BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146708.15 - phase: 2
(392 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 676 0.0
TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 576 e-164
TC227156 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 243 8e-65
TC214665 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 217 6e-57
TC218585 similar to UP|Q9M427 (Q9M427) Oligouridylate binding pr... 196 2e-50
TC214546 similar to PIR|T01932|T01932 RNA binding protein homolo... 137 8e-33
TC233564 similar to UP|Q9M427 (Q9M427) Oligouridylate binding pr... 118 1e-31
AW459126 125 3e-30
TC205913 weakly similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protei... 126 2e-29
TC227155 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (20%) 125 4e-29
TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding prot... 124 6e-29
TC225235 similar to GB|AAP37853.1|30725662|BT008494 At1g11650 {A... 124 7e-29
TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, p... 123 2e-28
TC205914 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, ... 116 2e-26
TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, ... 86 3e-17
BI971302 85 6e-17
TC225640 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 82 5e-16
CF809311 82 5e-16
TC225641 similar to GB|AAA18379.1|475719|ATU08467 RNA-binding pr... 77 1e-14
TC220737 weakly similar to UP|Q9FFU0 (Q9FFU0) Similarity to poly... 77 1e-14
>TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (92%)
Length = 1698
Score = 676 bits (1743), Expect = 0.0
Identities = 337/374 (90%), Positives = 348/374 (92%), Gaps = 9/374 (2%)
Frame = +1
Query: 28 CR--YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 85
CR YVGN+HTQVTEPLLQEVF+GTGPVEGCKL RK+KSSYGFIHYFDRRSAALAIL+LN
Sbjct: 304 CRSVYVGNIHTQVTEPLLQEVFSGTGPVEGCKLIRKDKSSYGFIHYFDRRSAALAILSLN 483
Query: 86 GRHLFGQPIKVNWAYASGQREDTS-------GHYNIFVGDLSPEVTDATLFACFSVYQSC 138
GRHLFGQPIKVNWAYASGQREDTS GHYNIFVGDLSPEVTDATLFACFSVY +C
Sbjct: 484 GRHLFGQPIKVNWAYASGQREDTSAFFF*FAGHYNIFVGDLSPEVTDATLFACFSVYPTC 663
Query: 139 SDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEK 198
SDARVMWDQKTGRSRGFGFVSFR+QQDAQSAINDLTGKWLGSRQIRCNWATKGAGG EEK
Sbjct: 664 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGTEEK 843
Query: 199 QNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGA 258
QNSD+KSVVELT GSS DGKE S++D PENNPQYTTVYVGNL EATQLDLH HFH+LGA
Sbjct: 844 QNSDAKSVVELTYGSS-DGKETSNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHSLGA 1020
Query: 259 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNP 318
GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQS LCGK IKCSWGSKPTP GTASNP
Sbjct: 1021GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPAGTASNP 1200
Query: 319 LPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGG 378
LPPPAAA LPGLSATD+L YERQLAMSKMGGVH ALMHPQ QHPLKQAAIGASQAIYDGG
Sbjct: 1201LPPPAAASLPGLSATDLLVYERQLAMSKMGGVH-ALMHPQGQHPLKQAAIGASQAIYDGG 1377
Query: 379 FQNVAAAQQMMYYQ 392
FQNVAAAQQMMYYQ
Sbjct: 1378FQNVAAAQQMMYYQ 1419
Score = 36.6 bits (83), Expect = 0.020
Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 1 LNQSQVEICLLVLIQVLAAVSSLSV-------RKCRYVGNVHTQVTEPLLQE 45
LN QVEICLLVLIQVLAAV L R C+ V Q+ L E
Sbjct: 254 LNHIQVEICLLVLIQVLAAVCMLGTSIHR*LSRFCKKFSRVLAQLKVVSLSE 409
>TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (93%)
Length = 1684
Score = 576 bits (1484), Expect(2) = e-164
Identities = 284/369 (76%), Positives = 314/369 (84%), Gaps = 4/369 (1%)
Frame = +2
Query: 28 CR--YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 85
CR YVGN+H QVT+ LLQE+F+ G +EGCKL RKEKSSYGF+ YFDR SAA AI+TLN
Sbjct: 341 CRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLN 520
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMW 145
GR++FGQPIKVNWAYAS QREDTSGH+NIFVGDLSPEVTDATL+ACFSVY SCSDARVMW
Sbjct: 521 GRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMW 700
Query: 146 DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKS 205
DQKTGRSRGFGFVSFR+QQDAQSAINDLTGKWLGSRQIRCNWATKGA +EKQ SDS+S
Sbjct: 701 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQTSDSRS 880
Query: 206 VVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVR 265
VVELTNGSSEDG+E +++D PE NPQYTTVYVGNL E T +DLH+HFH+L AG IE+VR
Sbjct: 881 VVELTNGSSEDGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLNAGTIEDVR 1060
Query: 266 VQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAA 325
