TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146719.12 + phase: 0 /pseudo
         (758 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC213780                                                              178  7e-45
AW832310 weakly similar to GP|20804590|db P0421H07.9 {Oryza sati...   100  7e-41
TC219842 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Frag...   136  4e-32
BQ474042 weakly similar to GP|14517468|gb| AT3g49400/F2K15_260 {...   132  4e-31
TC219843 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Frag...   124  1e-28
TC205555                                                               36  0.073
BQ785413                                                               33  0.47
TC205556                                                               33  0.61
AW350284 similar to GP|22946224|gb| CG31868-PA {Drosophila melan...    32  1.4
TC209932                                                               32  1.4
BU765542                                                               31  1.8
TC228621 similar to UP|Q8RXD8 (Q8RXD8) WD repeat protein-like, p...    31  1.8
TC228620 weakly similar to UP|Q8RXD8 (Q8RXD8) WD repeat protein-...    31  1.8
TC207246 similar to UP|Q6YWF4 (Q6YWF4) Rhomboid family protein-l...    31  2.3
CA785241                                                               31  2.3
TC205552 similar to UP|PMM_ARATH (O80840) Probable phosphomannom...    30  4.0
TC218482                                                               30  5.2
BE822490 SP|P43565|RI1 Serine/threonine-protein kinase RIM15 (EC...    29  6.8
TC213463 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related p...    29  8.9

>TC213780 
          Length = 447

 Score =  178 bits (452), Expect = 7e-45
 Identities = 102/148 (68%), Positives = 110/148 (73%)
 Frame = +1

Query: 480 QEIHLNHVLA*LCPLEILSLQLFIALILIN*IECMKEGF*GQPLNTSGLVGYKLMFC*NL 539
           QE HL HVL   CPLEILSL LFI L+L N*IECMKEGF*GQ LNT GLV YK MF *NL
Sbjct: 4   QERHLIHVLVLQCPLEILSLLLFIVLMLRN*IECMKEGF*GQLLNTFGLVDYKWMFS*NL 183

Query: 540 PFHATLKNFPLFQRKN*LIGGPISYGL*TIINVSISLWFFGI*LQHYWLSRKTSQNM*NI 599
           PFH TLK  P+  +KN*LIG PISYGL*T INV ISLWF GI*LQHY  SR T  NM NI
Sbjct: 184 PFHVTLKEIPVMWKKN*LIGEPISYGL*TNINVMISLWFSGI*LQHYQHSRITI*NMQNI 363

Query: 600 *WSNGSHYHFWDLI*IFLLRKCYHVSFQ 627
              +GSH+ F++ I  FLL+K YH S Q
Sbjct: 364 YLLSGSHHLFYN*IWTFLLKKXYHSSLQ 447


>AW832310 weakly similar to GP|20804590|db P0421H07.9 {Oryza sativa (japonica
           cultivar-group)}, partial (10%)
          Length = 428

 Score = 99.8 bits (247), Expect(2) = 7e-41
 Identities = 54/82 (65%), Positives = 62/82 (74%)
 Frame = +3

Query: 71  ACLQLCIGMINQLFDQYHGLHLAWLPTQGA*LLFAPLMDTLKFIVRPFVIFVLNGLRLWT 130
           +C +LCIGMI+ L DQYHGL LAWL  QGA* LFA L D  +FIV  FVI VLNGLR WT
Sbjct: 180 SCRRLCIGMISLLPDQYHGLRLAWLQIQGA**LFATLKDM*RFIVHLFVITVLNGLRWWT 359

Query: 131 *LKGCMNISDVLSFKAQEGVIH 152
           *LK CM I +VLSF+ Q G++H
Sbjct: 360 *LKVCMTIFNVLSFEVQ-GLLH 422



 Score = 87.0 bits (214), Expect(2) = 7e-41
 Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
 Frame = +2

Query: 19 FPNALAWSHDNLIAAASGHFVTILRPDLPNG-PRGLIKVIPNEPLILGFIDRKACLQLCI 77
          FPNA+AWS DNLIA ASGH VTILRPDLP G PRG+IKV P+EPL +GF++RK  L  C+
Sbjct: 2  FPNAIAWSDDNLIAVASGHLVTILRPDLPIGAPRGVIKVSPSEPLPIGFVERKDLLSGCL 181


>TC219842 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Fragment),
           partial (3%)
          Length = 773

