BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146751.7 + phase: 0
(71 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216991 similar to UP|Q6NM15 (Q6NM15) At1g30475, partial (19%) 47 2e-06
TC216992 similar to UP|Q6NM15 (Q6NM15) At1g30475, partial (48%) 47 2e-06
BE440439 27 1.5
TC222881 similar to UP|Q9LMT6 (Q9LMT6) F2H15.16, partial (61%) 27 1.5
BM884906 weakly similar to GP|16323346|gb| AT5g11790/T22P22_180 ... 27 1.5
BI426566 similar to GP|21740607|emb OSJNBb0089K24.3 {Oryza sativ... 27 2.6
TC213910 weakly similar to UP|Q75M40 (Q75M40) Unknow protein, pa... 26 4.4
BM092745 25 5.8
TC225810 homologue to UP|Q9ATF4 (Q9ATF4) Ribosomal protein L33, ... 25 5.8
BE657291 25 7.5
TC232491 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {A... 25 7.5
TC225934 weakly similar to UP|Q8VWZ7 (Q8VWZ7) Geraniol 10-hydrox... 25 9.8
TC218569 similar to UP|Q93X14 (Q93X14) Amino acid permease AAP3,... 25 9.8
TC208591 similar to UP|Q6NM33 (Q6NM33) At5g19340, partial (31%) 25 9.8
TC203884 homologue to UP|RS1A_ARATH (P42798) 40S ribosomal prote... 25 9.8
BE475021 similar to GP|22535532|dbj P0431H09.21 {Oryza sativa (j... 25 9.8
>TC216991 similar to UP|Q6NM15 (Q6NM15) At1g30475, partial (19%)
Length = 811
Score = 47.0 bits (110), Expect = 2e-06
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 3 NARCSAEQTQTVLREAPTITHLPG 26
NARC AEQTQTV R+APTITH+PG
Sbjct: 434 NARCGAEQTQTVTRQAPTITHVPG 505
Score = 26.2 bits (56), Expect = 3.4
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = +3
Query: 21 ITHLPGITEEGGDRQEQMYALLEDFAVVFFNFL----IIYKYCRIYWST 65
+TH G+TEEG LL V F +L +IY Y R++WST
Sbjct: 669 MTHT-GMTEEGESIGHHRCMLL--LGVFFLLYLMISSLIYAYRRLHWST 806
>TC216992 similar to UP|Q6NM15 (Q6NM15) At1g30475, partial (48%)
Length = 915
Score = 47.0 bits (110), Expect = 2e-06
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +3
Query: 3 NARCSAEQTQTVLREAPTITHLPG 26
NARC AEQTQTV R+APTITH+PG
Sbjct: 402 NARCGAEQTQTVTRQAPTITHVPG 473
Score = 25.0 bits (53), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 42 LEDFAVVFFNFLIIYKYCRIYWST 65
LE FA + +IY Y R++WST
Sbjct: 699 LEYFAALSLISSLIYAYRRLHWST 770
>BE440439
Length = 466
Score = 27.3 bits (59), Expect = 1.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 49 FFNFLIIYKYCRIYWST 65
FF F +Y C++YW+T
Sbjct: 311 FFFFFTLYNLCKLYWAT 261
>TC222881 similar to UP|Q9LMT6 (Q9LMT6) F2H15.16, partial (61%)
Length = 739
Score = 27.3 bits (59), Expect = 1.5
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +1
Query: 5 RCSAEQTQTVL---REAPTITHLPGITEEGGDRQEQMYALLEDFAVV 48
R SA +T+ V+ +E PTIT T+ GG + LED+ V
Sbjct: 97 RLSALRTRIVVMAGQEGPTITRTKRKTQHGGSTLADLLQALEDYLPV 237
>BM884906 weakly similar to GP|16323346|gb| AT5g11790/T22P22_180 {Arabidopsis
thaliana}, partial (14%)
Length = 421
Score = 27.3 bits (59), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -3
Query: 53 LIIYKYCRIYWSTGDYSI 70
LI+YKYC Y++T Y I
Sbjct: 404 LILYKYCYTYFNTSKYKI 351
>BI426566 similar to GP|21740607|emb OSJNBb0089K24.3 {Oryza sativa
(japonica cultivar-group)}, partial (7%)
Length = 422
Score = 26.6 bits (57), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +3
Query: 27 ITEEGGDRQEQMYALLEDFAVVFFNFLIIYKYCRIYWST 65
+ +E GD QE+ LL L+++ YC+ WST