VQRDKGFGFVRYSTHAEAALAIQMGNA+ L GK IKCSWGSKPTPPGTAS PLPPP +A
Sbjct: 1061VQRDKGFGFVRYSTHAEAALAIQMGNAR-ILFGKPIKCSWGSKPTPPGTASTPLPPPTSA 1237
Query: 326 PLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAA--IGASQAIYDGGFQNVA 383
+ G S + AYERQ+A+SKMGG H ALMH Q QH LKQ A +GA A YD FQNVA
Sbjct: 1238NVSGFSLASLAAYERQMALSKMGGAH-ALMHQQGQHALKQVAMGMGAPGAGYDARFQNVA 1414
Query: 384 AAQQMMYYQ 392
Q +MYYQ
Sbjct: 1415TTQHLMYYQ 1441
Score = 60.8 bits (146), Expect = 1e-09
Identities = 51/206 (24%), Positives = 90/206 (42%), Gaps = 4/206 (1%)
Frame = +2
Query: 107 DTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDA 166
D+S +++VG++ P+VTD+ L FS + +++ +K+ +GFV + + A
Sbjct: 329 DSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKS----SYGFVDYFDRSSA 496
Query: 167 QSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVP 226
AI L G+ + + I+ NWA + S E T+G
Sbjct: 497 AFAIVTLNGRNIFGQPIKVNWAY-------------ASSQREDTSG-------------- 595
Query: 227 ENNPQYTTVYVGNLGSEATQLDLHRHFHAL----GAGVIEEVRVQRDKGFGFVRYSTHAE 282
+ ++VG+L E T L+ F A V+ + + R +GFGFV + +
Sbjct: 596 -----HFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 760
Query: 283 AALAIQMGNAQSYLCGKIIKCSWGSK 308
A AI +L + I+C+W +K
Sbjct: 761 AQSAIN-DLTGKWLGSRQIRCNWATK 835
Score = 21.9 bits (45), Expect(2) = e-164
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +3
Query: 6 VEICLLVLIQVLAAV 20
VEIC L LI+V AAV
Sbjct: 306 VEICHLALIRVHAAV 350
>TC227156 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (31%)
Length = 543
Score = 243 bits (621), Expect = 8e-65
Identities = 124/134 (92%), Positives = 127/134 (94%), Gaps = 1/134 (0%)
Frame = +3
Query: 260 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPL 319
V+EEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQS LCGK IKCSWGSKPTPPGTASNPL
Sbjct: 3 VMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKPIKCSWGSKPTPPGTASNPL 182
Query: 320 PPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQ-AAIGASQAIYDGG 378
PPPAAA LPGLSATD+LAYERQLA+SKMGGVH ALMHPQ QH LKQ AAIGASQAIYDGG
Sbjct: 183 PPPAAASLPGLSATDLLAYERQLAISKMGGVH-ALMHPQGQHHLKQAAAIGASQAIYDGG 359
Query: 379 FQNVAAAQQMMYYQ 392
FQNVAAAQQMMYYQ
Sbjct: 360 FQNVAAAQQMMYYQ 401
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Frame = +3
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAIN-DLTGKWLGSRQIRCNWATK 190
VM + + R +GFGFV + + +A AI L + I+C+W +K
Sbjct: 3 VMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKPIKCSWGSK 149
Score = 30.0 bits (66), Expect = 1.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 66 YGFIHYFDRRSAALAILTLNGRHLF-GQPIKVNW 98
+GF+ Y AALAI N + L G+PIK +W
Sbjct: 39 FGFVRYSTHAEAALAIQMGNAQSLLCGKPIKCSW 140
>TC214665 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (29%)
Length = 787
Score = 217 bits (553), Expect = 6e-57
Identities = 112/166 (67%), Positives = 128/166 (76%), Gaps = 2/166 (1%)
Frame = +2
Query: 229 NPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 288
NPQYTTVYVGNL E T +DLH+HFH+L AG+IE+VRVQRDKGFGFVRYSTHAEAALAIQ
Sbjct: 5 NPQYTTVYVGNLAPEVTSVDLHQHFHSLNAGIIEDVRVQRDKGFGFVRYSTHAEAALAIQ 184
Query: 289 MGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMG 348
MGNA+ L GK IKCSWGSKPTP GTAS PL PP +A +PG S + AYERQ+A+SKMG
Sbjct: 185 MGNAR-ILFGKPIKCSWGSKPTPLGTASTPLLPP-SANVPGFSLAGLAAYERQMALSKMG 358
Query: 349 GVHAALMHPQAQHPLKQA--AIGASQAIYDGGFQNVAAAQQMMYYQ 392
G H LMH Q QH LK +GA+ +D FQNVA Q ++YYQ
Sbjct: 359 GAH-TLMHQQGQHALKHVDMGMGATGTGFDARFQNVATTQHLVYYQ 493
Score = 47.0 bits (110), Expect = 1e-05
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +2
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
++VG+L+PEVT L F +A ++ D + R +GFGFV + + +A AI
Sbjct: 23 VYVGNLAPEVTSVDLHQHFHSL----NAGIIEDVRVQRDKGFGFVRYSTHAEAALAIQMG 190
Query: 174 TGKWLGSRQIRCNWATK 190
+ L + I+C+W +K
Sbjct: 191 NARILFGKPIKCSWGSK 241
Score = 46.2 bits (108), Expect = 3e-05
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 30 YVGNVHTQVTEPLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 87
YVGN+ +VT L + F G +E ++ R + +GF+ Y AALAI N R
Sbjct: 26 YVGNLAPEVTSVDLHQHFHSLNAGIIEDVRVQRDK--GFGFVRYSTHAEAALAIQMGNAR 199
Query: 88 HLFGQPIKVNW 98
LFG+PIK +W
Sbjct: 200ILFGKPIKCSW 232
>TC218585 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
partial (27%)
Length = 902
Score = 196 bits (497), Expect = 2e-50
Identities = 108/187 (57%), Positives = 131/187 (69%), Gaps = 15/187 (8%)