 Score =  136 bits (342), Expect = 4e-32
 Identities = 83/126 (65%), Positives = 88/126 (68%)
 Frame = +3

Query: 630 RTFLLDCCTCSI*FVDV*CWHSWMLIS*P**IANFKTWMGYVLSLKRK*LSG*KFF*AVK 689
           +TFL    T SI* VDV*C  SWMLI *     +FK+W   VL  K K LSG  FF* VK
Sbjct: 9   QTFLXXYYTXSI*SVDV*CXXSWMLIK*LEYTKSFKSWKR*VLPWKNKLLSGQNFF*TVK 188

Query: 690 ESFVKGTWVLVSLLSKLACSIKKQLHPCLAVGILLD*HRWNNGLL*IRKTYMTS*NPLHQ 749
           ES VKG W LV LLSKLAC I+KQ+   L VGILLD*HRWNNGLL*IR  YMTS*  LHQ
Sbjct: 189 ESSVKGLWALVFLLSKLACPIQKQISN-LVVGILLD*HRWNNGLL*IRNIYMTS*KSLHQ 365

Query: 750 KLLMRK 755
           KL MRK
Sbjct: 366 KLSMRK 383


>BQ474042 weakly similar to GP|14517468|gb| AT3g49400/F2K15_260 {Arabidopsis
           thaliana}, partial (5%)
          Length = 434

 Score =  132 bits (333), Expect = 4e-31
 Identities = 68/88 (77%), Positives = 76/88 (86%)
 Frame = +1

Query: 357 V*RFGWVTMTNCSNHQKLIQIPFYY*RRL*LQMLSQFQYFQ*LCMFSTPPRCF*P*AKFL 416
           V*RFGW+TMTNC NHQK I++P +Y*RRL*L MLSQF YFQ*  MF+T PRCF*P AKFL
Sbjct: 4   V*RFGWLTMTNC*NHQKWIKLPSHY*RRL*LSMLSQFLYFQ*PHMFNTLPRCF*PRAKFL 183

Query: 417 VPLRYGYVTYPLGNLISLAHMMHIIMLL 444
           V L+YGYVTY LGNLISLAH+MH+I LL
Sbjct: 184 VHLKYGYVTYLLGNLISLAHIMHMIWLL 267


>TC219843 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Fragment),
           partial (4%)
          Length = 758

 Score =  124 bits (312), Expect = 1e-28
 Identities = 73/112 (65%), Positives = 77/112 (68%)
 Frame = +2

Query: 645 DV*CWHSWMLIS*P**IANFKTWMGYVLSLKRK*LSG*KFF*AVKESFVKGTWVLVSLLS 704
           D *C  SWMLI        FK+W  YV   K K LSG KF  AVKES VKG W  V LLS
Sbjct: 2   DE*C*QSWMLIKXLEYTKTFKSWKRYVXPWKNKLLSGQKFXXAVKESSVKGLWXXVFLLS 181

Query: 705 KLACSIKKQLHPCLAVGILLD*HRWNNGLL*IRKTYMTS*NPLHQKLLMRKG 756
           +LAC I+KQ+ P L VGILLD*HRWNNGLL*IR  YMTS* PLHQKL M KG
Sbjct: 182 ELACPIQKQI-PNLVVGILLD*HRWNNGLL*IRDIYMTS*KPLHQKLSMSKG 334


>TC205555 
          Length = 552

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 165 TTTKKFPIRWGELHGSNEVIS*TMSVY 191
           TTT  +P RWG LHGS   I  T+S Y
Sbjct: 306 TTTTPYPTRWGRLHGSTSAIMMTLSPY 226


>BQ785413 
          Length = 376

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 165 TTTKKFPIRWGELHGSNEVI 184
           TTT  +P RWG LHGS  VI
Sbjct: 103 TTTTPYPTRWGRLHGSTSVI 44


>TC205556 
          Length = 648

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 162 IKATTTKKFPIRWGELHGSNEVI 184
           I  TTT  +P RWG LHGS   I
Sbjct: 397 ITTTTTTPYPTRWGRLHGSTSAI 329


>AW350284 similar to GP|22946224|gb| CG31868-PA {Drosophila melanogaster},
           partial (1%)
          Length = 767

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 165 TTTKKFPIRWGELHGSNEVI 184
           TTT  +P RWG LHGS   I
Sbjct: 61  TTTTPYPTRWGRLHGSTSAI 120


