK RN +F N
Sbjct: 548 NR--SAGGVXARRWKC---LWVALTWVIWKHRNGVVFHN 649
Score = 30.8 bits (68), Expect(2) = 5e-16
Identities = 14/39 (35%), Positives = 19/39 (47%)
Frame = +1
Query: 894 WRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHS 932
WRR LF E + E + L+ + D D WVW+ S
Sbjct: 79 WRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWVWKADS 195
>BI972659
Length = 453
Score = 82.8 bits (203), Expect = 8e-16
Identities = 45/120 (37%), Positives = 65/120 (53%)
Frame = +1
Query: 690 IGVKSWANVRAMKTVLLLFEDVSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPF 749
+G SW N+ +K++L FE VSGL++N+ KS F V +W H+AA +++CR IPF
Sbjct: 1 VGEASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHDAAQLLNCRQLDIPF 180
Query: 750 IYLGLPIGGDPRKLHFWHPLVERIRRRLSGVLEDRESLWNVVLCAKYGEVGGRVQFSEGV 809
YLG+PI W PL+ + + +L S WN KY +GGRV + V
Sbjct: 181 HYLGMPIAVKASSRMVWEPLINKFKAKL--------SKWN----QKYLSMGGRVTLIKSV 324
>BE660043
Length = 714
Score = 65.9 bits (159), Expect(2) = 6e-13
Identities = 41/108 (37%), Positives = 58/108 (52%), Gaps = 3/108 (2%)
Frame = -2
Query: 913 LSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYL--TAVDSNITAEFDRFLWLKAVPLKVN 970
+S+ LQ +D WVW+ S+ Y+ ++AY L + + N+ F + LW +P K +
Sbjct: 659 ISHTALQQHAADSWVWKPESNGYYSSRNAYILLQGNSEEGNMDDIF-KDLWKLKIPAKAS 483
Query: 971 IFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCG-KEEERDHLFFQC 1017
IF RL +RL TK N+RKR + N S C KEE HLFF C
Sbjct: 482 IFAGRLIRDRLPTKSNMRKRQI--DINDSLCPFCSIKEETASHLFFDC 345
Score = 27.3 bits (59), Expect(2) = 6e-13
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -1
Query: 1024 WLLISNWLGFVTVFHDNLYTHANQFC--ALGGFSKNYMKAFTIIWISVLFTIWKDRNRRI 1081
W +W+G + N H Q GG N K + W+++ ++IW+ RN+ I
Sbjct: 327 WWESLSWIGTSGAYPINPRLHFLQHNNGMKGGKKYNRWKCW---WVALNWSIWQHRNKII 157
Query: 1082 FQN 1084
F N
Sbjct: 156 FTN 148
>AW423846
Length = 385
Score = 71.6 bits (174), Expect = 2e-12
Identities = 41/121 (33%), Positives = 61/121 (49%)
Frame = +3
Query: 965 VPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEERDHLFFQCDYYGRLW 1024
VP K FVWRL +RL TK NL +R+V E +++ KEE+ HLFF C LW
Sbjct: 12 VPSKAAFFVWRLIRDRLPTKTNLHRRHV-EIHDLTCPFCKNKEEDAAHLFFTCSKIMPLW 188
Query: 1025 LLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRRIFQN 1084
+W F +N + H Q G +Y K + W S+ ++IW+ RN+ + +
Sbjct: 189 WASLSWTNTTAPFPENPHMHFLQQVLRNGKDTSYQK-WQCWWTSLTWSIWQHRNKIVXEE 365
Query: 1085 Q 1085
+
Sbjct: 366 E 368
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.347 0.155 0.542
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,028,942
Number of Sequences: 63676
Number of extensions: 939935
Number of successful extensions: 9907
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 7155
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 2292
Number of HSP's gapped (non-prelim): 7935
length of query: 1086
length of database: 12,639,632
effective HSP length: 107
effective length of query: 979
effective length of database: 5,826,300
effective search space: 5703947700
effective search space used: 5703947700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146752.14