Frame = +3
Query: 221 SSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTH 280
++ D P+NNP YTTVYVGNL + TQ +LH FHALGAGVIEEVRVQRDKGFGFVRY+TH
Sbjct: 21 NNEDAPDNNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTH 200
Query: 281 AEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPA--------AAPLPGLSA 332
EAALAIQM N + + GK +KCSWGSKPTPPGTASNPLPPPA A G S
Sbjct: 201 DEAALAIQMANGR-LVRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSP 377
Query: 333 TDILAYERQLAMSK---MGGVHAALMHPQAQHPLKQAAI----GASQAIYDGGFQNVAAA 385
++LAY+RQLA+S+ G L+ QH L A++ GASQA+YD G+ ++
Sbjct: 378 AELLAYQRQLALSQAAVSGLSGQTLLQMTGQHGLAPASMGVNSGASQAMYD-GYTGNSSR 554
Query: 386 QQMMYYQ 392
QQ+MYY+
Sbjct: 555 QQLMYYR 575
Score = 46.2 bits (108), Expect = 3e-05
Identities = 23/85 (27%), Positives = 44/85 (51%)
Frame = +3
Query: 106 EDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQD 165
++ + ++VG+L +VT A L F A V+ + + R +GFGFV + + +
Sbjct: 39 DNNPSYTTVYVGNLPHDVTQAELHCQFHAL----GAGVIEEVRVQRDKGFGFVRYNTHDE 206
Query: 166 AQSAINDLTGKWLGSRQIRCNWATK 190
A AI G+ + + ++C+W +K
Sbjct: 207 AALAIQMANGRLVRGKNMKCSWGSK 281
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/71 (36%), Positives = 38/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 87
YVGN+ VT+ L F G G +E ++ R + +GF+ Y AALAI NGR
Sbjct: 66 YVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDK--GFGFVRYNTHDEAALAIQMANGR 239
Query: 88 HLFGQPIKVNW 98
+ G+ +K +W
Sbjct: 240 LVRGKNMKCSW 272
>TC214546 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment) {Nicotiana tabacum;} , partial (68%)
Length = 1756
Score = 137 bits (345), Expect = 8e-33
Identities = 98/303 (32%), Positives = 161/303 (52%), Gaps = 11/303 (3%)
Frame = +3
Query: 18 AAVSSLSVRKCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFD 73
AA SS +R ++G++H + E L FA TG V K+ R +++ YGF+ ++
Sbjct: 465 AAASSDEIRTV-WLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYS 641
Query: 74 RRSAALAILTLNGRHL--FGQPIKVNWA-YASGQRE--DTSGHYNIFVGDLSPEVTDATL 128
R +A + NG + Q ++NWA +++G+R D + +IFVGDL+ +VTDA L
Sbjct: 642 RATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAML 821
Query: 129 FACFSV-YQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 187
F+ Y S A+V+ D TGRS+G+GFV F + + A+ ++ G + SR +R
Sbjct: 822 QETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGV 1001
Query: 188 AT-KGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQ 246
AT K G +++ +S + V L G S +G ++ E + TT++VG L S+ +
Sbjct: 1002ATPKKTYGFQQQYSSQA---VVLAGGHSANG-AVAQGSHSEGDINNTTIFVGGLDSDTSD 1169
Query: 247 LDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWG 306
DL + F L G + V++ KG GFV+++ A AIQ G + + + ++ SWG
Sbjct: 1170EDLRQPF--LQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQ-GLNGTVIGKQTVRLSWG 1340
Query: 307 SKP 309
P
Sbjct: 1341RSP 1349
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 4/87 (4%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHL 89
+VG + + ++ L++ F G V K+ GF+ + DR++A AI LNG +
Sbjct: 1137 FVGGLDSDTSDEDLRQPFLQFGEVVSVKI--PVGKGCGFVQFADRKNAEEAIQGLNGTVI 1310
Query: 90 FGQPIKVNWAYASGQR----EDTSGHY 112
Q ++++W + G + + GHY
Sbjct: 1311 GKQTVRLSWGRSPGNKHWRSDSNGGHY 1391
>TC233564 similar to UP|Q9M427 (Q9M427) Oligouridylate binding protein,
partial (33%)
Length = 566
Score = 118 bits (295), Expect(3) = 1e-31
Identities = 56/84 (66%), Positives = 65/84 (76%), Gaps = 2/84 (2%)
Frame = +2
Query: 28 CR--YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 85
CR YVGN+H VT+ LL EVF GP+ GCKL RKEKSSYGF+ Y DR SAALAI+TL+
Sbjct: 269 CRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLH 448
Query: 86 GRHLFGQPIKVNWAYASGQREDTS 109
GR L+GQ +KVNWAYA+ EDTS
Sbjct: 449 GRQLYGQALKVNWAYANSSMEDTS 520
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/82 (28%), Positives = 41/82 (49%)
Frame = +2
Query: 107 DTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDA 166
DTS +++VG++ VTD L F + +++ +K+ +GFV + + A
Sbjct: 257 DTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASA 424
Query: 167 QSAINDLTGKWLGSRQIRCNWA 188
AI L G+ L + ++ NWA
Sbjct: 425 ALAIMTLHGRQLYGQALKVNWA 490
Score = 33.9 bits (76), Expect = 0.13
Identities = 23/72 (31%), Positives = 35/72 (47%)
Frame = +2
Query: 234 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQ 293
+VYVGN+ T L F + G ++ + +GFV Y A AALAI + +
Sbjct: 275 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGR 454