Sbjct: 42 LIQETGDGQERPNCLL----------LLLFSYCKTLWST 128
>TC213910 weakly similar to UP|Q75M40 (Q75M40) Unknow protein, partial (29%)
Length = 589
Score = 25.8 bits (55), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = +1
Query: 33 DRQEQMYALLEDFAVVFFNFLIIYKY 58
D Q + LL D V +NF +Y Y
Sbjct: 445 DHANQRFVLLSDSCVPLYNFSYVYNY 522
>BM092745
Length = 254
Score = 25.4 bits (54), Expect = 5.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 34 RQEQMYALLEDF---AVVFFNFLIIYKY 58
+QE + LEDF +VFF F I YKY
Sbjct: 48 QQEVVTHCLEDFHLYGIVFFEFNIRYKY 131
>TC225810 homologue to UP|Q9ATF4 (Q9ATF4) Ribosomal protein L33, complete
Length = 736
Score = 25.4 bits (54), Expect = 5.8
Identities = 8/28 (28%), Positives = 18/28 (63%)
Frame = +1
Query: 35 QEQMYALLEDFAVVFFNFLIIYKYCRIY 62
+ Q+ +DF +F+NF+++ + RI+
Sbjct: 496 KSQLICRHKDFCFIFYNFVVVCQLLRIF 579
>BE657291
Length = 791
Score = 25.0 bits (53), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -3
Query: 41 LLEDFAVVFFNFLIIYKYCRIYWSTGDYSI 70
+LE + FNF I K C I W T + +
Sbjct: 96 MLEKIFQLVFNFFISEKICSIIW*TNIFDL 7
>TC232491 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
thaliana;} , partial (19%)
Length = 423
Score = 25.0 bits (53), Expect = 7.5
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -1
Query: 49 FFNFLIIYKYCRIYWST 65
FF+FL + +YCRI ST
Sbjct: 288 FFSFLSMLQYCRILLST 238
>TC225934 weakly similar to UP|Q8VWZ7 (Q8VWZ7) Geraniol 10-hydroxylase ,
partial (9%)
Length = 440
Score = 24.6 bits (52), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 41 LLEDFAVVFFNFLIIYKYCRIYWS 64
L+ED +++FF+FL++ WS
Sbjct: 151 LVEDCSLIFFSFLLVVNEEHARWS 80
>TC218569 similar to UP|Q93X14 (Q93X14) Amino acid permease AAP3, partial
(51%)
Length = 1108
Score = 24.6 bits (52), Expect = 9.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 58 YCRIYWSTGDYSIR 71
+C+IY STG Y++R
Sbjct: 616 FCKIYISTGKYTVR 575
>TC208591 similar to UP|Q6NM33 (Q6NM33) At5g19340, partial (31%)
Length = 835
Score = 24.6 bits (52), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +2
Query: 45 FAVVFFNFLIIYKYCRIYWSTG 66
F V F FLI + +C++ W G
Sbjct: 77 FFVTLFFFLIFFLFCKLTW*CG 142
>TC203884 homologue to UP|RS1A_ARATH (P42798) 40S ribosomal protein S15a,
partial (75%)
Length = 545
Score = 24.6 bits (52), Expect = 9.8
Identities = 7/16 (43%), Positives = 13/16 (80%)
Frame = +1
Query: 48 VFFNFLIIYKYCRIYW 63
+ F+F+II+ Y ++YW
Sbjct: 466 LLFSFIIIFLYTKMYW 513
>BE475021 similar to GP|22535532|dbj P0431H09.21 {Oryza sativa (japonica
cultivar-group)}, partial (17%)
Length = 178
Score = 24.6 bits (52), Expect = 9.8
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = +1
Query: 33 DRQEQMYALLEDFAVVFFNFLIIYKYCRI 61
D Q + LL D V +NF +Y Y +
Sbjct: 7 DPANQRFVLLSDSCVPLYNFSYMYNYLMV 93
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,139,125
Number of Sequences: 63676
Number of extensions: 28446
Number of successful extensions: 309
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of query: 71
length of database: 12,639,632
effective HSP length: 47
effective length of query: 24
effective length of database: 9,646,860
effective search space: 231524640
effective search space used: 231524640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146751.7