TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146743.2 - phase: 0 
         (68 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s...    44  1e-05
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and...    36  0.004
TC221707 similar to UP|Q9LR84 (Q9LR84) F21B7.1, partial (16%)          25  5.9
TC206353                                                               25  7.7
CO979010                                                               25  7.7
TC220994 similar to GB|AAO39958.1|28372952|BT003730 At1g08850 {A...    25  7.7

>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
           (japonica cultivar-group)}, partial (7%)
          Length = 426

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +2

Query: 1   MTINKSQGQSLEHVGVYLPSPIFSH 25
           MTINKSQGQ L  VG+YLP+P+FSH
Sbjct: 350 MTINKSQGQLLASVGLYLPTPVFSH 424


>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
          recombination protein PIF1, mitochondrial precursor,
          partial (8%)
          Length = 596

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 24/64 (37%), Positives = 34/64 (52%)
 Frame = +2

Query: 1  MTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISRVTSRGGLKILINDDDDDNIDVASNVV 60
          M+I+K QG +LE V   L S  F  G +YVA+SRV S  GL +   +     +D   +  
Sbjct: 11 MSIHKCQGMTLERVHTDL-SRAFGCGMVYVALSRVRSLEGLHLSAFNRSKIKVDQRVSRF 187

Query: 61 YREV 64
          YR +
Sbjct: 188YRSL 199


>TC221707 similar to UP|Q9LR84 (Q9LR84) F21B7.1, partial (16%)
          Length = 739

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
 Frame = +1

Query: 6   SQGQSLEHVGVYLPS-PIFSHGQLYVAISRVTSRGGLK 42
           S+ + LEH+ VY PS  +F H +L  +++  T+  GL+
Sbjct: 139 SKAKPLEHILVYTPSGHVFQH-ELLASVALGTTDNGLR 249


>TC206353 
          Length = 883

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 7/24 (29%), Positives = 18/24 (74%)
 Frame = -2

Query: 4   NKSQGQSLEHVGVYLPSPIFSHGQ 27
           ++ +G++++ +G +LP P+ +H Q
Sbjct: 534 HQGRGKTVDPLGFHLPPPLLAHSQ 463


>CO979010 
          Length = 712

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 45  INDDDDDNIDVASNVVYREVFRN 67
           ++DDDDDN++   + + RE  R+
Sbjct: 410 VDDDDDDNMEAGFDEILREEKRS 342


>TC220994 similar to GB|AAO39958.1|28372952|BT003730 At1g08850 {Arabidopsis
           thaliana;} , partial (36%)
          Length = 471

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  VYLPSPIFSHGQLYVAISRVTSRGGLKILINDDD 49
           +Y+PS  F HGQ ++A     S  G++  ++DD+
Sbjct: 247 IYVPSSFFHHGQAHMA---PRSFFGVEDFLDDDN 339


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,297,789
Number of Sequences: 63676
Number of extensions: 21811
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)