Query: 294 SYLCGKIIKCSW 305
L G+ +K +W
Sbjct: 455 Q-LYGQALKVNW 487
Score = 32.3 bits (72), Expect(3) = 1e-31
Identities = 13/15 (86%), Positives = 14/15 (92%)
Frame = +1
Query: 139 SDARVMWDQKTGRSR 153
SDARVMWD KTGRS+
Sbjct: 520 SDARVMWDHKTGRSK 564
Score = 24.3 bits (51), Expect(3) = 1e-31
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = +3
Query: 5 QVEICLLVLIQVLAAV 20
QVE+CLLVLI++ A V
Sbjct: 231 QVEMCLLVLIRLHAVV 278
>AW459126
Length = 339
Score = 125 bits (314), Expect(2) = 3e-30
Identities = 60/91 (65%), Positives = 74/91 (80%)
Frame = +1
Query: 150 GRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVEL 209
GRSRGFGFVSFR+QQDAQSAINDLTGKWL SRQIR N ATK A +KQ+S+SK +++L
Sbjct: 7 GRSRGFGFVSFRNQQDAQSAINDLTGKWLESRQIRYN*ATKRASASNKKQSSNSKIIIKL 186
Query: 210 TNGSSEDGKEISSNDVPENNPQYTTVYVGNL 240
N SSE+ E ++N+ P+ NPQYTT+Y+ NL
Sbjct: 187 INKSSEESXETTNNNTPKKNPQYTTIYINNL 279
Score = 24.6 bits (52), Expect(2) = 3e-30
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 243 EATQLDLHRHFHAL 256
E T ++LH+HFH+L
Sbjct: 287 EITSINLHQHFHSL 328
>TC205913 weakly similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45,
partial (55%)
Length = 886
Score = 126 bits (316), Expect = 2e-29
Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 8/284 (2%)
Frame = +1
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILTLN 85
++G++ V E L + FA G V K+ R + YGF+ + SA + T N
Sbjct: 73 WIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTYN 252
Query: 86 GRHLFG--QPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCSDAR 142
G + G Q ++NWA D+ ++IFVGDL+P+VTD L F Y S A+
Sbjct: 253 GAQMPGTEQTFRLNWASFG----DSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAK 420
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D TGRS+G+GFV F + A+ ++ G + +R +R + AT + Q +
Sbjct: 421 VVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAP 600
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
K++ + S+ S PEN+ TTV +GNL T+ +L + F G V+
Sbjct: 601 PKAMYQFPAYSAP-----VSAVAPENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIVL- 762
Query: 263 EVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCG-KIIKCSW 305
V++ KG+G+V++ T A AIQ Q + G ++I+ SW
Sbjct: 763 -VKIYAGKGYGYVQFGTRVSAEDAIQ--RMQGKVIGQQVIQISW 885
Score = 56.2 bits (134), Expect = 2e-08
Identities = 52/226 (23%), Positives = 89/226 (39%), Gaps = 7/226 (3%)
Frame = +1
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
+++GDL V ++ L CF+ +++ ++ TG+ G+GFV F S A++ +
Sbjct: 70 LWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTY 249
Query: 174 TGKWL-GSRQ-IRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQ 231
G + G+ Q R NWA+ G G +
Sbjct: 250 NGAQMPGTEQTFRLNWASFGDSGPDH---------------------------------- 327
Query: 232 YTTVYVGNLGSEATQLDLHRHFHA-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 286
+++VG+L + T L F A GA V+ + R KG+GFV+++ A+ A
Sbjct: 328 --SIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRA 501
Query: 287 IQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSA 332
+ N Y + ++ S + PP A P SA
Sbjct: 502 MTEMNG-VYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYSA 636
>TC227155 homologue to UP|Q9LNS1 (Q9LNS1) F1L3.2, partial (20%)
Length = 475
Score = 125 bits (313), Expect = 4e-29
Identities = 60/67 (89%), Positives = 63/67 (93%), Gaps = 2/67 (2%)
Frame = +1
Query: 28 CR--YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 85
CR YVGN+HTQVTEPLLQEVFAGTGPVE CKL RK+KSSYGFIHYFDRRSAALAIL+LN
Sbjct: 274 CRSVYVGNIHTQVTEPLLQEVFAGTGPVEACKLIRKDKSSYGFIHYFDRRSAALAILSLN 453
Query: 86 GRHLFGQ 92
GRHLFGQ
Sbjct: 454 GRHLFGQ 474
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/29 (75%), Positives = 24/29 (81%), Gaps = 2/29 (6%)
Frame = +2
Query: 1 LNQSQVEICLLVLIQVLAAV--SSLSVRK 27
LNQ QVEICLLVLIQVLAAV S S+R+
Sbjct: 224 LNQFQVEICLLVLIQVLAAVCMSGTSIRR 310
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 234 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVR-VQRDK-GFGFVRYSTHAEAALAI 287
+VYVGN+ ++ T+ L F G G +E + +++DK +GF+ Y AALAI
Sbjct: 280 SVYVGNIHTQVTEPLLQEVF--AGTGPVEACKLIRKDKSSYGFIHYFDRRSAALAI 441
>TC227320 similar to UP|Q93YF1 (Q93YF1) Nucleic acid binding protein, partial
(70%)
Length = 1724
Score = 124 bits (312), Expect = 6e-29
Identities = 87/292 (29%), Positives = 144/292 (48%), Gaps = 9/292 (3%)
Frame = +1
Query: 27 KCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 82