>TC209932 
          Length = 829

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 165 TTTKKFPIRWGELHGSNEVI 184
           TTT  +P RWG LHGS   I
Sbjct: 599 TTTTPYPTRWGRLHGSTSAI 540


>BU765542 
          Length = 427

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
 Frame = -1

Query: 154 IFPNRYTCIKATTTKKFPIRWGELHGSNEVIS*TMS-VYRSM 194
           I P        TTTK F  RWG+LH SN     T++ VYR +
Sbjct: 190 IMPETNILETTTTTKPFFTRWGQLHRSNNT*CSTVNHVYRQI 65


>TC228621 similar to UP|Q8RXD8 (Q8RXD8) WD repeat protein-like, partial (70%)
          Length = 1014

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 160  TCIKATTTKKFPIRWGELHGSNEVI 184
            T   ATTTK +P R G LHGS++ I
Sbjct: 1014 TLCSATTTKFYPTR*GRLHGSHDAI 940


>TC228620 weakly similar to UP|Q8RXD8 (Q8RXD8) WD repeat protein-like,
           partial (29%)
          Length = 622

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 160 TCIKATTTKKFPIRWGELHGSNEVI 184
           T   ATTTK +P R G LHGS++ I
Sbjct: 485 TLCSATTTKFYPTR*GRLHGSHDAI 411


>TC207246 similar to UP|Q6YWF4 (Q6YWF4) Rhomboid family protein-like, partial
           (15%)
          Length = 1053

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = +2

Query: 270 HLNFIPILIEMPLSVFLLLVGSLVKFLYGDFTNQIALLLRTEKSQLL*SLLVSFTHTI 327
           +++ IP+L+E+ L +  L++GS +KF       Q+ L     + QLL* LL S+  T+
Sbjct: 350 YIHQIPLLVELDLYLQ*LVLGSCIKF-KTSMLLQVMLQRTCSRRQLL*QLLFSY*ATL 520


>CA785241 
          Length = 435

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 3/26 (11%)
 Frame = -2

Query: 162 IKATT---TKKFPIRWGELHGSNEVI 184
           IK TT   +K FP +WG+LH SN+ I
Sbjct: 209 IKITTRRQSKPFPTKWGQLHESNDTI 132


>TC205552 similar to UP|PMM_ARATH (O80840) Probable phosphomannomutase  (PMM)
           , partial (25%)
          Length = 1033

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 11/16 (68%), Positives = 12/16 (74%)
 Frame = -3

Query: 165 TTTKKFPIRWGELHGS 180
           TTT  +P RWG LHGS
Sbjct: 686 TTTTPYPTRWGRLHGS 639


>TC218482 
          Length = 1214

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (49%)
 Frame = +1

Query: 628 GCRTFLLDCCTCSI*FVDV*CWHSWMLIS*P**IANFKTWMGYVLSLK 675
           G   F+L C  C + F+    W     I+ P  + N K W+ Y+LSLK
Sbjct: 169 GLSIFVLVCQKCIVFFLKSSEWIQMPKIANPNCVDNLKMWILYLLSLK 312


>BE822490 SP|P43565|RI1 Serine/threonine-protein kinase RIM15 (EC 2.7.1.-).
           [Baker's yeast] {Saccharomyces cerevisiae}, partial (0%)
          Length = 712

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 160 TCIKATTTKKFPIRWGELHGSNEVI 184
           T    TTT  +P  WG LHGS   I
Sbjct: 600 TTTTTTTTTPYPTXWGRLHGSTXXI 674


>TC213463 similar to UP|Q8H3D7 (Q8H3D7) Leaf senescence related protein-like,
           partial (10%)
          Length = 674

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/21 (61%), Positives = 15/21 (70%)
 Frame = -2

Query: 165 TTTKKFPIRWGELHGSNEVIS 185
           TTTK +PIR    HGS +VIS
Sbjct: 535 TTTKSYPIR*DRFHGSYKVIS 473


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.360    0.162    0.604 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,925,220
Number of Sequences: 63676
Number of extensions: 678089
Number of successful extensions: 6827
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 4039
length of query: 758
length of database: 12,639,632
effective HSP length: 104
effective length of query: 654
effective length of database: 6,017,328
effective search space: 3935332512
effective search space used: 3935332512
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 63 (28.9 bits)