K ++G++H + E L FA TG + K+ R +++ YGF+ ++ +A +
Sbjct: 424 KTIWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 603
Query: 83 TLNGRHLFG--QPIKVNWA-YASGQR-EDTSGHYNIFVGDLSPEVTDATLFACF-SVYQS 137
G + QP ++NWA +++G + D +IFVGDL+ +VTD+ L F SVY S
Sbjct: 604 NYAGILMPNAEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPS 783
Query: 138 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEE 197
A+V++D TGRS+G+GFV F + A+ + G + SR +R AT
Sbjct: 784 VKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYCSSRPMRIGAAT-------- 939
Query: 198 KQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALG 257
+ S L+NG++ + S+N TT++VG L + DL + F G
Sbjct: 940 PRKSSGHQQGGLSNGTANQSEADSTN---------TTIFVGGLDPNVSDEDLRQPFSQYG 1092
Query: 258 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKP 309
I V++ KG GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 1093E--IVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 1239
>TC225235 similar to GB|AAP37853.1|30725662|BT008494 At1g11650 {Arabidopsis
thaliana;} , partial (64%)
Length = 1154
Score = 124 bits (311), Expect = 7e-29
Identities = 89/299 (29%), Positives = 150/299 (49%), Gaps = 10/299 (3%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
++G++ + E L FA TG V K+ R +++S YGFI + R A + T N
Sbjct: 249 WIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYN 428
Query: 86 GRHL--FGQPIKVNWA-YASGQR--EDTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCS 139
G + GQ ++NWA +++G+R +D S Y IFVGDL+ +VTD L F Y S
Sbjct: 429 GAIMPNGGQSFRLNWATFSAGERSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVK 608
Query: 140 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQ 199
A+V+ D+ TGR++G+GFV F + + A+ ++ G +R +R A+ +
Sbjct: 609 GAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRIGPASN------KTP 770
Query: 200 NSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAG 259
+ S+ N + + EN+P TT++VGNL T L + F G
Sbjct: 771 ATQSQPKASYLNSQPQGSQN-------ENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGE- 926
Query: 260 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNP 318
+ V++ K GFV+++ + A A+++ N + L G+ ++ SWG P+ ++P
Sbjct: 927 -LVHVKIPAGKRCGFVQFADRSCAEEALRVLNG-TLLGGQNVRLSWGRSPSNKQAQADP 1097
Score = 77.8 bits (190), Expect = 8e-15
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 7/220 (3%)
Frame = +3
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
+++GDL + + L+ CF+ S +V+ +++T +S G+GF+ F S+ A+ +
Sbjct: 246 LWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 425
Query: 174 TGKWL--GSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQ 231
G + G + R NWAT AG E + DS P
Sbjct: 426 NGAIMPNGGQSFRLNWATFSAG--ERSRQDDS--------------------------PD 521
Query: 232 YTTVYVGNLGSEATQLDLHRHFHA-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 286
Y T++VG+L ++ T L F A GA V+ + R KG+GFVR+S +E A
Sbjct: 522 Y-TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRA 698
Query: 287 IQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAP 326
M Q LC ++P G ASN P + P
Sbjct: 699 --MTEMQGVLC--------STRPMRIGPASNKTPATQSQP 788
>TC225237 similar to UP|Q9LEB4 (Q9LEB4) RNA Binding Protein 45, partial (79%)
Length = 1560
Score = 123 bits (308), Expect = 2e-28
Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 10/299 (3%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
++G++ + E L FA TG V K+ R +++S YGFI + R A + T N
Sbjct: 315 WIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYN 494
Query: 86 GRHL--FGQPIKVNWA-YASGQRE--DTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCS 139
G + GQ ++NWA +++G+R D S Y IFVGDL+ +VTD L F Y S
Sbjct: 495 GAIMPNGGQSFRLNWATFSAGERSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVK 674
Query: 140 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQ 199
A+V+ D+ TGR++G+GFV F + + A+ ++ G +R +R A+ +
Sbjct: 675 GAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASN------KTP 836
Query: 200 NSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAG 259
+ S+ N + + EN+P TT++VGNL T L + F G
Sbjct: 837 TTQSQPKASYQNSQPQGSQN-------ENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGE- 992
Query: 260 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNP 318
+ V++ K GFV+++ + A A+++ N + L G+ ++ SWG P+ ++P
Sbjct: 993 -LVHVKIPAGKRCGFVQFADRSCAEEALRVLNG-TLLGGQNVRLSWGRSPSNKQAQADP 1163
Score = 77.4 bits (189), Expect = 1e-14
Identities = 61/220 (27%), Positives = 97/220 (43%), Gaps = 7/220 (3%)
Frame = +3
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
+++GDL + + L+ CF+ + +V+ +++T +S G+GF+ F S+ A+ +
Sbjct: 312 LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 491
Query: 174 TGKWL--GSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQ 231
G + G + R NWAT AG E ++ DS P
Sbjct: 492 NGAIMPNGGQSFRLNWATFSAG--ERSRHDDS--------------------------PD 587
Query: 232 YTTVYVGNLGSEATQLDLHRHFHA-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 286
Y T++VG+L ++ T L F A GA V+ + R KG+GFVR+S +E A
Sbjct: 588 Y-TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRA 764
Query: 287 IQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAP 326
M Q LC ++P G ASN P + P
Sbjct: 765 --MTEMQGVLC--------STRPMRIGPASNKTPTTQSQP 854
>TC205914 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, partial (9%)
Length = 1513
Score = 116 bits (291), Expect = 2e-26
Identities = 87/271 (32%), Positives = 137/271 (50%), Gaps = 12/271 (4%)
Frame = +3
Query: 48 AGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILTLNGRHL--FGQPIKVNWA-Y 100
A G V K+ R + YGF+ + +A + T NG + Q ++NWA +
Sbjct: 30 ATRGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPATDQTFRLNWASF 209
Query: 101 ASGQRE-DTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCSDARVMWDQKTGRSRGFGFV 158
G+R D + ++IFVGDL+P+VTD L F Y S A+V+ D T RS+G+GFV
Sbjct: 210 GIGERRPDAAPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFV 389
Query: 159 SFRSQQDAQSAINDLTGKWLGSRQIRCNWAT--KGAGGIEEKQNSDSKSVVELTNGSSED 216
F + + A+ ++ G + +R +R + AT K G K V + +S
Sbjct: 390 KFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPV 569
Query: 217 GKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVR 276
++ D NN TT++VGNL ++ +L ++ +L G I V++Q KGFGFV+
Sbjct: 570 -VQVQPPDYDVNN---TTIFVGNLDLNVSEEELKQN--SLQFGEIVSVKIQPGKGFGFVQ 731
Query: 277 YSTHAEAALAIQMGNAQSYLCG-KIIKCSWG 306
+ T A A AIQ Q + G ++++ SWG
Sbjct: 732 FGTRASAEEAIQ--KMQGKMIGQQVVRISWG 818
Score = 53.1 bits (126), Expect = 2e-07
Identities = 47/197 (23%), Positives = 81/197 (40%), Gaps = 39/197 (19%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGP-VEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 84
+VG++ VT+ LLQE F P V G K+ ++ YGF+ + D A+ +
Sbjct: 255 FVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEM 434
Query: 85 NGRHLFGQPIKVNWAYASGQREDTSGHY-------------------------------- 112
NG + +P+++ ++ + T+G Y
Sbjct: 435 NGVYCSTRPMRI----SAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVN 602
Query: 113 --NIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 170
IFVG+L V++ L Q+ + K +GFGFV F ++ A+ AI
Sbjct: 603 NTTIFVGNLDLNVSEEEL------KQNSLQFGEIVSVKIQPGKGFGFVQFGTRASAEEAI 764
Query: 171 NDLTGKWLGSRQIRCNW 187
+ GK +G + +R +W
Sbjct: 765 QKMQGKMIGQQVVRISW 815
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/81 (25%), Positives = 40/81 (48%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHL 89
+VGN+ V+E L++ G + K+ + +GF+ + R SA AI + G+ +
Sbjct: 615 FVGNLDLNVSEEELKQNSLQFGEIVSVKI--QPGKGFGFVQFGTRASAEEAIQKMQGKMI 788
Query: 90 FGQPIKVNWAYASGQREDTSG 110
Q ++++W R+D G
Sbjct: 789 GQQVVRISWGRTLTARQDLPG 851
>TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(97%)
Length = 2392
Score = 85.9 bits (211), Expect = 3e-17
Identities = 71/275 (25%), Positives = 120/275 (42%), Gaps = 9/275 (3%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++ VT+ L ++F G V ++ R + YG++++ + + AA A+ LN
Sbjct: 189 YVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLN 368
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMW 145
L +PI++ +++ SG NIF+ +L + L FS + + +V
Sbjct: 369 FTPLNNRPIRIMYSHRDPSIR-KSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVAT 545
Query: 146 DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKS 205
D +G+S+G+GFV F +++ AQ AI L G L +Q+ G KQ +S +
Sbjct: 546 D-SSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY-------VGPFLRKQERESAA 701
Query: 206 VVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVR 265
+ ++ V+V NL T +L F G I
Sbjct: 702 ----------------------DKAKFNNVFVKNLSESTTDDELKNTFGEF--GTITSAV 809
Query: 266 VQRD-----KGFGFVRYSTHAEAALAIQMGNAQSY 295
V RD K FGFV + +AA A++ N + +
Sbjct: 810 VMRDGDGKSKCFGFVNFENADDAARAVEALNGKKF 914
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTLNG 86
+V N+ T+ L+ F G + + R + +GF+++ + AA A+ LNG
Sbjct: 726 FVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNG 905
Query: 87 RHLFGQPIKVNWAYASGQRE---------------DTSGHYNIFVGDLSPEVTDATLFAC 131
+ + V A +RE D N++V +L + D L
Sbjct: 906 KKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKEL 1085
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + +VM D G SRG GFV+F + ++A A+ ++ GK + S+ +
Sbjct: 1086FSPFGTITSCKVMRDPN-GLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 1238
Score = 38.9 bits (89), Expect = 0.004
Identities = 21/79 (26%), Positives = 38/79 (47%), Gaps = 3/79 (3%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKS---SYGFIHYFDRRSAALAILTLNG 86
YV N+ + + L+E+F+ G + CK+ R GF+ + A+ A+L +NG
Sbjct: 1035 YVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNG 1214
Query: 87 RHLFGQPIKVNWAYASGQR 105
+ + +P+ V A R
Sbjct: 1215 KMVVSKPLYVTLAQRKEDR 1271
>BI971302
Length = 205
Score = 84.7 bits (208), Expect = 6e-17
Identities = 37/47 (78%), Positives = 41/47 (86%)
Frame = +2
Query: 138 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIR 184
C DARVMWD KTGR+ G+GFVSFR QDA SAIND+TGKWLG+RQIR
Sbjct: 62 CRDARVMWDHKTGRTTGYGFVSFRDHQDAHSAINDMTGKWLGNRQIR 202
>TC225640 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
Length = 1290
Score = 81.6 bits (200), Expect = 5e-16
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
+VGN+ + L +F G VE ++ + +GF+ A+ +
Sbjct: 450 FVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEMFS 629
Query: 86 GRHLFGQPIKVNWAYASGQREDT--------SGHYNIFVGDLSPEVTDATLFACFSVYQS 137
G L G+ + VN A G + + S ++VG+L EV DA L FS +
Sbjct: 630 GYELNGRVLTVNKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVDDARLEQIFSEHGK 809
Query: 138 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 188
DARV++D++TGRSRGFGFV+ S+ D AI L G+ L R IR N A
Sbjct: 810 VEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVA 962
Score = 55.8 bits (133), Expect = 3e-08
Identities = 52/193 (26%), Positives = 79/193 (39%), Gaps = 4/193 (2%)
Frame = +3
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
IFVG+L ++ L + F + A V++++ T RSRGFGFV+ + ++ + A+
Sbjct: 447 IFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEMF 626
Query: 174 TGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYT 233
+G L R + N A E P +
Sbjct: 627 SGYELNGRVLTVNKAAPKGAQPERPPRP------------------------PRSFSSGL 734
Query: 234 TVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 289
VYVGNL E L + F G A V+ + R +GFGFV S+ + AI
Sbjct: 735 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 914
Query: 290 GNAQSYLCGKIIK 302
+ QS L G+ I+
Sbjct: 915 LDGQS-LDGRAIR 950
Score = 34.7 bits (78), Expect = 0.076
Identities = 35/139 (25%), Positives = 57/139 (40%), Gaps = 4/139 (2%)
Frame = +3
Query: 196 EEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHA 255
EE++ + ++ + G+ E G E + ++VGNL + +L F
Sbjct: 339 EEEEETSWENQGDTAWGTEEGGHEEGGF---AEKAEEDKIFVGNLPFDIDSENLASLFGQ 509
Query: 256 LGAGVIEEV----RVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTP 311
G + EV R +GFGFV ST E A++M + L G+++ +K P
Sbjct: 510 AGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEMFSGYE-LNGRVLTV---NKAAP 677
Query: 312 PGTASNPLPPPAAAPLPGL 330
G P P + GL
Sbjct: 678 KGAQPERPPRPPRSFSSGL 734
>CF809311
Length = 668
Score = 81.6 bits (200), Expect = 5e-16
Identities = 52/153 (33%), Positives = 85/153 (54%), Gaps = 9/153 (5%)
Frame = +2
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
++G++ + E L FA TG + K+ R +++S YGFI + R A + T N
Sbjct: 209 WIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYN 388
Query: 86 GRHL--FGQPIKVNWA-YASGQRE-DTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCSD 140
G + GQ ++NWA +++G+R D S + IFVGDL+ +VTD L F Y S
Sbjct: 389 GTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKG 568
Query: 141 ARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
A+V+ D+ TGR +G+G V F + + A++++
Sbjct: 569 AKVVIDRLTGRXKGYGSVRFGDESEQVRAMSEM 667
Score = 64.7 bits (156), Expect = 7e-11
Identities = 47/181 (25%), Positives = 84/181 (45%), Gaps = 7/181 (3%)
Frame = +2
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
+++GDL + + L+ CF+ + +V+ +++T +S G+GF+ F S+ A+ +
Sbjct: 206 LWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 385
Query: 174 TGKWL--GSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQ 231
G + G + R NWAT AG E+++ DS P++
Sbjct: 386 NGTIMPNGGQNFRLNWATFSAG---ERRHDDS----------------------PDH--- 481
Query: 232 YTTVYVGNLGSEATQLDLHRHFH-----ALGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 286
T++VG+L ++ T L F A GA V+ + R KG+G VR+ +E A
Sbjct: 482 --TIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRXKGYGSVRFGDESEQVRA 655
Query: 287 I 287
+
Sbjct: 656 M 658
>TC225641 similar to GB|AAA18379.1|475719|ATU08467 RNA-binding protein 2
{Arabidopsis thaliana;} , partial (59%)
Length = 1223
Score = 77.4 bits (189), Expect = 1e-14
Identities = 52/169 (30%), Positives = 82/169 (47%), Gaps = 8/169 (4%)
Frame = +3
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
+VGN+ L +F G VE ++ + +GF+ A+ +
Sbjct: 435 FVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMFS 614
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGH----YNIFVGDLSPEVTDATLFACFSVYQSCSDA 141
G L G+ + VN A G + + + ++VG+L +V ++ L FS + DA
Sbjct: 615 GYELNGRVLTVNKAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDA 794
Query: 142 RVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 190
RV++D++TGRSRGFGFV+ S+ D AI L G+ L R IR N A +
Sbjct: 795 RVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQ 941
Score = 60.8 bits (146), Expect = 1e-09
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 5/217 (2%)
Frame = +3
Query: 103 GQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRS 162
G E+ + IFVG+L + L + F + A V++++ T RSRGFGFV+ +
Sbjct: 399 GFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMST 578
Query: 163 QQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGGIEEKQNSDSKSVVELTNGSSEDGKEIS 221
++ + A+ +G L R + N A KGA
Sbjct: 579 IEELEKAVKMFSGYELNGRVLTVNKAAPKGA----------------------------- 671
Query: 222 SNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRY 277
+ P PQ VYVGNL + L + F G A V+ + R +GFGFV
Sbjct: 672 QPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTM 851
Query: 278 STHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGT 314
S+ + AI + QS L G+ I+ + ++ P +
Sbjct: 852 SSETDMNDAIAALDGQS-LDGRAIRVNVAAQRPKPSS 959
Score = 36.6 bits (83), Expect = 0.020
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Frame = +3
Query: 187 WATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSND---VPENNPQYTTVYVGNLGSE 243
WA +G E++ + ++ + G+ E G +I E + ++VGNL +
Sbjct: 294 WAKEG-----EEEEAAWENQGDTAWGTEEGGDDIEDGGEGGFAEEEAEEVKIFVGNLPFD 458
Query: 244 ATQLDLHRHFHALGAGVIEEV----RVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGK 299
L F G + EV R +GFGFV ST E A++M + L G+
Sbjct: 459 FDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMFSGYE-LNGR 635
Query: 300 IIKCSWGSKPTPPGTASNPLPPP 322
++ +K P G P P
Sbjct: 636 VLTV---NKAAPKGAQPERPPRP 695
>TC220737 weakly similar to UP|Q9FFU0 (Q9FFU0) Similarity to
polyadenylate-binding protein 5, partial (33%)
Length = 450
Score = 77.0 bits (188), Expect = 1e-14
Identities = 49/139 (35%), Positives = 71/139 (50%), Gaps = 7/139 (5%)
Frame = +1
Query: 38 VTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLNGRHLFGQP 93
V E L FA G V K+ R E + YGF+ + +A + T N Q
Sbjct: 43 VDEAYLSHCFAPAGEVVSIKIIRNELTGQPEGYGFVEFVSHATAERVLQTYNATD---QT 213
Query: 94 IKVNWA-YASGQRE-DTSGHYNIFVGDLSPEVTDATLFACFSV-YQSCSDARVMWDQKTG 150
++NWA + G+R D + ++IFVGDL+P++TD L F Y S A+V+ D TG
Sbjct: 214 FRLNWASFGIGERRPDAALEHSIFVGDLAPDITDYLLQEMFRAHYPSVRGAKVVSDPNTG 393
Query: 151 RSRGFGFVSFRSQQDAQSA 169
RS+G+GFV F + + A
Sbjct: 394 RSKGYGFVKFSDENERNRA 450
Score = 46.6 bits (109), Expect = 2e-05
Identities = 39/165 (23%), Positives = 66/165 (39%), Gaps = 5/165 (3%)
Frame = +1
Query: 123 VTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQ 182
V +A L CF+ +++ ++ TG+ G+GFV F S A+ + +
Sbjct: 43 VDEAYLSHCFAPAGEVVSIKIIRNELTGQPEGYGFVEFVSHATAERVLQTYNAT---DQT 213
Query: 183 IRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGS 242
R NWA+ G G E + ++ + +++VG+L
Sbjct: 214 FRLNWASFGIG--ERRPDAALEH----------------------------SIFVGDLAP 303
Query: 243 EATQLDLHRHFHA-----LGAGVIEEVRVQRDKGFGFVRYSTHAE 282
+ T L F A GA V+ + R KG+GFV++S E
Sbjct: 304 DITDYLLQEMFRAHYPSVRGAKVVSDPNTGRSKGYGFVKFSDENE 438
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,058,697
Number of Sequences: 63676
Number of extensions: 244457
Number of successful extensions: 4453
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4205
length of query: 392
length of database: 12,639,632
effective HSP length: 99
effective length of query: 293
effective length of database: 6,335,708
effective search space: 1856362444
effective search space used: 1856362444
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146708.15